Inverted Repeats Finder Program written by:
Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 3.05
Sequence: NFA 2003-09-04
Parameters: 2 3 5 80 10 40 100000 500000 -t7 600000 -d
Length: 6021225
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15, N:0.00
File 1 of 3
Found at i: 2259 center: 4310 interval size: 80 g: 2
Alignment explanation
Indices: 2046--2092,2218--2264 Loop: 125 Score: 59
Left Length: 47 Right Length: 47 Average length: 47.0
3 most common centers (desc): 4310 0 0
2036 >> (LF) TTTGTGCCTT
2274 << (RF) ACCTTTTCGC
2046 >> GTGGATTCCTCGAGGAATCCCTGTGGAGTCCTCGAGGAATCCACCGG >> 2092
2264 << ****************G***TGTG*T******************T** << 2218
Statistics
Matches: 40 (85.11%), Mismatches: 7 (14.89%), Indels: 0 (0.00%)
ATpairs: 40.00%, CGpairs: 60.00%, GTpairs: 0.00%
:i = 2259
tupleindex: 2
intervalindex: 1
matches_in_interval: 29.0000
lowcenter: 4298
highcenter: 4322
testcenter: 4310
im3: 29.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 77188 center: 154264 interval size: 40 g: 1
Alignment explanation
Indices: 77021--77110,77154--77243 Loop: 43 Score: 48
Left Length: 90 Right Length: 90 Average length: 90.0
3 most common centers (desc): 154264 154268 154267
77011 >> (LF) TGCTGCGCAC
77253 << (RF) ACAGTGTAGA
77021 >> CGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCACG-CAGGCCGC---CCCGCTCAGGCGAGAT >> 77091
77243 << ************---******A-*G*A***GT***A***GA***C*GA*G******ACT************-*-* << 77175
77092 >> GTGACA-C-CGCCTGAGCGGG >> 77110
77174 << **G***A*A************ << 77154
Statistics
Matches: 72 (75.00%), Mismatches: 12 (12.50%), Indels: 12 (12.50%)
ATpairs: 18.06%, CGpairs: 81.94%, GTpairs: 0.00%
:i = 77188
tupleindex: 1
intervalindex: 2
matches_in_interval: 37.0000
lowcenter: 154256
highcenter: 154272
testcenter: 154264
im3: 24.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 104705 center: 209043 interval size: 160 g: 2
Alignment explanation
Indices: 104337--104411,104632--104706 Loop: 220 Score: 47
Left Length: 75 Right Length: 75 Average length: 75.0
3 most common centers (desc): 209043 209044 209045
104327 >> (LF) GCGCCGGGCT
104716 << (RF) CTTCCAGAAC
104337 >> CCCGCGCCGAGGTGCTGCGCGCGCACGGCGTCACCA-CCA--TCGACGAACTGGCCGACTGGACCGGCCC-CGAC >> 104407
104706 << ******C**A**CG************--*****A**C***CC**G*-*****G*****T-***C******A**A* << 104636
104408 >> CCCG >> 104411
104635 << *A** << 104632
Statistics
Matches: 60 (75.95%), Mismatches: 11 (13.92%), Indels: 8 (10.13%)
ATpairs: 21.67%, CGpairs: 78.33%, GTpairs: 0.00%
:i = 104705
tupleindex: 2
intervalindex: 2
matches_in_interval: 99.0000
lowcenter: 209025
highcenter: 209061
testcenter: 209043
im3: 27.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 193434 center: 369926 interval size: 300 g: 3
Alignment explanation
Indices: 176461--176612,193315--193465 Loop: 16702 Score: 220
Left Length: 152 Right Length: 151 Average length: 151.5
3 most common centers (desc): 369926 369925 369927
176451 >> (LF) GTCGGATACC
193475 << (RF) GCGGACTCGT
176461 >> GCCTGAGCCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCACGGAGGCCGCCCCGGCTCGGGCGCG-TCGG >> 176534
193465 << ********C********************G********T********G**********G****T****TTT**G* << 193391
176535 >> ACACCGCCTGAGCCGGGTCAGCGGCCGGAGGCGGCAGCGCAGCGTCACCACGGAGGCCGCCCCGGCTCGGGCGCA >> 176609
193390 << ****T********-*****************************T********G**********G*********-* << 193318
176610 >> AAT >> 176612
193317 << *** << 193315
Statistics
Matches: 137 (89.54%), Mismatches: 13 (8.50%), Indels: 3 (1.96%)
ATpairs: 22.63%, CGpairs: 77.37%, GTpairs: 0.00%
:i = 193434
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 369902
highcenter: 369950
testcenter: 369926
im3: 82.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 197908 center: 395169 interval size: 160 g: 2
Alignment explanation
Indices: 194616--197314,197855--200559 Loop: 540 Score: 1203
Left Length: 2699 Right Length: 2705 Average length: 2702.0
3 most common centers (desc): 395175 395151 395166
194606 >> (LF) ACCATGCCCG
200569 << (RF) TCGCACTGAG
194616 >> GTGACTTCCGGCCGCAGGTGGTGGGGGTGTTCTCCGATCTCGAGGGTGCGGTGCCCGCCGG-GCTGAGCTTCGAC >> 194689
200559 << *****T**T****G***T****G**G******T**********G*GG*C*GT**A**C***A**-*G**C*CG** << 200486
194690 >> AT-GACCGTCGACACCCGGTTCAGCTCCAGCCCCACCTGGATCAAGCTGACCGCGATGCTGGCCGCGGTGCTGTG >> 194763
200485 << CGG***T-*****A****G***AG*****GC**C*CAGG*G*C**T***C*C*A****T*G*****G*G*C***A << 200412
194764 >> CACGATCATCGCCCTGGCCGCGCTGGCCCGCCTGGACGGCAGCGACGGCCGCGGCCACCGCCGGTTCCTGCCCGC >> 194838
200411 << ***GC*C*****C****AC**T***GT**AC******TG*AG**********G**CG******G*********** << 200337
194839 >> CAACTGGTT-CAAGCCGACCTGGGCCGACGGCGCGGTGCTCGGCACGCTGGTGCTGTGGCACTTCATCGGCGCCA >> 194912
200336 << CG******CC*CGAA**C**G**-**************************************T************ << 200263
194913 >> ACACCTCCGACGACGGCTACATCCTCAACATGGTCCGGGTGGCGCCGGAG-GC-CGGT-TACATGGCCAACTACT >> 194984
200262 << *********************************-*-*G*G*G*A*-****G**A***CG**************** << 200191
194985 >> TCCGCTGGTACGGCGTGCCGGAGGCGCCGTTCGGCTGGTACTACTACGTCAT--CCAGGTCTTCGCCGAGGTGTC >> 195057
200190 << T********A**G******G*****T*************G****C*C**CG*CC**A**T-*C-**CT******* << 200118
195058 >> CACGGCCAGTCCGTGGGTGCGCCTGCCCGCGCTGTTCTGCGCG-ATCCTGTGCTGGATGGTGATCAGCCGCGAGG >> 195131
200117 << CC*******G******T****C******T*****G**-***C*G************G****************** << 200044
195132 >> TGGTGCCGCGGCTCGGACGCG-GGGTGCGCACCAGCAAGGTGGCGCTGTGGACCGGCGGGC-TGGTGTTCCTGGC >> 195204
200043 << **G****G********C-***G********GC**T******G*************-*****G************* << 199971
195205 >> GTTCTGGCTGCCGTTCGACAACGGCCTGCGCTCGGAGCCGATCGTGGCGCTCGG-CGCGCTGCTGACCTGGGTCT >> 195278
199970 << ************G*T****************G****T***G*CT*G**-*C***C*********G**A***AC** << 199897
195279 >> CCATCGAACGCGCGATCGCGACCGGGCGCCTGCTGCCGGCCGCGGTGGCGGTGCTGATCGCGGCGTTCACCCTGG >> 195353
199896 << *C*****************G********C********G******T*G****************CG***A*C**** << 199822
195354 >> CCGCGGCCCCGACCGGGCTGATGTGCGTGGCCGCGCTGCTGGCCGGTACCCGGCCGCTGGTGCGGATCGTGGT-- >> 195428
199821 << ****G*C*********G*****G**************GT*G*****GA*C******C**A***T****T*G**GT << 199747
195428 >> -GCGC-CGC-CACCG----CGAGCACGGCACGCTGCCGTT--GCT--C-G-CGCCGATCGCGGCGG--C--G-GG >> 195483
199746 << T***CC***C*CC**CACC**C**C****C**CC*CA***GG***TA*A*A***A*G*****G***CC*AG*G** << 199672
195484 >> CCT--AC--TGGTGTTGACGGTGGTCTACAGCGACCAGACG-T-TCG-CGG-GCATCCAGGAGGCCAACCGGGTG >> 195550
199671 << *CCCG**CG*****G***AG*****C*A*CG*********GG*C**GT***A**-**--*-******G******* << 199601
195551 >> CGCCAGGC-GACCGGCCCGAACCTGGCCTGGTACGAGGA-CT-ACCTGCGCTACTACTACCTGTTCGTCGAGACG >> 195622
199600 << ***-*GG*A*CA******G***C*********A***G**C*CC***--****CCC***GC***G*CT*CGA*C*G << 199529
195623 >> GTGGACGGGTCGCTCTCGCGCCGGTTCGCCTTCCTGGTGATGCTGCTGTGCCTGTTCACCACCATGCTGGTGCTG >> 195697
199528 << GG******A*****CC*G*****G****C*C*C***G*G******A********G*CCA*A*CC**A**GT*C** << 199454
195698 >> CTGCGGCGCAGGC-GCGTGCCCGGCATCGCCAGCGCACCGACCTGGCGGTTGATGGGCATCGTGTTCGGCACGAT >> 195771
199453 << *****-*TTC***G**T*G**C****G*A*CG***CC**GA*CCA***GT*GG*G*************G*A**G* << 199380
195773 >> -CTTCTTCATGATGTTCAACCCGACGAAGTGGACCCACCACTTCGGCGCGTACGCGGGCATCGCGGGCTCGCTGG >> 195845
199379 << C**C**C-**********G******G********C*************AG********CG****G**A**A**** << 199306
195846 >> CCGCGGTGACGGCGGTCGCGGTGTCGGCCAGTGCGCTGCGGGCACGCAAG-AACCGGGCGATCTTCCTGGCCGGT >> 195919
199305 << *****G**C*******C******CCAT**CGC***T*G**GA*C*-*CG*G*****G***G*C***CG***C*GC << 199232
195920 >> CTGCTGTTCGTGCTGGCCATCGCGTTCTCGGGTATCAACGGCTACTGGTATGTCTCCAGCTTCGGCGTGCCGTGG >> 195994
199231 << C********G***********T*G***T*G**GAG********CC*****G*****C****T*********G*** << 199157
195995 >> TTCGACAAGCAGATCTCGCTG--CGCGGCTACCAGTC-GAACACGCTGATGCTGGTGTTGTTCGGTGTCGCGCTG >> 196066
199156 << *CC******CG*--*-*****TA*****CG*TCC*C*A*AG*******A*G**G*C*G*GTG***C*GC****** << 199085
196067 >> GCGCTGGTGGCCTGGTTCACCCTGC-GCGAGGACTACACCGCGCCGCAGCCCTCGGCCAAGACCGTGCG-CGGCA >> 196139
199084 << GA*C***G**AC******-*T**T*G*****GG****-*C*****-*-**C*G***C***--*-*-**AA**T*G << 199018
196140 >> GGCGCATCCGCAAGTTCGCCGCGATCCCGCTGACCGTGGTCGCCGCGCTGATGGTGGCGCT-CGAGGT-GCTGTC >> 196212
199017 << **-*--**-**G--*-*-*-***--**-*******T*G*G***C**G***G*****-*A**A****T*G**G-** << 198957
196213 >> GCTGGCCAAGGGCGCGGTCTCGCAGTACCCGGCCTACTCGCTGGCGCGCTCGAACGTCGACGCCTTGCGCGGCAA >> 196287
198956 << *******************CCG*****A************T*G**GTTC**G***T****CA*CG*******T** << 198882
196288 >> CATGTGCGGCCTGGCCAACGACGTGCTCGTCGAACCCGACCCCAACGACGGACAGCT-CACCCCGATCATCGATC >> 196361
198881 << AGG*****GC******C****C*****C**C**CT*CT**T**CG****AGC*A***C**T***--*-*-***-* << 198812
196362 >> CGAACGAGCCGCCGGCGAACGGCGACCCGCTGGCCGGCGCGAACCCGGTCGGCTTCGATCCCAACGGGGTGCCGG >> 196436
198812 << -*G-**--**-*****GC****-*-*----*********T*CACT***-*--****TGG***C********C**G << 198751
196437 >> ACGACCTGTCCGCCGACAGCGTCGAGGTGAA-GCC-G-GGCACCGGTAACACC-TCCAC-CCAGTCGGTCGG-CG >> 196505
198750 << C***A**GT********-***--****T**GG***T*G***CC**GG******C**C**T**C**C**CT*TT*T << 198679
196506 >> CGGCCTTCGCCGAGGGCGAGAACGCGGGCACCGGCGGCGGCCAGGGCGCCC-G-CGG-CGTGAACGGCAGCACCG >> 196577
198678 << T*T**TG*TT*TGGTG**-*--***G***************TGGTG****CT*C***C*T*G**********CA* << 198607
196578 >> TGGCGCTGCCGTTCGGCCTGGATCCGGCGACCACTCCGGTGATGGGCAGCTACCAGGCCGGGGTGCAGCAGC--- >> 196651
198606 << *******************G**G******GCC**G******G*G***AG********TC*TG*T*****C**TTC << 198532
196650 >> CCGCGC--ACCTGG---TG-T-CGAGCTGGTAC-GCGCTGCCG-C-AGCGGTCG-GCGGATC-G-C---CCGC-T >> 196707
