Top 100 Gene ranking

Rank	Access	Id	Gene	Definition
1	474	nfa35380	rox	rifampin monooxygenase (low-level rifampin resistance _RESISTANCE; rifampin decoloration)
2	302	nfa55760	dnaB	replicative DNA helicase (putative intein at position 5911033..5912307 (found by Prof. S. Pietrokovski))
3	125	nfa15250		hypothetical protein (_PHAGE; putative intein at position 1682370..1683308 (found by Prof. S. Pietrokovski))
4	59	nfa15910		peroxidase
5	46	nfa53110		cytochrome P450 monooxygenase
6	44	nfa5180		cytochrome P450 monooxygenase (fatty acid metab; CYP125A)
7	42	nfa21740		hypothetical protein (latex clearing protein homolog; PMID:16672480)
8	41	nfa8200		hypothetical protein (PPE family protein)
9	41	nfa34460		transcriptional regulator
10	40	nfa34760	inhA	enoyl-ACP reductase (mycolic acid elongation; target of isoniazid; fabI)
11	38	nfa16150	fabD	malonyl-CoA-ACP acyltransferase (malonyl-CoA:ACP malonyltransferase; type II fatty acid synthase system)
12	34	nfa6190	nbtS	salicylate synthase (nocobactin; MbtI ortholog; hydroxybenzoate; bifunctional isochorismate synthase/isochorismate pyruvate lyase; upstream IdeR box-like sequence; _VIRULENCE)
13	33	nfa52820	fabH	3-oxoacyl-ACP synthase (typeII fatty acid synthase system)
14	33	nfa51930		hydrolase (chloroperoxidase?)
15	33	nfa34770	fabG	3-oxoacyl-ACP reductase (MabA; mycolic acid; type II fatty acid synthase system (FASII))
16	32	nfa8500		hypothetical protein (homologous (45%) to the Rv3877, which located in the RD1 region of Mtub.)
17	31	nfa8210		hypothetical protein
18	31	nfa53970	fabH3	3-oxoacyl-ACP synthase (fabH family)
19	30	nfa53100		cytochrome P450 monooxygenase (CYP157)
20	30	nfa1810	fbpA	mycolyltransferase (Ag85 family; fibronectin-binding protein; secreted; _VIRULENCE)
21	30	nfa50710		ferredoxin reductase
22	30	nfa19760		multi-drug efflux transporter (SMR; _RESISTANCE)
23	30	nfa8460		hypothetical protein
24	30	nfa49790	fabH2	3-oxoacyl-ACP synthase (fabH family?)
25	30	nfa33880		cytochrome P450 monooxygenase (fatty acid metab?)
26	29	nfa8920		sigma factor (extracytoplasmic function)
27	29	nfa8490		protease
28	29	nfa34810	inv	invasin (similar to an invasin of M. avium; _VIRULENCE; acnR-acn-hp-inv-moxR is conserved; NlpC/P60 family)
29	29	nfa44280		CRISPR-associated helicase
30	29	nfa5170	fadA3	acyl-CoA thiolase
31	29	nfa5330		ferredoxin
32	29	nfa8480		ion transporter
33	29	nfa8190		hypothetical protein
34	29	nfa1360		hypothetical protein (PPE family protein?)
35	29	nfa8470		hypothetical protein
36	29	nfa6200	nbtT	salicylate-AMP ligase (nocobactin; MbtA ortholog; hydroxybenzoate; upstream IdeR box-like sequence; _VIRULENCE)
37	29	nfa48350	fadA10	acyl-CoA thiolase (acetyl-CoA acetyltransferase)
38	29	nfa44220		CRISPR-associated protein (frameshift?)
