CUPlot 1.0

CUPlot is a derivative of FramePlot, and helps identification of protein-coding gene by using codon usage instead of third-letter G+C bias.

You selected the genus Onion
Enter DNA sequence (FASTA or raw format. Digits and spaces are ignored.):
		This may take a little time to run (~4,000 bases/sec depends on conditions).
OPTIONAL PARAMETERS
Window size: 10 codons 20 codons 30 codons 40 codons 50 codons 60 codons 70 codons 80 codons 90 codons 100 codons	Start codon: ATG GTG TTG ATT CTG
Step size: 1 codon 5 codons 10 codons 25 codons 50 codons 100 codons	Minimum ORF size: 10 codons 20 codons 30 codons 40 codons 50 codons 100 codons	Incomplete ORF: ON OFF
Image width: Auto 300 dots 400 dots 500 dots 750 dots 1000 dots 2000 dots 3000 dots 4000 dots 5000 dots	Image color: Color Black & White	Sequence label (sample#, sequence ID, etc.; optional):