198531 << ******AG***TG*GTG**C*T*GC*****TG*T*TT*-****T*C*G*A*-**G**G****G*C*CAT***CC* << 198459
196708 >> GATCGTGATCTCGGCGGCCGGCCGGGTGCTGTCCTTCGACGAC-ACCG-GTGCGATGAAGTACGGCCAGGAACTC >> 196780
198458 << *G*C*G****T*******C*****GT*GTT***CC******G*C**C*G***-**-**GG***********C**C << 198386
196781 >> AAGGTCGAGTACGGCAAGCGCGGGCCCGACGGCACCGTGACCAAG-CAG-GG--CGAGTACCTGCCGCGTGACAT >> 196851
198385 << GC***C*********CA*****T*C*********C***--**CC*A*GAG**AA**-**C*-******AC***** << 198315
196852 >> CGGCCCGTTCCCGTCCTGGCGCAACCTGCGGGTGCCGCTGGACGAGCTCGCCCC-CGACGCCGACGCGGTGCGGA >> 196925
198314 << *******CGT*************GC*****G**G***A*****GC***-****CC***C*ACT****G*****GG << 198241
196926 >> TCGTGGCCAACGACC-CGATCCTGATCG-GCGACCAGTGGCTGGCGTTCACGCCGCCGCGGATGCCGACCCTGCA >> 196998
198240 << *C*******A****TT***-*T*G*G*GT***-*************C****G*********G*****GCC***CG << 198168
196999 >> GTCGCTCGACGACTACCTCGGCTCGCGTC-AGCCGATCCTGCTGGACTGGGCCGTCGGTCTGCAGTTCCCGTGCC >> 197072
198167 << *T****CT**AGCCACC*******-*TG*C*A***C*C************GT******G***CGG*****G**** << 198094
197073 >> AGCGGCCGTTCTTCCACGAGAACGGCGTGGCGGAGGTGCCGCGCTACCGGGTGCTGCCGGACCGGC-CGCTCGCG >> 197146
198093 << *******G***CTA***G*GC**********G****GG*******CC**GT*G*****G**A***CA**C-*A** << 198020
197147 >> GTGAGCTCCACCAACACCTGGCAGGCCCAGGAGTTCGGCGGCCCGCTCGGCTTCGCGCAGATGCT-CGCCAGGTC >> 197220
198019 << *--*-*C**A*****C*********T*C*GTAGCC*****************CCT*GC*TG****C*ACT***G* << 197948
197221 >> GACCACCATTCCGACCTATCTGAAGGACGATTGGGCCAGGGACTGGGGCTCGCTCGAGCGCTACGAC-CAGTACG >> 197294
197947 << **C-***C*C**G********GC*GG****G****C*G****************C**T****A*-**C*GG**** << 197875
197295 >> ACCAGAGCGCGGTGCCCGCC >> 197314
197874 << *A*G*CG*****T***C*** << 197855
Statistics
Matches: 1992 (71.27%), Mismatches: 617 (22.08%), Indels: 186 (6.65%)
ATpairs: 26.46%, CGpairs: 73.54%, GTpairs: 0.00%
:i = 197908
tupleindex: 2
intervalindex: 2
matches_in_interval: 94.0000
lowcenter: 395151
highcenter: 395187
testcenter: 395169
im3: 30.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 256131 center: 512158 interval size: 20 g: 1
Alignment explanation
Indices: 256013--256057,256102--256144 Loop: 44 Score: 61
Left Length: 45 Right Length: 43 Average length: 44.0
3 most common centers (desc): 512159 512158 512157
256003 >> (LF) AGCGCCGGGC
256154 << (RF) CCAGCCCGGT
256013 >> CAGTCGGGCCTATGCATGGCCCAACTGGCCCAACTGGCCCAACTG >> 256057
256144 << **********-***********CC-******G************* << 256102
Statistics
Matches: 40 (88.89%), Mismatches: 3 (6.67%), Indels: 2 (4.44%)
ATpairs: 30.00%, CGpairs: 70.00%, GTpairs: 0.00%
:i = 256131
tupleindex: 1
intervalindex: 1
matches_in_interval: 21.0000
lowcenter: 512152
highcenter: 512164
testcenter: 512158
im3: 12.0000
frequent_center_ratio*rnkp: 4.0000
Found at i: 258942 center: 515970 interval size: 300 g: 3
Alignment explanation
Indices: 256980--257086,258884--258990 Loop: 1797 Score: 194
Left Length: 107 Right Length: 107 Average length: 107.0
3 most common centers (desc): 515970 0 0
256970 >> (LF) CAGCTGCACC
259000 << (RF) TCGCCTCGTC
256980 >> GGCCGCGCTGCGGTACCCGCCGAGCACCAGAGCGCGGGGTGGGCTCGGTCGATGCTCGAGCAAGTCGAGCTCGAG >> 257054
258990 << ****T*******G*********************************************************G**C* << 258916
257055 >> ATGGCCGAGCAAGTCGAGCTCGAGATGGCCGA >> 257086
258915 << ******************************** << 258884
Statistics
Matches: 103 (96.26%), Mismatches: 4 (3.74%), Indels: 0 (0.00%)
ATpairs: 29.13%, CGpairs: 70.87%, GTpairs: 0.00%
:i = 258942
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 515946
highcenter: 515994
testcenter: 515970
im3: 55.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 276182 center: 551368 interval size: 300 g: 3
Alignment explanation
Indices: 275182--275242,276129--276186 Loop: 886 Score: 51
Left Length: 61 Right Length: 58 Average length: 59.5
3 most common centers (desc): 551368 551371 551369
275172 >> (LF) CCCAGTACCC
276196 << (RF) GCGGGATGCC
275182 >> CCAGCAGCCCCCGCAATACCAGCAGCCGCAGTACCAGCCGCCGCAGCCGCAGTACCCGCAG >> 275242
276186 << ***********T*A*GCC****************C-**-*TT-****T**G********** << 276129
Statistics
Matches: 48 (78.69%), Mismatches: 10 (16.39%), Indels: 3 (4.92%)
ATpairs: 25.00%, CGpairs: 75.00%, GTpairs: 0.00%
:i = 276182
tupleindex: 3
intervalindex: 1
matches_in_interval: 124.0000
lowcenter: 551344
highcenter: 551392
testcenter: 551368
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 280103 center: 357256 interval size: 300 g: 3
Alignment explanation
Indices: 77068--77232,280024--280186 Loop: 202791 Score: 227
Left Length: 165 Right Length: 163 Average length: 164.0
3 most common centers (desc): 357256 357255 357254
77058 >> (LF) CGTCACCACG
280196 << (RF) TCCTGCAGCG
77068 >> CAGGCCGCCCCGCTCAGGCGAGATG-T-GACACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGA >> 77140
280186 << **T****C*C**-****G**-*-**G*G****************-*****************G**********G* << 280116
77141 >> CCACGTAGGCCGCCCCGCTCAGGCGAGATGTGACACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCG >> 77215
280115 << *****C********************G**GT**********************************G********* << 280041
77216 >> TGACCACGTAGGCCGCC >> 77232
280040 << *G******G******** << 280024
Statistics
Matches: 148 (88.62%), Mismatches: 13 (7.78%), Indels: 6 (3.59%)
ATpairs: 24.32%, CGpairs: 75.68%, GTpairs: 0.00%
:i = 280103
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 357232
highcenter: 357280
testcenter: 357256
im3: 66.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 280105 center: 357178 interval size: 300 g: 3
Alignment explanation
Indices: 77011--77154,280024--280166 Loop: 202869 Score: 229
Left Length: 144 Right Length: 143 Average length: 143.5
3 most common centers (desc): 357178 357177 0
77001 >> (LF) CCGGGTGGGC
280176 << (RF) GCAGTCGGCC
77011 >> TGCTGCG-CACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCACGCAGGCCGCCCCGCTCAG >> 77084
280166 << ****-**T**************-*****************G*****************C**************** << 280094
77085 >> GCGAGATGTGACACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGACCACGTAGGCCGCC >> 77154
280093 << ****G**GT**********************************G**********G******G******** << 280024
Statistics
Matches: 134 (92.41%), Mismatches: 8 (5.52%), Indels: 3 (2.07%)
ATpairs: 23.88%, CGpairs: 76.12%, GTpairs: 0.00%
:i = 280105
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 357154
highcenter: 357202
testcenter: 357178
im3: 68.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 280135 center: 456618 interval size: 300 g: 3
Alignment explanation
Indices: 176455--176595,280024--280161 Loop: 103428 Score: 219
Left Length: 141 Right Length: 138 Average length: 139.5
3 most common centers (desc): 456618 456619 456616
176445 >> (LF) GGGCGCGTCG
280171 << (RF) CGGCCACGAG
176455 >> GATACCGCCTGAGCCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCACGGAGGCCGCCCCGGCTCGGGCG- >> 176530
280161 << **G***********-**-*****************G*****************************-***T****T << 280090
176529 >> CGTCGGACACCGCCTGAGCCGGGTCAGCGGCCGGAGGCGGCAGCGCAGCGTCACCACGGAGGCCGCC >> 176595
280089 << *T**T**************-**************************************G******** << 280024
Statistics
Matches: 131 (92.25%), Mismatches: 6 (4.23%), Indels: 5 (3.52%)
ATpairs: 21.37%, CGpairs: 78.63%, GTpairs: 0.00%
:i = 280135
tupleindex: 3
intervalindex: 1
matches_in_interval: 118.0000
lowcenter: 456594
highcenter: 456642
testcenter: 456618
im3: 50.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 286358 center: 363434 interval size: 300 g: 3
Alignment explanation
Indices: 77021--77234,286200--286414 Loop: 208965 Score: 268
Left Length: 214 Right Length: 215 Average length: 214.5
3 most common centers (desc): 363434 363435 0
77011 >> (LF) TGCTGCGCAC
286424 << (RF) TCAAGACGCA
77021 >> CGCCTGAGCGGGTCAGCGGCC-GGAGGCGGTAGCGCAGCGTCACCACGCAGGCCGCCCCGCTCAGGCGAGATGTG >> 77094
286414 << ******************G**G********G*********************C**************TGT*TGTT << 286340
77095 >> ACACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGACCACGTAGGCCGCCCCGCTCAGGCGAGAT >> 77169
286339 << ****T*****************G**********G**********G******G***C******T*******TGT*T << 286265
77170 >> GTGACACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGACCACGTAGGCCGCCCC >> 77234
286264 << GTT****T*****************G******A***G**********G******G***C****** << 286200
Statistics
Matches: 183 (85.12%), Mismatches: 31 (14.42%), Indels: 1 (0.47%)
ATpairs: 23.50%, CGpairs: 76.50%, GTpairs: 0.00%
:i = 286358
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 363410
highcenter: 363458
testcenter: 363434
im3: 82.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 286361 center: 363512 interval size: 300 g: 3
Alignment explanation
Indices: 77099--77279,286233--286414 Loop: 208953 Score: 207
Left Length: 181 Right Length: 182 Average length: 181.5
3 most common centers (desc): 363512 363513 0
77089 >> (LF) GATGTGACAC
286424 << (RF) TCAAGACGCA
77099 >> CGCCTGAGCGGGTCAGCGGCC-GGAGGCGGTAGCGCAGCGTGACCACGTAGGCCGCCCCGCTCAGGCGAGATGTG >> 77172
286414 << ******************G**G********G**********G******G***C**************TGT*TGTT << 286340
77173 >> ACACCGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTGACCACGTAGGCCGCCCCGCTCAGGCGAGAT >> 77247
286339 << ****T*****************G**********G**********G******G***C******T*******TGT*T << 286265
77248 >> GTGACACCCTCTGAGCGGGTCAGCGGCCGGAG >> 77279
286264 << GTT****TCG***************G****** << 286233
Statistics
Matches: 151 (82.97%), Mismatches: 30 (16.48%), Indels: 1 (0.55%)
