CUPlot 1.0

$Date: 2005-02-07$
(c) 2005, Jun ISHIKAWA
CAUTION: No warranty! ``USE AT YOUR OWN RISK''.

CUPlot is a derivative of FramePlot, and helps identification of protein-coding gene by using codon usage instead of third-letter G+C bias.
You selected the genus Serratia
Enter DNA sequence (FASTA or raw format. Digits and spaces are ignored.):

This may take a little time to run (~4,000 bases/sec depends on conditions).
OPTIONAL PARAMETERS
Window size:
Start codon:
ATG GTG TTG ATT CTG
Step size:
Minimum ORF size:
Incomplete ORF:
Image width:
Image color:
Sequence label (sample#, sequence ID, etc.; optional):

Comments are very much appreciated to: jun@nih.go.jp

Usage stats.

Change history

Version 1.0 (2005/02/07):
The first release. This version only uses the standard genetic code (transl_table=1 or 11).