39	29	nfa50170		hypothetical protein
40	28	nfa8440		methylthioadenosine phosphorylase
41	28	nfa46180		alkane-1-monooxygenase (fatty acid desaturase)
42	28	nfa49140		hypothetical protein
43	28	nfa44270		CRISPR-associated protein
44	28	nfa49150		glycosyltransferase
45	28	nfa8260		hypothetical protein (AAA family; stage V sporulation protein K homolog)
46	28	nfa9940		acyl-CoA carboxylase beta subunit (propionyl?)
47	28	nfa70070	rrnC16S	16S ribosomal RNA
48	28	nfa13240		ferredoxin reductase (assimilatory nitrate reductase?)
49	28	nfa50540	yrbE4A	YrbE family protein (_VIRULENCE)
50	28	nfa16310	ptpA	protein-tyrosine phosphatase (_VIRULENCE)
51	28	nfa49200		hypothetical protein
52	28	nfa8250		hypothetical protein
53	28	nfa8270		hypothetical protein (homologous (45%) to the Rv3877, which located in the RD1 region of Mtub.)
54	28	nfa8280		protease
55	28	nfa8510		FtsK/SpoIIIE family protein
56	28	nfa80490	trpU	tRNA-Trp (CCA)
57	28	nfa8430		hypothetical protein
58	28	nfa80170	argU	tRNA-Arg (CCT)
59	28	nfa8930		anti-sigma factor (preceded by a sigma factor gene)
60	28	nfa8240		hypothetical protein
61	28	nfa8230		hypothetical protein
62	28	nfa49290		type III polyketide synthase (chalcone/stilbene synthase family)
63	28	nfa51920	mshA	glycosyltransferase (_MYCOTHIOL; mycothiol is a functional analogue of glutathione.)
64	28	nfa44210		hypothetical protein
65	28	nfa44290		hypothetical protein
66	28	nfa54470		hypothetical protein
67	28	nfa49110		hypothetical protein
68	28	nfa33210		alkane-1-monooxygenase
69	28	nfa50640		transcriptional regulator (similar to THCA 5' REGION)
70	28	nfa43070	nrdE	ribonucleoside-diphosphate reductase alpha subunit (putative intein at position 4465995..4467221 (found by Prof. S. Pietrokovski))
71	28	nfa54610		short chain dehydrogenase
72	27	nfa8450		reductase
73	27	nfa53620		ferredoxin reductase
74	27	nfa80010	ileT	tRNA-Ile (GAT)
75	27	nfa49690		membrane protein (signalling protein?)
76	27	nfa52060		hydrolase
77	27	nfa50850		hypothetical protein
78	27	nfa55390	katC	catalase (hydroperoxidase; _VIRULENCE)
79	27	nfa5250		acyl-CoA synthetase
80	27	nfa48910		acyl-CoA synthetase (pks? peptide synthetase?)
81	27	nfa52200		monooxygenase
82	27	nfa49100		transcriptional regulator
83	27	nfa44250		CRISPR-associated protein
84	27	nfa70040	rrnB16S	16S ribosomal RNA
85	27	nfa7720		ferric nocobactin-binding protein (nocobactin; upstream IdeR box-like sequence; _VIRULENCE)
86	27	nfa4920		hydrolase
87	27	nfa52170		hypothetical protein (sigma?)
88	27	nfa44260		CRISPR-associated protein
89	27	nfa50410		citrate lyase beta subunit
90	27	nfa22930		cytochrome P450 monooxygenase (CYP154)
91	27	nfa80500	metW	tRNA-Met (CAT)
92	27	nfa51000		hypothetical protein
93	27	nfa47510		ferredoxin
94	27	nfa49170		hypothetical protein
95	27	nfa6670		histidine kinase (conservon)
96	27	nfa50360		transcriptional regulator (TetR)
97	27	nfa52070		hypothetical protein
98	27	nfa24320		cytochrome P450 monooxygenase (CYP125A)
99	27	nfa70010	rrnA16S	16S ribosomal RNA
100	27	nfa51080	yrbE5B	YrbE family protein (_VIRULENCE)