ATpairs: 24.50%, CGpairs: 75.50%, GTpairs: 0.00%
:i = 286361
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 363488
highcenter: 363536
testcenter: 363512
im3: 73.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 286403 center: 462875 interval size: 300 g: 3
Alignment explanation
Indices: 176460--176627,286249--286414 Loop: 109621 Score: 183
Left Length: 168 Right Length: 166 Average length: 167.0
3 most common centers (desc): 462875 462874 462876
176450 >> (LF) CGTCGGATAC
286424 << (RF) TCAAGACGCA
176460 >> CGCCTGAGCCGGGTCAGCGGCC-GGAGGCGGTAGCGCAGCGTCACCACGGAGGCCGCCCCGGCTCGGGCGCGT-C >> 176532
286414 << *********-*********G**G********G*****************G***C*******-***T***T*TTT* << 286342
176533 >> GGACACCGCCTGAGCCGGGTCAGCGGCCGGAGGCGGCAGCGCAGCGTCACCACGGAGGCCGCCCCGGCTCGGGCG >> 176607
286341 << TT****T********-*********G****************************G***C******T-***T***T << 286269
176608 >> CAAATGGATACCGCCCGAGC >> 176627
286268 << ****GTT*G**T***A**** << 286249
Statistics
Matches: 141 (82.94%), Mismatches: 23 (13.53%), Indels: 6 (3.53%)
ATpairs: 22.70%, CGpairs: 77.30%, GTpairs: 0.00%
:i = 286403
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 462851
highcenter: 462899
testcenter: 462875
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 287801 center: 507161 interval size: 300 g: 3
Alignment explanation
Indices: 218824--219515,287649--288339 Loop: 68133 Score: 805
Left Length: 692 Right Length: 691 Average length: 691.5
3 most common centers (desc): 507161 507164 507166
218814 >> (LF) GAGATTACTT
288349 << (RF) GATGAACCGG
218824 >> GGC-CGGGGGCAC-GAACGGCTGGTTGATGGTGGTGAAGTACTGGATCGCGGCGCCGATCGCGACGGGCGCGGTC >> 218896
288339 << ***C*******CAA************************************G***C*******G**G**C****** << 288265
218897 >> ACCAGGATCTGGCCGGCCAGGGTGCCCAGCGCGCCGACGGCGAGGATGCCGCCCAGGCAGCCGATGGCCGCGGCC >> 218971
288264 << *****G*T******G**C*G***T**C****************A******************************* << 288190
218972 >> GGGATGAACGGACCGAACAGGCCGACGATGGTCGCCGAGGCCACGGTCGCACCCGCGATGCCGCCGAGCACGCAG >> 219046
288189 << ***********************************************************T*************** << 288115
219047 >> CCCACGGCCGCGCCGCCCAGGCCGCCGACCAGGGTGCCGATGGTGGCGCCCATGCCGATGGTGTCCTTCAGGCGG >> 219121
288114 << *****G***********************************G*************A***G****ACC*C**G*** << 288040
219122 >> TTGAAAGCGGCCAGCTCACGGTCGTATTCGCTCTTCCAGGGCGCCTTGTCCTCGAACGGCAGGGCGACCGGCTTG >> 219196
288039 << C*GG*C**G**C*G***C********G***********G************************************ << 287965
219197 >> TAGACCGCCTTGTCGACGTCGAGCTGCGGGGTCAGGGTGGCGGTGCGGTCGCTGATCTCGGCGGCGATCGGGAAC >> 219271
287964 << *****C**C*CG***GC*****T************************TG*******C*****************A << 287890
219272 >> TCGAACTCGTCCACGCGGAAGGTCAGCGGCGCGCCCGCGACGGTGGTGCCGTCGGCGGCCTTGATCTTGAGCGCG >> 219346
287889 << *****C**T**C*AG*****GGC******C*A********CGTG***T*******TG*************TCT*G << 287815
219347 >> TTGTCCTCGACCACCAGCGAGCCGGAGTCGATCGAGATGATGGACTGGGTGTCGGTCGACTGCGCGGTGAAATTG >> 219421
287814 << *G*********C********G**G*G****C*C*A******G***********************G*****C**- << 287741
219422 >> ATGGCACCGCTCTC-GGC-CGGCG-CGGCGGGCGCCGCGTTGACGGTGCCGGCGGTGACGCCGAGCGCGGCGATC >> 219493
287741 << ----******-***G***C***C*C*GA*******C***GGGC*******G****GG**G***CA****TA*CT* << 287671
219494 >> AGCAGCGCCGACG-TGGCGGCGA >> 219515
287670 << *G**T*****-**T*GT****** << 287649
Statistics
Matches: 585 (83.81%), Mismatches: 100 (14.33%), Indels: 13 (1.86%)
ATpairs: 28.38%, CGpairs: 71.62%, GTpairs: 0.00%
:i = 287801
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 507137
highcenter: 507185
testcenter: 507161
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 430299 center: 525217 interval size: 300 g: 3
Alignment explanation
Indices: 94237--95223,429994--430974 Loop: 334770 Score: 200
Left Length: 987 Right Length: 981 Average length: 984.0
3 most common centers (desc): 525217 525211 525205
94227 >> (LF) GATGCTGCGG
430984 << (RF) CTAAGGGTTT
94237 >> CCGGTGATGAGC-ATGACGATGCGGTCCACCCCCATGCCGAGGCCGCCGGTGGGTGGCATGGCGTGCTCGAGCGC >> 94310
430974 << *******-*G**G**G*TG*T***T**C*AA*****T***CAA***CA***G**G******G*******G*A*** << 430901
94311 >> CTGC-AGGAAGTCCTCGTCCAGCTCCATCGCCTCCGGGTCGCCGTTGGCGGCGAGCACCGACTGTTCGGTGAGCC >> 94384
430900 << C-**C*****************CT****A*****CAG***G**G*C***G*****AGAC*G***T***TG**T** << 430827
94385 >> TGCGC-CGCTGC-TCGACCGGGTCGGTGAGTTCGCTGTAGGCGGTGCCCAGTTCGACGCCCCAGGCCAC-CAGAT >> 94456
430827 << -**A*C*****CT**-*********TGG******CTT**TG*****C****G****T***C*-*GT**AT***** << 430755
94457 >> CCCAGCGT-TCGGTGACGCCGGGGGTGCTGCGGTGCGCCCGCGTCAGCGGCGAGACCGAGGTCGGGAAGTCGACG >> 94530
430754 << ****-*A*G*****G********GA*******T**AAC***C**C*****T***CA*AGGTG**********-** << 430682
94531 >> TA-GAAGGTCGGTTCCTCGGTGCGTGCCTCCAC-CAGGTGCTCGTACA-T-CTCCAACACGATCTGGCCCTCGTC >> 94601
430681 << T*G***T*****CC*T*TGT-**A**A*C**CAT*A****A**GG*C*C*A**A*C**GT*A*-**-**C*C*G* << 430610
94602 >> CCAGCCGTGCTGATACGGCA---C--GCC-GACCCGGTC-GCAGAGTTCGCGCAGTTCCGCGACGCCGGTCCGCG >> 94669
430609 << CA*G**G*A**GG*G***T*AAA*GT***G***T**GC*A**-**ACC*T****T****A****GCA***AAG** << 430536
94670 >> GGGTGATCTCGG-T-GCCCACGGCCGCCGACACCGCGCCG-TGCACCGTCTTGACCGGCCAGTCGCCGGAGATGT >> 94741
430535 << *T**G*-*-***G*G***C*C***C*******C**T-*C*T*T**A*AG*TG*CA**G***G******G-**T*- << 430466
94742 >> CCACCGGCTCCAGCGCGCCGTCCGCGCCCGGCCGCATCGCGACCATCGAGCCGTTCGCCGCGAGCGCGGCGTTCT >> 94816
430466 << --*A**AT*A*-*-*A******-*-***T**CA-**-*-*-***ACC*A***GTTT***A*GA*A**GT*G*G** << 430401
94817 >> GGATGAGCACCCGG--CAG-GTGTGCATCATCCGAATGTAGTCGCTGTGCGCCTCGTAGGCCTCGAGGATGGTGA >> 94888
430400 << ****G*TAA*****TA**AG***-**CCTC**-*AG-****CA**G**T******T****AA**G**G**G*G** << 430329
94889 >> ACTCGGGGTTGTGGCTGAAGTCCACGCCCTCGTTGCGGAAGGTGCGGCCCAGTTCGAACACCTTCTCCATGCCAC >> 94963
430328 << ****G**GCTT***C**C****CC*T***************A*G***AAC*AG*****C**********CA**C* << 430254
94964 >> CCACG-CACAGCCGCTTGAGGTACAGCTCGGGCGCGATACGCAGGTAGAGATCCAGGTCGTAGGCGTTGATGTGG >> 95037
430253 << ****GT******-****G***T***T***G********C***********C****A****TC*******CTT*** << 430180
95038 >> GTGGTGAACGGGGTGGCGTTGGCGCCGCCGTGCACCTGCTGCAGGATGGGTGTCTCCACCTCGAGATAGCCCCAG >> 95112
430179 << ***TG*******GCG***CGG**T**T*******C*CA******G**G**G*****C********CT*A**C*-* << 430106
95113 >> GAGTTC-AGCGACTCGCGCAGCGAGCGGACCACCGCGCTGCGCTTGGCGAGCACGTCCCGGGTCTCCGGGTTGAT >> 95186
430105 << *G*G**G****GC*A******C*GT**G**C**C**GTGG**CC*GGA*CG**AG*C**A**G*******GCG*- << 430032
95187 >> CGCC-ATGTCGACGTAGCGCTGGCGCACCCGCGCCTCC >> 95223
430031 << **TAC*C***G***********T**C*****C*T**** << 429994
Statistics
Matches: 671 (66.24%), Mismatches: 284 (28.04%), Indels: 58 (5.73%)
ATpairs: 30.10%, CGpairs: 69.90%, GTpairs: 0.00%
:i = 430299
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 525193
highcenter: 525241
testcenter: 525217
im3: 88.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 474870 center: 554102 interval size: 300 g: 3
Alignment explanation
Indices: 79045--79457,474645--475057 Loop: 395187 Score: 303
Left Length: 413 Right Length: 413 Average length: 413.0
3 most common centers (desc): 554102 554103 554101
79035 >> (LF) CCTTGAACAG
475067 << (RF) CGACGTGCCG
79045 >> GAAGCGGTCCAGCTGCGCTTCCGGCAGCGGATAGGTGCCCTCCTGCTCGATCGGATTCTGGGTCGCGATCACCAC >> 79119
475057 << *********C*****C**************C***********C*T*********C**C*G***C**G*C***C*A << 474983
79120 >> GAACGGATCCGGAAGCGGTCGCGGTGT-GCCGTCGACGGAGACCTGCCGCTCCTCCATCGATTCCAGCAGTGCCG >> 79193
474982 << ***T**G*CA**G*****CTT-***A*G********A*GA******A*G***CC******GG********C**C* << 474909
79194 >> ACTGGGTTTTCGGGGGCGTGCGGTTGATCTCGTCGGCGAGCAGCAGGTTGGTGAAGACCGGACCCTGCCGGAAGG >> 79268
474908 << G******G**C**G**C**********G*********G*******G*********G*****G**CG********A << 474834
79269 >> TGAACTCGGCCGAA-TGCGGATCGTAGATC-TGCGAACCGGTGACATCGCCCGGCATCAGGTCGGGCGTGAACTG >> 79341
474833 << *****-******C*C*A*TAC*****T**CC**-******TCG*CC***C*C****C*********C******** << 474761
79342 >> CACGCGGGCGTGTTCGAGATCCAGCGCCGTGGCCAGCGCCCGTACCAGCAGCGTCTTGGCCACGCCCGGCACGCC >> 79416
474760 << ********A*TTC*****CG*C**C**C*G***C*TC*T***CC*C*AC**C******G*C*C***C****C*A* << 474686
79417 >> CTCGAGCAGCACGTGGCC-CCGGCACAGCAGCGCGAGCACGA >> 79457
474685 << *****AC***********C****-*C****GC****A**A** << 474645
Statistics
Matches: 314 (75.30%), Mismatches: 95 (22.78%), Indels: 8 (1.92%)
ATpairs: 33.44%, CGpairs: 66.56%, GTpairs: 0.00%
:i = 474870
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 554078
highcenter: 554126
testcenter: 554102
im3: 60.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 485602 center: 832711 interval size: 300 g: 3
Alignment explanation
Indices: 347060--347186,485522--485651 Loop: 138335 Score: 65
Left Length: 127 Right Length: 130 Average length: 128.5
3 most common centers (desc): 832711 832708 832710
347050 >> (LF) GGTTTATAGG
485661 << (RF) ATGAGGTCTT
347060 >> GGCGGATGCTGGTGAAGATG-CGCTTGGCGGTGTCGGGGTC-GACGGCCTTGGGGACGCCGGTGTCGGCGGCGAT >> 347132
485651 << ******G*C**********GA***CC*G*A*C*GC******T*AAG***--**********GC*********G*C << 485579
347133 >> CACCATGACGAGGCTGCCGGTGTCGGCGG-GG-GT-GGCGAAGGTGTAGATGGAGAA >> 347186
485578 << CCAC*C*******T**CC*A******C*GG**G*TT**************G****** << 485522
Statistics
Matches: 95 (71.97%), Mismatches: 30 (22.73%), Indels: 7 (5.30%)
ATpairs: 27.37%, CGpairs: 72.63%, GTpairs: 0.00%
:i = 485602
tupleindex: 3
intervalindex: 1
matches_in_interval: 129.0000
lowcenter: 832687
highcenter: 832735
testcenter: 832711
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 495629 center: 960162 interval size: 300 g: 3
Alignment explanation
Indices: 464495--464653,495512--495666 Loop: 30858 Score: 72
Left Length: 159 Right Length: 155 Average length: 157.0
3 most common centers (desc): 960162 960161 960163
464485 >> (LF) GGAACTGGCC
495676 << (RF) GTCGTCAACC
464495 >> GGGCTGGCCG-GCTGGTGCCTCGAGACCGCGGTCGACTACGCCAAGGTGCGCGAGCAGTTCGGCCGCAAGATCGG >> 464568
495666 << ****C*****G**-*G***AC*TG*-*****TG***T*********GT****T***********T*CGG****** << 495594
464569 >> CTCCTTCCAGGCGGTCAAGCACAT-CTGCGCGTGGATGCTGTGCCGCAC-CGAGCTGATCCGCGCCGTCGCGCTG >> 464641
495593 << *CTC********G********C*TC***CG**TG*-*****TA*-**C*A***G***C-***T****-*A-**** << 495524
464642 >> GA-CGCCGCGGCG >> 464653
495523 << A*A***-****** << 495512
Statistics
Matches: 117 (71.78%), Mismatches: 34 (20.86%), Indels: 12 (7.36%)
ATpairs: 23.08%, CGpairs: 76.92%, GTpairs: 0.00%
:i = 495629
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 960138
highcenter: 960186
testcenter: 960162
im3: 57.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 497025 center: 962285 interval size: 300 g: 3
Alignment explanation
Indices: 465176--465534,496751--497109 Loop: 31216 Score: 118
Left Length: 359 Right Length: 359 Average length: 359.0
3 most common centers (desc): 962285 962286 962283
465166 >> (LF) CCTGCTGCAA
497119 << (RF) CGACAAGCTC
465176 >> CACGGCACCCAGGAGCAGATCGACCGCTTC--GCCTGGCCGACGCTGCACGGTGAGGTGGTGTGGTGC-CAG-C- >> 465247
497109 << **********GG******G*******CT**TA***-*-*C**A*CG**C***G**G*TGT*G***-**C***C*G << 497038
465246 >> TGTTCAGCGAGCCCGAGGCGGGATCCGACCTGGCGGCGC-TGCGCACCACCGCGACCCGGGTCGACGGTGGCTGG >> 465319
497037 << **C**-*-*****C********GTC***********-**T*G***A*C**C***GCC**GTG***C**G**A*** << 496966
465320 >> CGGCTGCGCGGACAGAAGGTGTGGACCTCGCTCGGCGACCG-CGCGAACTGGGCGATCTGCCTGGCCCGCACCGA >> 465393
496965 << *A****T****G******TG*****CA****C-****A*CAA****C********A**C*C***AA*****C*** << 496892
465394 >> CGCCGAGGC-GCCCAAGCACCGCGGCATCAGCTACTTCCTGGTCGACATGAAGAGTCCCGGCCTCGA-GGTTCGT >> 465466
496891 << *G*******G*TC*C*-***TTC***G***G****C*CT**A**GGCG*G*GG-*G*CT**C*CA*AG***C**C << 496819
465467 >> CCGCTGGTGCAGATCACCGGGGAGGCGCGCTTCAGCGAAG-TGTTCCTCGACGACGTCTTCGTGCCCGA >> 465534
496818 << ***T*GGGG***G**CT***A***G**C*T***-***C**T*G**************C*********** << 496751
Statistics
Matches: 253 (68.56%), Mismatches: 96 (26.02%), Indels: 20 (5.42%)
ATpairs: 26.09%, CGpairs: 73.91%, GTpairs: 0.00%
:i = 497025
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 962261
highcenter: 962309
testcenter: 962285
im3: 68.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 529171 center: 648389 interval size: 300 g: 3
Alignment explanation
Indices: 119217--119330,529058--529172 Loop: 409727 Score: 65
Left Length: 114 Right Length: 115 Average length: 114.5
3 most common centers (desc): 648388 648387 648390
119207 >> (LF) TTGCGGCGCG
529182 << (RF) TAGCACTCAG
119217 >> GGCGCGGCGGCC-GCGGCGCCGGGTCGCGCCTGCGCGGCGGGG-CGGCCGGCGGTGGTGGCGGGGCGTGCCTGCG >> 119289
529172 << ********G***A*C*****C***C*-**T*C***********C***C**G*A*C****G***G***C*--**** << 529101
119290 >> CG-GCGGCCGGTGCG-CG-CGGGGATCCTCGAAGGGCTCCGGCG >> 119330
529100 << C*G**GA********C**T***G****CC**CGT***-****** << 529058
Statistics
Matches: 88 (73.95%), Mismatches: 22 (18.49%), Indels: 9 (7.56%)
ATpairs: 5.68%, CGpairs: 94.32%, GTpairs: 0.00%
:i = 529171
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 648365
highcenter: 648413
testcenter: 648389
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 532258 center: 828873 interval size: 300 g: 3
Alignment explanation
Indices: 296609--296862,532011--532264 Loop: 235148 Score: 119
Left Length: 254 Right Length: 254 Average length: 254.0
3 most common centers (desc): 828873 828876 828870
296599 >> (LF) TGACGCTGGA
532274 << (RF) ACTCGTAGCC
296609 >> CGACATCGACCTGGTCGAGATCAACGAGGCGTTCGCCTCCGTGGTGCTCAAGTTCCAGAAGGACCTGAACATCCC >> 296683
532264 << *************A****************G********C****G***CAG**CCCG*AG**---**G***TC** << 532193
296684 >> GGACGAGAAGCTG---AACGTCAACGGTGGCGCCATCGCGATGGGCCACCCGCTGGGCGCCACCGG--CGC-CAT >> 296752
532192 << ****TA*C*A*C*CAG*****************C*****GG*G********GC*G***A*******TA***C*G* << 532118
296753 >> GATCACCGGCACCATGGTCGACGAGCTGGAGCGTCGCAACGGCCGCTACG-CGCTGATCACCCTGTGCATCGGCG >> 296826
532117 << G*****TTG*C*AA**--*-*************CTG*CC****-**G***C**T*****GACT*****CG***A* << 532047
296827 >> GCGGCATGGGCGTGGCCACCATCATCGAGCGGGTCT >> 296862
532046 << *T*G*****G*TGG*CA***********T***T*** << 532011
Statistics
Matches: 186 (71.26%), Mismatches: 61 (23.37%), Indels: 14 (5.36%)
ATpairs: 32.26%, CGpairs: 67.74%, GTpairs: 0.00%
:i = 532258
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 828849
highcenter: 828897
testcenter: 828873
im3: 87.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 533123 center: 1038027 interval size: 300 g: 3
Alignment explanation
Indices: 504871--505140,532887--533156 Loop: 27746 Score: 127
Left Length: 270 Right Length: 270 Average length: 270.0
3 most common centers (desc): 1038027 1038029 1038026
504861 >> (LF) GACGCCTACG
533166 << (RF) TGTGGGCAGT
504871 >> TCGTCGACGCGGTGCGCACCCCCGTCGGCAAGCGCGGCGG-TGCCCTGGCCGGCGTGCACCCGGCCGACCTCGGC >> 504944
533156 << *******C**G*GA********CT****************G**C*-*G******G*****C*G*****T**-*-* << 533085
504945 >> GCGGCCGCGCTG--CGCGGCCTGTTCGATCGCAACTCCATCGACCCGATCAACGTCGACGACGTGATCGTCGGCT >> 505017
533084 << A*****A****GTT*****T***G****T***CG*GT*G*C**A***CG*GAC*****CG*C**GC***C***** << 533010
505018 >> GCGTCGACAACGTCGGCCCGCAGGCCGGCAACATCGGCCGCACCATGTGGCTGGCCGCGGGC-TACCCGGAGGAG >> 505091
533009 << *****TG*G*C*GT***CT****A**TT*******TG*T*CCA*CG*******GT*******G*C***A*-*G** << 532936
505092 >> GTGCCCGGAGTCACCGTCGACCGCCAGTGCGGCTCCAGCCAGCAGGCCA >> 505140
532935 << **GCC**GGTG****T*****CG************CCG*********** << 532887
Statistics
Matches: 193 (70.44%), Mismatches: 73 (26.64%), Indels: 8 (2.92%)
ATpairs: 23.83%, CGpairs: 76.17%, GTpairs: 0.00%
:i = 533123
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 1038003
highcenter: 1038051
testcenter: 1038027
im3: 68.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 548661 center: 1016609 interval size: 300 g: 3
Alignment explanation
Indices: 467180--468248,548361--549441 Loop: 80112 Score: 394
Left Length: 1069 Right Length: 1081 Average length: 1075.0
3 most common centers (desc): 1016621 1016609 1016627
467170 >> (LF) ATGGCGGTCA
549451 << (RF) TGGCCGCTCA
467180 >> ACCGCCACGGCGACGCCTACCGCGCCGTGGTGCGCCGGATGGGCCGCGACGGCTGGCTGGGTGTCGGCTGGCCGA >> 467254
549441 << **C****C***T***A********TC**G******CT***********************GCG*C********G* << 549367
467255 >> AGGAGTTCGGCGGGCAGGGCTTCGGCCCGGTCGAACAGCAGATCTTCTACAACGAGGCGGTGCGCGCCGACGTGC >> 467329
549366 << *************G****T*GC*GG*T*GT*C**A****AG******TG*C*******G*GGTA*****C**G** << 549292
467330 >> CGCTGCCGCTGGTGACACTGCTGAC-CG-TCGGCCCGACGTTGCAGGTG-TACGGCACCGAGGAACAGAAGCAGA >> 467401
549291 << **C*****A*GG****GT*-*T-**A**C***GC******T*-**A*GTG*******C******C*****T*CGA << 549220
467402 >> AGTTCCTGCCCGCCATCCTCACCGGCGACATCCACTTCGCCATCGGCTACTCCGAACCCGAGGCGGGCACCGACC >> 467476
549219 << AG*********TTC***CG*C****A**CG*C***********************C**C*C************** << 549145
467477 >> TGGCGGCGCTGCGCACCAGCGCCGTGCGCGACGCCTCCGGCGACTGGATCGTCAACGGGCAGAAGATCTTCACCA >> 467551
549144 << *G**GA************G***C**G*******C*CT**TCA**CA****---*****G********C*CC**** << 549073
467552 >> CCGGCG-CGCACGAGGCCGACTACATCTGGCTGGCC-TGCCGCACCGGCACCG--TGGAATCGCGCCACCGCGGC >> 467622
549072 << C*GA*TA***-*A*G*********C*C********CC***-******T*-***TT**GG*TCTT**-**TTC*** << 549002
467623 >> ATCACCATCCTGATCGTCGACACCAAGGATCCCGGCTACAGCTGGACGCCGAT-CATCACC-TGCGACGGCGCGC >> 467695
549001 << ****C***C**G*****CGG****C*G*GGCTC****A*AG******G***C*C**-****T**-*-***-**G* << 548931
467696 >> ACCACACCAACGCCACCTACTTCGACAACGTCCGGGTACCGGCGAACATGCTGGT-GGGCGAGGAGAACCGGGGC >> 467769
548931 << -*C******C***C*******T*G*CC****C*****C****A**C*AG******G****-********C*G*** << 548858
467770 >> TGGCAGCTGATCACCACCCAGCTCAACCACGAGCGTGTCGGCCTCGGCCCCT-CGGGCAAGAT-C-GAGCAGCTC >> 467841
548857 << ***CG***********T***************T**C****GC**-*T**A*CC****CAG*G*C*A**G*C**-* << 548785
467842 >> TACGACCGCGTGCGCGAGTGGGCC-G--CCGCCCAGGGCGT-G-CT-C-GCCG----A--G-CCGG-AC-G--TG >> 467898
548784 << ***TC*T*TGG*A*-*********T*CT**T**T***G**GG*T*CC*T****CCAG*AG*T****C*TA*CC** << 548711
467899 >> CGCC-GCACGCTGGGCCGGGTGCACGCGATGGTGCGGCT-CAACGAACTGCTGAACTGGCAGGTCGCCGGAACCG >> 467971
548710 << **CCA*T**-****G*TT*********G*T***-**TC*T*GA*T*C************C**T*****T*GGC** << 548638
467972 >> CGGAGC-GCGCGGACGCCGACCAGTCACAGGTCATCGCCGACGCCTCGGCCACCAAGGTGTTCTCCACCGAGAAG >> 468045
548637 << *G**A*T*C****A-**C*-**-*G*G*CG*G*GCA*C-********GT**AC********T*CC******-*G- << 548569
468046 >> TTGC-AG-GAGGCGGGCCGGCTGGTGGAGGAGATCGT-GGGCCGCTACGGCGACCC-CGCC-GAAC-CGGCCACC >> 468114
548568 << *C**G*GG*****GAT*******G**TA****C*CG*G*******-*C*G*A***AC****T*C**A*G*A*CC* << 548495
468115 >> GCGGAACTGCT-GGGCTGGCTGGACCGGC-GCACCAAGCAGAACCTGGTGGTGACCTTCGGCGGCGGCGTCAACG >> 468187
548494 << **G*******CG****-*******T**G*A*****CG**G*G-****T*GG*****************TG***** << 548422
468188 >> AGATCATGCGCGAACTCGTCGCCACCGCCGGGCTGAAGCTGCCGCGCGTGCCGC--GCTGACC >> 468248
548421 << **C**GT******GT**T******ACT***G****GCG*T***-****-*****GG******* << 548361
Statistics
Matches: 777 (69.81%), Mismatches: 260 (23.36%), Indels: 76 (6.83%)
ATpairs: 27.67%, CGpairs: 72.33%, GTpairs: 0.00%
:i = 548661
tupleindex: 3
intervalindex: 1
matches_in_interval: 150.0000
lowcenter: 1016585
highcenter: 1016633
testcenter: 1016609
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 585112 center: 865138 interval size: 300 g: 3
Alignment explanation
Indices: 280024--280165,584974--585114 Loop: 304808 Score: 207
Left Length: 142 Right Length: 141 Average length: 141.5
3 most common centers (desc): 865139 865138 0
280014 >> (LF) TGCGGTGAGC
585124 << (RF) CGGGCTGGCC
280024 >> GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCGGTGTCTGATGTCGCCTGAG >> 280098
585114 << *********************G****T*********************C*********T**G****-****G*GG << 585041
280099 >> CGGGGCGGCCTCCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCGCTCAGGCGGTGTCGAGC >> 280165
585040 << ***********C******G*****G****T********************C**********T***** << 584974
Statistics
Matches: 127 (89.44%), Mismatches: 14 (9.86%), Indels: 1 (0.70%)
ATpairs: 22.05%, CGpairs: 77.95%, GTpairs: 0.00%
:i = 585112
tupleindex: 3
intervalindex: 1
matches_in_interval: 112.0000
lowcenter: 865114
highcenter: 865162
testcenter: 865138
im3: 49.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 585114 center: 778445 interval size: 300 g: 3
Alignment explanation
Indices: 193291--193465,584984--585151 Loop: 391518 Score: 189
Left Length: 175 Right Length: 168 Average length: 171.5
3 most common centers (desc): 778445 778447 778444
193281 >> (LF) CCCGATCGGT
585161 << (RF) GGAGGCCGGC
193291 >> CTGACCCCGCTCAGGCTGTGTTTGATTT-CGCCCGAGCGGGGGCGGCCTGCGTGGTGATGCTGCGCTGCCGCCTC >> 193364
585151 << *******C*-**********GG--****C*******G*****-***************G***G****T******* << 585081
193365 >> CGGCCGCTGACCCGCTCAGGCTGTGTCGGATTTCGCCTGAGCGGGGGCGGCCTGCGTGGTGATGCTGCGCTGCCG >> 193439
585080 << **************C******C**T**G***C-****G*GG*****-*************G*G***G****T*** << 585008
193440 >> CCTCCGGCCGCTGACCCCGCTCAGGC >> 193465
585007 << ****************C-*-****** << 584984
Statistics
Matches: 147 (83.52%), Mismatches: 20 (11.36%), Indels: 9 (5.11%)
ATpairs: 25.17%, CGpairs: 74.83%, GTpairs: 0.00%
:i = 585114
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 778421
highcenter: 778469
testcenter: 778445
im3: 38.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 585184 center: 871471 interval size: 300 g: 3
Alignment explanation
Indices: 286229--286414,585059--585241 Loop: 298644 Score: 206
Left Length: 186 Right Length: 183 Average length: 184.5
3 most common centers (desc): 871471 871472 871470
286219 >> (LF) CGCTGCGCTG
585251 << (RF) CATCTCTGGT
286229 >> CCGACTCCGGGCGCTGACCCGCTCAGGCTGTGTTTGTTTGTGCCTGAGTGGGGCGCCCTGCGTGGTGACGCTGCG >> 286303
585241 << ***G******G**********C*********T*GG*T*-*G***G*GGG******C**********G*****G** << 585168
286304 >> CTGCCGCCTCCGGGCGCTGACCCGCTCAGGCTGTGTTTGTTTGTGCCTGAGCGGGGCGCCCTGCGTGGTGACGCT >> 286378
585167 << **T**********G**********C**********GGT-****G***G**G*******C**************** << 585094
286379 >> GCGCTGCCGCCTCCGGGGCGCTGACCCGCTCAGGCG >> 286414
585093 << G****T**********G-**********C******* << 585059
Statistics
Matches: 154 (82.80%), Mismatches: 29 (15.59%), Indels: 3 (1.61%)
ATpairs: 24.03%, CGpairs: 75.97%, GTpairs: 0.00%
:i = 585184
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 871447
highcenter: 871495
testcenter: 871471
im3: 38.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 585188 center: 865215 interval size: 300 g: 3
Alignment explanation
Indices: 280024--280161,585054--585191 Loop: 304892 Score: 184
Left Length: 138 Right Length: 138 Average length: 138.0
3 most common centers (desc): 865215 865216 0
280014 >> (LF) TGCGGTGAGC
585201 << (RF) CGGGCGGGCC
280024 >> GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCGGTGTCTGATGTCGCCTGAG >> 280098
585191 << ***************G*****G****T*********************C******A***G*TAA**-****G**G << 585118
280099 >> CGGGGCGGCCTCCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACC-GCTCAGGCGGTGTC >> 280161
585117 << ***********C************G****T*******************G*C*********T** << 585054
Statistics
Matches: 121 (87.05%), Mismatches: 16 (11.51%), Indels: 2 (1.44%)
ATpairs: 22.31%, CGpairs: 77.69%, GTpairs: 0.00%
:i = 585188
tupleindex: 3
intervalindex: 1
matches_in_interval: 105.0000
lowcenter: 865191
highcenter: 865239
testcenter: 865215
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 625453 center: 1154521 interval size: 300 g: 3
Alignment explanation
Indices: 529008--529157,625364--625519 Loop: 96206 Score: 65
Left Length: 150 Right Length: 156 Average length: 153.0
3 most common centers (desc): 1154521 1154525 1154524
528998 >> (LF) CGCCCGCGCC
625529 << (RF) GCTGTCGCTC
529008 >> CGGCGTC-CCCG-CGGCACC-CGCCGTCCCTGCCGCC-CCCGCGCTGCCGTCCGCG--CCGGGCCT-GCCGCCGA >> 529075
625519 << ***-***C****T**G*C**C*****T***C*T****C*****T*G***GC*****TC**G****TG******** << 625446
529076 >> TCGCCGTCGCCGCACCGGAGGCGCCCGCACCCGCGCCGGCACCCCAGGCGCCCGCC-C---CCGCCGCGCCGTCG >> 529146
625445 << T*G***C*-****G**TGGG*-*****CG*******-*G****C-*AG***C****T*ACT**G********G** << 625375
529147 >> GCCCCCGCGCC >> 529157
625374 << T********** << 625364
Statistics
Matches: 116 (72.05%), Mismatches: 29 (18.01%), Indels: 16 (9.94%)
ATpairs: 3.45%, CGpairs: 96.55%, GTpairs: 0.00%
:i = 625453
tupleindex: 3
intervalindex: 1
matches_in_interval: 132.0000
lowcenter: 1154497
highcenter: 1154545
testcenter: 1154521
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 649895 center: 802167 interval size: 300 g: 3
Alignment explanation
Indices: 152272--152310,649858--649895 Loop: 497547 Score: 46
Left Length: 39 Right Length: 38 Average length: 38.5
3 most common centers (desc): 802167 802168 0
152262 >> (LF) GGTGTCGCCC
649905 << (RF) TAGCTCTCAC
152272 >> CGGCGGTGTTCGGTGTCGCCCCGGCGGCGGTGTTCGATG >> 152310
649895 << ********G**********CC********G**C-***** << 649858
Statistics
Matches: 33 (84.62%), Mismatches: 5 (12.82%), Indels: 1 (2.56%)
ATpairs: 21.21%, CGpairs: 78.79%, GTpairs: 0.00%
:i = 649895
tupleindex: 3
intervalindex: 1
matches_in_interval: 111.0000
lowcenter: 802143
highcenter: 802191
testcenter: 802167
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 709754 center: 1294813 interval size: 300 g: 3
Alignment explanation
Indices: 585059--585241,709569--709754 Loop: 124327 Score: 231
Left Length: 183 Right Length: 186 Average length: 184.5
3 most common centers (desc): 1294813 1294811 1294810
585049 >> (LF) CATCGGATAC
709764 << (RF) AGAACGCGGC
585059 >> CGCCTGACCGGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTCACCACGCAGGCCGCCCCGGTCGGGCGCAA-ATG- >> 585133
709754 << *******C*****************T***G****G************************G**T******GC*GGT << 709680
585132 >> GCACAGCCTGACCGGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTGACCACGCAGGCCGCCCCGGGCGGGCGCA-T >> 585205
709679 << ****G******C**************T******G****G***T*G******************GA*T****T*T* << 709605
585206 >> CGGATACAGCCTGACCGGGTCAGCGGCCGGAGGCGG >> 585241
709604 << *G**G**G******C********************* << 709569
Statistics
Matches: 159 (85.48%), Mismatches: 24 (12.90%), Indels: 3 (1.61%)
ATpairs: 22.01%, CGpairs: 77.99%, GTpairs: 0.00%
:i = 709754
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 1294789
highcenter: 1294837
testcenter: 1294813
im3: 48.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 726326 center: 1452468 interval size: 80 g: 2
Alignment explanation
Indices: 726141--726164,726304--726327 Loop: 139 Score: 43
Left Length: 24 Right Length: 24 Average length: 24.0
3 most common centers (desc): 1452468 0 0
726131 >> (LF) TGACCGCTAT
726337 << (RF) CAACCGGCGC
726141 >> TGGCCCTGGTCTGGGTTGGTCTGC >> 726164
726327 << *******************G**** << 726304
Statistics
Matches: 23 (95.83%), Mismatches: 1 (4.17%), Indels: 0 (0.00%)
ATpairs: 30.43%, CGpairs: 69.57%, GTpairs: 0.00%
:i = 726326
tupleindex: 2
intervalindex: 1
matches_in_interval: 43.0000
lowcenter: 1452456
highcenter: 1452480
testcenter: 1452468
im3: 18.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 739828 center: 1216806 interval size: 300 g: 3
Alignment explanation
Indices: 476978--477018,739788--739828 Loop: 262769 Score: 45
Left Length: 41 Right Length: 41 Average length: 41.0
3 most common centers (desc): 1216806 1216807 0
476968 >> (LF) CCGCCGCCAC
739838 << (RF) AGCTGGGCGA
476978 >> CGGCCTGGTCGCCACCGC-CTACCTGCTCAACGCCGCCACCG >> 477018
739828 << *******G*****-*A**A*G*T*******G*********** << 739788
Statistics
Matches: 35 (83.33%), Mismatches: 5 (11.90%), Indels: 2 (4.76%)
ATpairs: 20.00%, CGpairs: 80.00%, GTpairs: 0.00%
:i = 739828
tupleindex: 3
intervalindex: 1
matches_in_interval: 121.0000
lowcenter: 1216782
highcenter: 1216830
testcenter: 1216806
im3: 46.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 780499 center: 1175208 interval size: 300 g: 3
Alignment explanation
Indices: 394709--394788,780420--780499 Loop: 385631 Score: 73
Left Length: 80 Right Length: 80 Average length: 80.0
3 most common centers (desc): 1175208 1175209 0
394699 >> (LF) GAGCGCGTTG
780509 << (RF) GTCGTGGCGG
394709 >> TCGATCTCGCCGAGTTCGATGCGGCGGCCGCCGAGCTTGATCTGGTCGTCGGCGCGGCCGAGGAAGATCAGGC-C >> 394782
780499 << ********************G**GA******CG*****G*G****TT*****A******G***A*G-**CT**T* << 780426
394783 >> CGCGCG >> 394788
780425 << ****** << 780420
Statistics
Matches: 64 (79.01%), Mismatches: 15 (18.52%), Indels: 2 (2.47%)
ATpairs: 28.12%, CGpairs: 71.88%, GTpairs: 0.00%
:i = 780499
tupleindex: 3
intervalindex: 1
matches_in_interval: 103.0000
lowcenter: 1175184
highcenter: 1175232
testcenter: 1175208
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 788608 center: 1247445 interval size: 300 g: 3
Alignment explanation
Indices: 458836--458962,788483--788609 Loop: 329520 Score: 50
Left Length: 127 Right Length: 127 Average length: 127.0
3 most common centers (desc): 1247445 1247444 1247443
458826 >> (LF) TGAGCAACGA
788619 << (RF) AGTGGCACCA
458836 >> GGTCTTGCCCGAGCCGTTCGGGCCGAGCA--CCGCG-ACGAATTCGCCGGGCCGGATGTCCAGGTCGAGGCCGTC >> 458907
788609 << ***********GT*****C********C*AC***T*G***G-*-****AA*C***GC**CT*TG*-**A****-* << 788539
458908 >> CCACAGG-GTGCGC-TCGCCGAAGGACA-GC-CGCGCCGCGCGCAGCCGGACCGCGGGC >> 458962
788538 << C**-***G****T*T************AA**C*T**A*-*A**TG**-*********** << 788483
Statistics
Matches: 96 (71.64%), Mismatches: 24 (17.91%), Indels: 14 (10.45%)
ATpairs: 21.88%, CGpairs: 78.12%, GTpairs: 0.00%
:i = 788608
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 1247421
highcenter: 1247469
testcenter: 1247445
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 813787 center: 1399639 interval size: 300 g: 3
Alignment explanation
Indices: 585847--586273,813369--813793 Loop: 227095 Score: 96
Left Length: 427 Right Length: 425 Average length: 426.0
3 most common centers (desc): 1399642 1399639 1399638
585837 >> (LF) TTGGCGATCT
813803 << (RF) CACGTTGCTC
585847 >> CGC-GCGGCCAGATGTAGTCGTTGCCGATGATCGC-CCAGCGGCGCACCCCCA-GCTCCCGCCGAGCCCAGCGCA >> 585918
813793 << ***A*********G********G*****GG*-**TT*********CC*C***CG*A*CA***CG****-****** << 813721
585919 >> CCGCCGCCAGGGTGTGCCCGGCCGG-GTGCTCGCCC-AGCATGAGGACGCCGGGCTGTTCG-TCCGGCAGCCCTT >> 585990
813720 << C***C*CAAG*T*G***ACTAT***G**-***G**CC****-**T*********CG*--**T*A*TG*-*****- << 813652
585991 >> CGTGGCTGGTCGC-GAACAGATAGGGCACCCGTCCGCCGTTGGCCGCGGCCACCGCCCGGCGGACGGCGGAGGTG >> 586064
813651 << ***T*TCG*T-**A*A*CCGC********C**T***CT*TCGT***C*****C***CAA******G*T****T** << 813578
586065 >> TGCCAGCCGGTGATGGCGTCCACCATGCCGGTGGCCAGCAGCGCGGCGACCTCGGTCGCGACGAGCTCCGG-CGC >> 586138
813577 << ***********G*GG*****C*A*GC*AAG*G***C*G****G*G**G*******GC*****G-**CC***C*A* << 813504
586139 >> GCGGCCACCGTCGAT-AT-TCGTGGTACGAATTTCGCGGCCCAGAATTCCCGCGC-CCGCGTTGATTTCCTCGG- >> 586211
813503 << *CG***C*******GC**G***T*A*-***GGCG*-*****CG*C*GT**-**G*C**A******CT**C-***T << 813433
586210 >> CCGCCAGCGAAATGGCCGCCTCGCACGACGGCGCGAGGATACCGCCGGGCCCACGCATCGGGAC >> 586273
813432 << ********AG*GG*T**********C******G***TG*TG***C*G*****GA***T***G** << 813369
Statistics
Matches: 293 (66.74%), Mismatches: 120 (27.33%), Indels: 26 (5.92%)
ATpairs: 21.84%, CGpairs: 78.16%, GTpairs: 0.00%
:i = 813787
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 1399615
highcenter: 1399663
testcenter: 1399639
im3: 41.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 821512 center: 1642985 interval size: 40 g: 1
Alignment explanation
Indices: 821468--821492,821493--821516 Loop: 0 Score: 43
Left Length: 25 Right Length: 24 Average length: 24.5
3 most common centers (desc): 1642985 1642984 0
821458 >> (LF) GCCGCGCAGT
821526 << (RF) ACTGGGGTGG
821468 >> GACACGAGCGGGCCCGTCCGGAAGG >> 821492
821516 << ***-********************* << 821493
Statistics
Matches: 24 (96.00%), Mismatches: 0 (0.00%), Indels: 1 (4.00%)
ATpairs: 20.83%, CGpairs: 79.17%, GTpairs: 0.00%
:i = 821512
tupleindex: 1
intervalindex: 2
matches_in_interval: 20.0000
lowcenter: 1642977
highcenter: 1642993
testcenter: 1642985
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 830187 center: 1224903 interval size: 300 g: 3
Alignment explanation
Indices: 394714--394818,830082--830189 Loop: 435263 Score: 83
Left Length: 105 Right Length: 108 Average length: 106.5
3 most common centers (desc): 1224903 1224900 1224899
394704 >> (LF) CGTTGTCGAT
830199 << (RF) GGCGGAGGTG
394714 >> CTCGCCGAGTTCGATGCGGCGGCCGCCGAGCTTGATCTGGTCGTCGGCGCGGCCGAGGAAGATCAGG-C-CCGC- >> 394787
830189 << *********G*********TTT****CG*G*****G***G********G*******G***GAG***GA*T***TT << 830115
394786 >> GCG-TTCCTTGCGCACCAGGTCACCGCTGCGGTA >> 394818
830114 << *A*C**C*C-****************C******* << 830082
Statistics
Matches: 84 (77.06%), Mismatches: 20 (18.35%), Indels: 5 (4.59%)
ATpairs: 29.76%, CGpairs: 70.24%, GTpairs: 0.00%
:i = 830187
tupleindex: 3
intervalindex: 1
matches_in_interval: 111.0000
lowcenter: 1224879
highcenter: 1224927
testcenter: 1224903
im3: 38.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 835278 center: 1229948 interval size: 300 g: 3
Alignment explanation
Indices: 394514--394818,835127--835437 Loop: 440308 Score: 125
Left Length: 305 Right Length: 311 Average length: 308.0
3 most common centers (desc): 1229948 1229945 1229951
394504 >> (LF) GGTGCGGGTG
835447 << (RF) GCGCAAGTGG
394514 >> GGCAGCTCGTCGACCA-G-CG--CCAGGCGCGGCACCAGCGGGGCGGGCAGGTGCTCGGCGAGGGATTCGCGCGC >> 394584
835437 << *******C*****C**G*T**TA**C****-*******ACAT**********G***C******G*-*C-****** << 835366
394585 >> GGCCCGCAGG--TCGTA-GTCGGCACCCGG--GCCGGTGAGGTAGCCGACGAGGATCTTGTTGCCCGCCTTGGTG >> 394654
835365 << T***C*CC**GG***GGG****T*C*CCA*AG****TG**G*T*******G***G**--*G-***-***CCG*G* << 835295
394655 >> GTCCGGATGGCCGCCGCGGCGGCGGT--G-ACGCCGGGCAGG-TGCTGGAGCGCGTTGTCGATCTCGCCGAGTTC >> 394725
835294 << *-*-*G*GGT***A*T**********GG*G***********GG***-*G******C*G*************AG** << 835223
394726 >> GATGCGGCGGCCGCCGAGCTTGATCTGGTCGTCGGCGCGGCCGAGGAAGATCAGGCC-C-GCGCGTTCCTTG-CG >> 394797
835222 << *******AT*****C**A***G*G*********************TA**CGC*T***C*G*A***CGTCCG*C** << 835148
394798 >> CACCAGGTCACCGCTGCGGTA >> 394818
835147 << ***C*****C***C******* << 835127
Statistics
Matches: 228 (71.03%), Mismatches: 67 (20.87%), Indels: 26 (8.10%)
ATpairs: 21.49%, CGpairs: 78.51%, GTpairs: 0.00%
:i = 835278
tupleindex: 3
intervalindex: 1
matches_in_interval: 109.0000
lowcenter: 1229924
highcenter: 1229972
testcenter: 1229948
im3: 61.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 863058 center: 1327920 interval size: 300 g: 3
Alignment explanation
Indices: 464857--464958,862966--863063 Loop: 398007 Score: 45
Left Length: 102 Right Length: 98 Average length: 100.0
3 most common centers (desc): 1327920 1327923 1327918
464847 >> (LF) GCTGGCGCGC
863073 << (RF) TGTACGACTT
464857 >> CCGGGTCACCGAACTCACCCGCG--CCGGGCATCGCCG-CACCACCGGTGCCGATCGGGTGCTCGCCGCCGACGG >> 464928
863063 << ***G***********C***CG**TA**G***A***T*TA*C*****--*T***G***A*-***C*T********T << 862992
464929 >> CGTGCAGGTCGACGGCGCCGCCGCGACCGG >> 464958
862991 << **---******G***A**-**A***G**** << 862966
Statistics
Matches: 76 (72.38%), Mismatches: 19 (18.10%), Indels: 10 (9.52%)
ATpairs: 18.42%, CGpairs: 81.58%, GTpairs: 0.00%
:i = 863058
tupleindex: 3
intervalindex: 1
matches_in_interval: 103.0000
lowcenter: 1327896
highcenter: 1327944
testcenter: 1327920
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 878605 center: 1748900 interval size: 300 g: 3
Alignment explanation
Indices: 870096--870490,878410--878808 Loop: 7919 Score: 154
Left Length: 395 Right Length: 399 Average length: 397.0
3 most common centers (desc): 1748900 1748903 1748899
870086 >> (LF) CAGCTGGTAG
878818 << (RF) TAGCCGCGGA
870096 >> ACCCCG-TCACCATCCCTCGTCGGTGACACCG-G-TGGCGC-GGGCGGCGCGCCAG-GATTCGTAGTCCTCGA-C >> 870164
878808 << ****C*G******T**CCT*********C***G*C*G****G****G*-*TA*C*AG*GG**GTG********T* << 878735
870165 >> CG--GTTCGGAGCCGGCCGGCATCGGGTCGGCCGTGGGCTGTTCCCGCGCGCTGAGCGGCGCCATCGAGGCGGGC >> 870237
878734 << **GT*CC******A*A*-*A*C***--***T**TG**T*G***C***C***CG*C****A**CC****GT*G*** << 878663
870238 >> GGGATCGACGGCCGGTGTGA-TTCGAGGTCGGGCATGCCGTCGATGAGGTCGGAGAGCTTGGGCATGCGCGCCCG >> 870311
878662 << **GCC**G***CTAG*GC*GC***-***********G**G****GG**********A********CG*****C** << 878589
870312 >> CTGCTCG-GCGACCGGCGCCAGCAACTCCTG-C-GCTTTCCGCGCGGCTTCCTTGGCGGCCTCCTGCGCGGCCGC >> 870383
878588 << *G*T**GA**-*CC**********CT*****C*G**C*-*-*T**GT*G**CCG********C**********A* << 878517
870384 >> GGTGACGGCGCGGGCGATCTCGTCGTAGTCCAGATCGCCGATGTCGGCGGAGAATCGGGTCTCCAGCACCGCGCC >> 870458
878516 << ***G**G**GAA**********CC****G*C*****GA*****G***TTGG***GAA******C*AC**CT*A** << 878442
870459 >> GTCGGCGTTGACCGTCACCTTCACCCGCTTGC >> 870490
878441 << ************C**C***C*****A****** << 878410
Statistics
Matches: 283 (69.53%), Mismatches: 104 (25.55%), Indels: 20 (4.91%)
ATpairs: 26.15%, CGpairs: 73.85%, GTpairs: 0.00%
:i = 878605
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 1748876
highcenter: 1748924
testcenter: 1748900
im3: 59.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 907138 center: 1444805 interval size: 300 g: 3
Alignment explanation
Indices: 537667--537705,907100--907138 Loop: 369394 Score: 43
Left Length: 39 Right Length: 39 Average length: 39.0
3 most common centers (desc): 1444805 0 0
537657 >> (LF) CGTCCAGCAG
907148 << (RF) CGTGGAGCGG
537667 >> GCTGTCGACGTCGCCGCCCGCACCCGCGGCCACCGCCGC >> 537705
907138 << *******G*GC******C*********G***G*C***** << 907100
Statistics
Matches: 32 (82.05%), Mismatches: 7 (17.95%), Indels: 0 (0.00%)
ATpairs: 9.38%, CGpairs: 90.62%, GTpairs: 0.00%
:i = 907138
tupleindex: 3
intervalindex: 1
matches_in_interval: 103.0000
lowcenter: 1444781
highcenter: 1444829
testcenter: 1444805
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 942132 center: 1860030 interval size: 300 g: 3
Alignment explanation
Indices: 917456--917922,942108--942571 Loop: 24185 Score: 247
Left Length: 467 Right Length: 464 Average length: 465.5
3 most common centers (desc): 1860030 1860027 1860031
917446 >> (LF) CGAGCAGAGA
942581 << (RF) GGGGCGGTTG
917456 >> TCGGTGTGCGCCGAGCCGATCCTCACCGGTGCGCCGCCGGTGGAACCG--CCACTGGCCCAGGCCGTGCTCGACC >> 917528
942571 << ****GG********-*--***********G*-**-*T***GGGC***TAA**CCT*******GC**G***C**A* << 942502
917529 >> TGCCCACGG-CCTGGCAGTTCAGCCGCGGCGCGGGCCAGAAGGTCGCCGTCATCGACACCGGCGTCAACCGGCAT >> 917602
942501 << *-*CTC***C*****T*****AG*TTC************GCA*****C**C***********A***CG******G << 942428
917603 >> CCGCGGCTGCGCGCGCTGCAGGCGGGCGGCGACTACGTCGCCGACAC---CGACGGCACCGTGGACTGCGACGGC >> 917674
942427 << ********G*G**CA***C****T********A*A***C**CT**A*CCC***********T************* << 942353
917675 >> CACGGCACGCTGGTCGCGGGCATCATCGCGGCCGCGCCGAGCCCCGACGACGCCTTCGCCGGGGTCGCCCCCGAC >> 917749
942352 << ********G********************G***A*G*T*CACCTC*C*G*C*C******C*****C**C**C**T << 942278
917750 >> GCGGAGATCCTCGCCATCCGCCAGCTCAGCCTGGCCTACGAGCCCAAGGACCGCCGCTCCGGCG-AGCAGTC-CG >> 917822
942277 << ***G*****T**T***********TG****TT*TAC***G**---*****CC*A*****-****C**T**C*C*G << 942207
917823 >> GGGCCATCACGACCTCCGGCTACGGCAATGTGCTCACCCTGGCCGGCGCGGTGGTGCGTGCGGTCGACATGGGCG >> 917897
942206 << G*T*C*CAA*G-**CT*T**********GG*GTT***CT*****AGC**GT*G*****G**G*G****G*G**** << 942133
917898 >> CCACCGTCATCAACATCTCCGAGGT >> 917922
942132 << *******C***************** << 942108
Statistics
Matches: 342 (72.00%), Mismatches: 114 (24.00%), Indels: 19 (4.00%)
ATpairs: 26.32%, CGpairs: 73.68%, GTpairs: 0.00%
:i = 942132
tupleindex: 3
intervalindex: 1
matches_in_interval: 123.0000
lowcenter: 1860006
highcenter: 1860054
testcenter: 1860030
im3: 34.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 943325 center: 1859982 interval size: 300 g: 3
Alignment explanation
Indices: 916643--916738,943244--943339 Loop: 26505 Score: 55
Left Length: 96 Right Length: 96 Average length: 96.0
3 most common centers (desc): 1859982 1859983 0
916633 >> (LF) CCATCATCCT
943349 << (RF) CCGACCGCCC
916643 >> GCTGTCGATGATCCCGCGGCTCGCCGCCGTCGC-CGCCCGGCTGCCGGTGCCGCCGGTGCCGACCGCGGGCGCCG >> 916716
943339 << ***G***G**CGC********-*A**TA**A**A***CTT*******G*************GA*CG*G***T**G << 943266
916717 >> CCATCGACCCGGCCGACCACGA >> 916738
943265 << *C********GT****CC**** << 943244
Statistics
Matches: 70 (72.16%), Mismatches: 25 (25.77%), Indels: 2 (2.06%)
ATpairs: 20.00%, CGpairs: 80.00%, GTpairs: 0.00%
:i = 943325
tupleindex: 3
intervalindex: 1
matches_in_interval: 106.0000
lowcenter: 1859958
highcenter: 1860006
testcenter: 1859982
im3: 35.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 993464 center: 1986750 interval size: 160 g: 2
Alignment explanation
Indices: 993286--993313,993436--993464 Loop: 122 Score: 41
Left Length: 28 Right Length: 29 Average length: 28.5
3 most common centers (desc): 1986750 1986749 0
993276 >> (LF) GCGCCTGCTC
993474 << (RF) CCGCCGCGTC
993286 >> GTCGCCGCCACCGCCGCGGCGGCCG-GCG >> 993313
993464 << *****C***A***************G*** << 993436
Statistics
Matches: 26 (89.66%), Mismatches: 2 (6.90%), Indels: 1 (3.45%)
ATpairs: 3.85%, CGpairs: 96.15%, GTpairs: 0.00%
:i = 993464
tupleindex: 2
intervalindex: 2
matches_in_interval: 133.0000
lowcenter: 1986732
highcenter: 1986768
testcenter: 1986750
im3: 25.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 997927 center: 1995796 interval size: 40 g: 1
Alignment explanation
Indices: 997865--997888,997908--997931 Loop: 19 Score: 48
Left Length: 24 Right Length: 24 Average length: 24.0
3 most common centers (desc): 1995796 0 0
997855 >> (LF) TTCGCGGCCC
997941 << (RF) CGGGGGACCA
997865 >> GTCTCGCGGTCGAGTCGCCGATGC >> 997888
997931 << ************************ << 997908
Statistics
Matches: 24 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 29.17%, CGpairs: 70.83%, GTpairs: 0.00%
:i = 997927
tupleindex: 1
intervalindex: 2
matches_in_interval: 28.0000
lowcenter: 1995788
highcenter: 1995804
testcenter: 1995796
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 998946 center: 1879364 interval size: 300 g: 3
Alignment explanation
Indices: 880418--880480,998884--998946 Loop: 118403 Score: 40
Left Length: 63 Right Length: 63 Average length: 63.0
3 most common centers (desc): 1879364 1879363 1879365
880408 >> (LF) CGAGTCCGGC
998956 << (RF) GTCGCTTGGC
880418 >> CGCGGCACCGTCGGATACGGGTGCCGT-GCCGGGC-GC-CGATGCCGCAGCCGGCGCGCCTCGGCC >> 880480
998946 << **********TC****C**G*-****GG*T***G*T*AT*G*-*****C*****-*********** << 998884
Statistics
Matches: 50 (75.76%), Mismatches: 10 (15.15%), Indels: 6 (9.09%)
ATpairs: 10.00%, CGpairs: 90.00%, GTpairs: 0.00%
:i = 998946
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 1879340
highcenter: 1879388
testcenter: 1879364
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1005258 center: 2010071 interval size: 160 g: 2
Alignment explanation
Indices: 1004813--1004845,1005226--1005258 Loop: 380 Score: 41
Left Length: 33 Right Length: 33 Average length: 33.0
3 most common centers (desc): 2010071 0 0
1004803 >> (LF) CGACTCCGGT
1005268 << (RF) CAGGCCGAGG
1004813 >> CCCGCGCATTCCAGCCTGGCCGCCGCGCTGCGC >> 1004845
1005258 << ********C*******G***C**CA******** << 1005226
Statistics
Matches: 28 (84.85%), Mismatches: 5 (15.15%), Indels: 0 (0.00%)
ATpairs: 14.29%, CGpairs: 85.71%, GTpairs: 0.00%
:i = 1005258
tupleindex: 2
intervalindex: 2
matches_in_interval: 86.0000
lowcenter: 2010053
highcenter: 2010089
testcenter: 2010071
im3: 23.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 1008929 center: 2017247 interval size: 80 g: 2
Alignment explanation
Indices: 1008314--1008385,1008861--1008934 Loop: 475 Score: 43
Left Length: 72 Right Length: 74 Average length: 73.0
3 most common centers (desc): 2017247 2017246 2017248
1008304 >> (LF) CCGCGTCACG
1008944 << (RF) CGCCTAGCGT
1008314 >> GCG-TGCTCGGCGACCGCG-CGGGTCGCGGGGGTGCGCCGCGGCCTGCG-CCG--CCGGGAGGCGCAGGCGCGCT >> 1008383
1008934 << ***T******T*****TC*A****-******GG*****-**G*TCC***C***AA****G***-***G******* << 1008863
1008384 >> GC >> 1008385
1008862 << ** << 1008861
Statistics
Matches: 58 (75.32%), Mismatches: 11 (14.29%), Indels: 8 (10.39%)
ATpairs: 12.07%, CGpairs: 87.93%, GTpairs: 0.00%
:i = 1008929
tupleindex: 2
intervalindex: 1
matches_in_interval: 75.0000
lowcenter: 2017235
highcenter: 2017259
testcenter: 2017247
im3: 21.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 1059332 center: 1966221 interval size: 300 g: 3
Alignment explanation
Indices: 906878--906908,1059313--1059343 Loop: 152404 Score: 47
Left Length: 31 Right Length: 31 Average length: 31.0
3 most common centers (desc): 1966221 0 0
906868 >> (LF) GGCGCTGGGT
1059353 << (RF) GGTGCGTGTC
906878 >> GGCGGTGCGGGCGGTGGCGCCGCGGGCGGCG >> 906908
1059343 << *******TA*A******************** << 1059313
Statistics
Matches: 28 (90.32%), Mismatches: 3 (9.68%), Indels: 0 (0.00%)
ATpairs: 7.14%, CGpairs: 92.86%, GTpairs: 0.00%
:i = 1059332
tupleindex: 3
intervalindex: 1
matches_in_interval: 126.0000
lowcenter: 1966197
highcenter: 1966245
testcenter: 1966221
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1065433 center: 2130824 interval size: 40 g: 1
Alignment explanation
Indices: 1065391--1065410,1065414--1065433 Loop: 3 Score: 40
Left Length: 20 Right Length: 20 Average length: 20.0
3 most common centers (desc): 2130824 0 0
1065381 >> (LF) CGCTGAGACG
1065443 << (RF) ACTCGCTGTG
1065391 >> CCGTCGAGCCCCCGGTTCCG >> 1065410
1065433 << ******************** << 1065414
Statistics
Matches: 20 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 20.00%, CGpairs: 80.00%, GTpairs: 0.00%
:i = 1065433
tupleindex: 1
intervalindex: 2
matches_in_interval: 32.0000
lowcenter: 2130816
highcenter: 2130832
testcenter: 2130824
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 1071513 center: 1656580 interval size: 300 g: 3
Alignment explanation
Indices: 584980--585229,1071347--1071604 Loop: 486117 Score: 238
Left Length: 250 Right Length: 258 Average length: 254.0
3 most common centers (desc): 1656580 1656578 1656582
584970 >> (LF) ACACGCTCGT
1071614 << (RF) CGTGCTGTCT
584980 >> CACCGCCTGA-CCGG-TCAGCGGCCGGAGGCGGTAGCGGAGCGTGACCACGCAGGCCGCCCCGGG-CGGGCGCAT >> 585051
1071604 << ***T******C****C******G***G******G****G***T*G******T***C********GT*T***T*CT << 1071530
585052 >> CGGATACCGCCTGA-CCGGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTCACCACGCAGGCCGCCCCGGT-CGGGC >> 585124
1071529 << *T**G*********C***********G******T***G****G***T********T***C********GT*T*** << 1071455
585125 >> GCAAATGGCACAGCCTGA-CCGGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTGACCACGCAGGCCGCCCCGGG-C >> 585197
1071454 << T*C*GT*T**********C*******G***G**********G****G***T*G******T***C********GT* << 1071380
585198 >> GGGCGC-ATCGGATACAGCCTGA-CCGGGTCAGC >> 585229
1071379 << T***T*C**T*-***********C********** << 1071347
Statistics
Matches: 207 (79.92%), Mismatches: 42 (16.22%), Indels: 10 (3.86%)
ATpairs: 23.19%, CGpairs: 76.81%, GTpairs: 0.00%
:i = 1071513
tupleindex: 3
intervalindex: 1
matches_in_interval: 111.0000
lowcenter: 1656556
highcenter: 1656604
testcenter: 1656580
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1071750 center: 1656817 interval size: 300 g: 3
Alignment explanation
Indices: 585057--585241,1071572--1071761 Loop: 486330 Score: 190
Left Length: 185 Right Length: 190 Average length: 187.5
3 most common centers (desc): 1656817 1656815 1656813
585047 >> (LF) CGCATCGGAT
1071771 << (RF) GATGTTGACC
585057 >> ACCGCCTGA-CCGGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTCACCACGCAGGCCGCCCCGGT-CGGGCGCAAA >> 585129
1071761 << *********C***********G******T***G****G***T********T***C********GT*T***T*C*G << 1071687
585130 >> TGGCACAGCCTGA-CCGGGTCAGCGGCCGGAGGCGGTAGCGGAGCGTGACCACGCAGGCCGCCCCGGG-CGGGCG >> 585202
1071686 << T*T**********C***********G***G******G****G***T*G******T***C********GT*T***T << 1071612
585203 >> CATCGGATACAGCCTGA-CCGGGTCAGCGGCCGGAGGCGG >> 585241
1071611 << *CT*T**G*********C***********G***G****** << 1071572
Statistics
Matches: 154 (81.05%), Mismatches: 31 (16.32%), Indels: 5 (2.63%)
ATpairs: 22.08%, CGpairs: 77.92%, GTpairs: 0.00%
:i = 1071750
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 1656793
highcenter: 1656841
testcenter: 1656817
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1138382 center: 1876637 interval size: 300 g: 3
Alignment explanation
Indices: 737363--738355,1138282--1139280 Loop: 399926 Score: 203
Left Length: 993 Right Length: 999 Average length: 996.0
3 most common centers (desc): 1876643 1876637 1876644
737353 >> (LF) TCCGTCCTGA
1139290 << (RF) CTCCACTAGC
737363 >> TCATCGGCGCCGGGTTCGGCGGGCTCGGCCTCGCGCTGGAACTGCGGCGCGCCGGGTTCGACGATTTCCGCATCC >> 737437
1139280 << **C**********G***AG****T****CCG****T*GT*CA*****CTC***********C**G****A*C**C << 1139206
737438 >> TCGAGAAGGCCGCCGACCTCGGCGGCGTGTGGCGGGAGAACACCTATCCCGGCGCCGCC-TGCGACGTGCCCTCG >> 737511
1139205 << ****GC*G****T**C*CGT*****TTGG****TGAC************C**A*A****C**-***T*A**C*** << 1139132
737512 >> CCGCTGTACTC-GTTCTCCCACGAGCCGAAAGCGGACTGGCCCCGGCGCTTCTCGGAGCAGCGCGACATCCACGA >> 737585
1139131 << AA-*T**AT**T*******AA**G**T*GCC*********A*C***CAC*T*C**GG*CC***C**CA*CT*C*G << 1139058
737586 >> CTACATGCG-CGGCGTGGCGCGCA-AGC-AC-GATCTGGGGCGGTTCATCCGGTTCGGCACCGAGGTTACCGACG >> 737656
1139057 << ****CG-**T*A*-***-**A*C*G*G*A**G***-**G***GGTTC*****G***AG****TG*T*G****GC* << 1138987
737657 >> CCGAGTTCGACGAGAGCCGCGGCG-GC-TGGACGGTGTCCACCGCCGACGGCGAGCAGCTGCGGTGCGCGATCC- >> 737730
1138986 << C***T********-*-*T*****TA*AC******A**GC************TG***C*******-*****C*A*C << 1138915
737729 >> TGGTGTCCGCGGTGGGGCAGCTCTCGCGTCCGGCGATGCC-GAGCATCCCCGGCAT-CGACACCTTCACCGGGGC >> 737801
1138914 << ****GCC****TGG***CA****T*G**C***TT*G****G**-******C***C*C**GC*C-***CC***G*A << 1138842
737802 >> CGCCTTCCACTCCGCGCGGTGGGACCAC-GACGTCGACCTCACCGGCAAGCGGGTGGCCTGCATCGGCACCGGCG >> 737875
1138841 << *T**T*C***T*******G*********G*A**T-*****CGCT**************CTA************** << 1138768
737876 >> CCAGCGCCATCCAGTACATCCCGCGCATCCAGCCCGACG-TCGCCCACCTCACGCTCTTCCAGCGCTCGGCCGCG >> 737949
1138767 << **AGC**CC*C***CA*******CTC***CG****-***C*C*TC*CC**CC*GC***********T*GG**TAG << 1138694
737950 >> TGGGTGT-TGCCCAAGCCCG-A--TGTCGAGTACCGCGC-GCTGCACCACGCCCTGT---T-CC-GGTACCTGC- >> 738015
1138693 << ***-**GG****CG-*****C*GG**G**GACG******G*****CC*AC**C***GCCC*C**G**GCC*G**A << 1138621
738014 >> CGCCGACCCGGCTGGCGGAGCGGTTCGCGATCTGGG-C-GATCTTCGAGTTCCTCGCGCTCGGGTTGACCG-ATC >> 738085
1138620 << ***AG*****G*****G-***GTCT*-*A*GC***TT*A**G****GG*T**CGC****T*---*--***TG*T* << 1138553
738086 >> TGCCGTGGATCAA-AGGGCCGGTGGTGGCGCTGGC-CGAAC-GGC--ACCGGGAGCGCCAGGTGGCCGATCCGGT >> 738155
1138552 << T-*C***GG-**GG*GG**-***G*G**T**-***A**GC*A***GG***A*GC***A******GT***G***** << 1138482
738156 >> CCTGCGCGCCAAGCTGACGCCGGACTACGAGCC-CGGCTGCAAGCGCGGGCTG-TTCTCCAACGACTACTTCCCG >> 738228
1138481 << *C******T*CG***G**G***GC****-*G**A*********T***GG-*T*G**************AG**C*G << 1138409
738229 >> GCCCTGGCCCAGCCGAACGTGACGGTGGAGACC-ACGGCCATCACCGAGATCACGCCCACCGGCGTGCGCACCGC >> 738302
1138408 << T*CA*GTT**C*************G********C**G-*C***C**********G*C*CC*************T* << 1138335
738303 >> GGACGGCGTCCTGCACGAGGCCGACGTGATCATCTACGGCACCGGCTTCAAGG >> 738355
1138334 << GTG****TG*CT***AGG**********G*C***GAC*G******C******* << 1138282
Statistics
Matches: 683 (66.44%), Mismatches: 281 (27.33%), Indels: 64 (6.23%)
ATpairs: 26.65%, CGpairs: 73.35%, GTpairs: 0.00%
:i = 1138382
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 1876613
highcenter: 1876661
testcenter: 1876637
im3: 55.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1144420 center: 2233608 interval size: 300 g: 3
Alignment explanation
Indices: 1089115--1089397,1144211--1144493 Loop: 54813 Score: 85
Left Length: 283 Right Length: 283 Average length: 283.0
3 most common centers (desc): 2233608 2233607 2233606
1089105 >> (LF) GCGGAGTGGT
1144503 << (RF) TCCCCAGCGC
1089115 >> CTCCGAGGGCTTCCAG-ACCACCGTGTCACCGCATACCAGCGC-GATCGCGGTGTTCCACGACCACACCGCGACC >> 1089187
1144493 << ***C********C-**G**C*TC*G**A******CC*******G*C**-***GG******TC*CCC*A*TA*C** << 1144421
1089188 >> GGGAAGTTGAACGCCGAGATCACCCCGACCACGCCGAGCGGATGCCAGGTCTCCATCA-AC--CGGTGCCCGGGC >> 1089259
1144420 << *************CC*A***CG**C****C***********G**C*-*GT-**C*CA*C**CA**T****C*A** << 1144348
1089260 >> C-GCTCCGACGGCATGGTGCGTCCGTAGAGCTGGCGCGCGAGGCCGACGGCGAACTCGCAGATGTCGATCATCTC >> 1089333
1144347 << *G**C**GA***AC*TA*-**G**A*-****T**A***C**A****************TA**GG****CCG-*C* << 1144276
1089335 >> -CTGCACCTCGCCCAGCGCCTCGGCGCGGATCTTGCCCGCCTC-CAGCGTCACCAGCCGGGCCAGG >> 1089397
1144275 << C***C*AC******AAC**C******TA*C*******CAC***C*A*-*T**C****CG******* << 1144211
Statistics
Matches: 198 (68.04%), Mismatches: 77 (26.46%), Indels: 16 (5.50%)
ATpairs: 28.28%, CGpairs: 71.72%, GTpairs: 0.00%
:i = 1144420
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2233584
highcenter: 2233632
testcenter: 2233608
im3: 54.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1258405 center: 2481569 interval size: 300 g: 3
Alignment explanation
Indices: 1223163--1223193,1258376--1258406 Loop: 35182 Score: 42
Left Length: 31 Right Length: 31 Average length: 31.0
3 most common centers (desc): 2481569 0 0
1223153 >> (LF) CCGTGGCCGC
1258416 << (RF) GCCCGCTAGC
1223163 >> CGACGCCGCCGACACCGCGGTCACCGAACTG >> 1223193
1258406 << **********GC*******G*******G*** << 1258376
Statistics
Matches: 27 (87.10%), Mismatches: 4 (12.90%), Indels: 0 (0.00%)
ATpairs: 22.22%, CGpairs: 77.78%, GTpairs: 0.00%
:i = 1258405
tupleindex: 3
intervalindex: 1
matches_in_interval: 103.0000
lowcenter: 2481545
highcenter: 2481593
testcenter: 2481569
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1300082 center: 2593260 interval size: 300 g: 3
Alignment explanation
Indices: 1293168--1293346,1299911--1300092 Loop: 6564 Score: 198
Left Length: 179 Right Length: 182 Average length: 180.5
3 most common centers (desc): 2593260 2593257 2593258
1293158 >> (LF) GGAGAAAGCC
1300102 << (RF) TAGGCTGTGT
1293168 >> GCCTGAGCGGGTCAGCGCCCGGAGGCGGTAGCGGAGTGTGGCCACGGAGGGCGCCCCGCTC-GG-GCTGGTCGGA >> 1293240
1300092 << *****************C***T***********G**G**GT*****G***G**********T**G**TG*T*GTC << 1300018
1293241 >> CACCGCCTGAGCGGGTCAGCGCCCGGAGGCGGTAGCGGAGCGTGGCCAC-GCAGGGCGCCCCGCTCGGGCACAGT >> 1293314
1300017 << ***T*****************C***T***********G*****GT**G*G*****G**********T***C**AG << 1299943
1293315 >> CGACACCGCCTGAGCGGGTCAGCGCCCGGAGG >> 1293346
1299942 << ******T*****************C***T*** << 1299911
Statistics
Matches: 150 (82.42%), Mismatches: 29 (15.93%), Indels: 3 (1.65%)
ATpairs: 21.33%, CGpairs: 78.67%, GTpairs: 0.00%
:i = 1300082
tupleindex: 3
intervalindex: 1
matches_in_interval: 104.0000
lowcenter: 2593236
highcenter: 2593284
testcenter: 2593260
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1300243 center: 2593417 interval size: 300 g: 3
Alignment explanation
Indices: 1293168--1293352,1300060--1300249 Loop: 6707 Score: 210
Left Length: 185 Right Length: 190 Average length: 187.5
3 most common centers (desc): 2593417 2593414 2593415
1293158 >> (LF) GGAGAAAGCC
1300259 << (RF) TAGGCTGTGT
1293168 >> GCCTGAGCGGGTCAGCGCCCGGAGGCGGTAGCGGAGTGTGGCCACGGAGGGCGCCCCGCTC-GG-GCTGGTCGGA >> 1293240
1300249 << *****************C*******C*******G**G**GT*****G***G**********T**G**TG*T*GTC << 1300175
1293241 >> CACCGCCTGAGCGGGTCAGCGCCCGGAGGCGGTAGCGGAGCGTGGCCAC-GCAGGGCGCCCCGCTCGGGCACAGT >> 1293314
1300174 << *********************C*******C*******G*****GT**G*G*****G**********T******AG << 1300100
1293315 >> CGACACCGCCTGAGCGGGTCAGCGCCCGGAGG-GGT-GCG >> 1293352
1300099 << ******T*****************C***T***G***T*** << 1300060
Statistics
Matches: 158 (83.16%), Mismatches: 27 (14.21%), Indels: 5 (2.63%)
ATpairs: 21.52%, CGpairs: 78.48%, GTpairs: 0.00%
:i = 1300243
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 2593393
highcenter: 2593441
testcenter: 2593417
im3: 35.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1300249 center: 2600354 interval size: 20 g: 1
Alignment explanation
Indices: 1300027--1300171,1300184--1300328 Loop: 12 Score: 54
Left Length: 145 Right Length: 145 Average length: 145.0
3 most common centers (desc): 2600351 2600355 2600354
1300017 >> (LF) GCTGGTCGTG
1300338 << (RF) GGGACGCGCG
1300027 >> CGCCTGAGCGGG---GCGGCCTGCGTGGTGA-CGCTGCGCTACCGCCTTCGGCCGCTGACCCGCTCAGGCTGTGT >> 1300097
1300328 << ************AGT******C*T*C**CA*C***T***AG***G**CGT******---***********-*GT* << 1300258
1300098 >> CGGATGT-GCCTGAGCGGG---GCGGCCTGCGGGGGTGACGCTGCGCTACCCCCTCCGGCCGCTGACCCGCTCAG >> 1300168
1300257 << *G**GTGT***********AGT******C*T******TC***T***AG***T*C-*T******---********* << 1300187
1300169 >> GCG >> 1300171
1300186 << *** << 1300184
Statistics
Matches: 109 (71.24%), Mismatches: 28 (18.30%), Indels: 16 (10.46%)
ATpairs: 12.84%, CGpairs: 87.16%, GTpairs: 0.00%
:i = 1300249
tupleindex: 1
intervalindex: 1
matches_in_interval: 25.0000
lowcenter: 2600348
highcenter: 2600360
testcenter: 2600354
im3: 11.0000
frequent_center_ratio*rnkp: 4.0000
Found at i: 1300269 center: 2600197 interval size: 160 g: 2
Alignment explanation
Indices: 1299925--1300092,1300105--1300272 Loop: 12 Score: 46
Left Length: 168 Right Length: 168 Average length: 168.0
3 most common centers (desc): 2600194 2600197 2600198
1299915 >> (LF) CGGCCGCTGA
1300282 << (RF) GCGTCCGGCG
1299925 >> CCCGCTCAGGCTGTGTCGGATGC-GCCTGAGCGGG---GCGGCCTGCGGGGGTGACGCTGCGCTACCGCCTTCGG >> 1299995
1300272 << ***********-*GT**G**GT*T***********AGT******C*T******TC***T***AG***T*CGT-** << 1300200
1299996 >> CCGCTGACCCGCTCAGGCTGTGCTGGTC-GTGC-GCCTGAGCGGG---GCGGCCTGCGTGGTGA-CGCTGCGCTA >> 1300064
1300199 << ****---***********-*GT*-*TG*T*GT*G***********AGT******C*T*C**CA*C***T***AG* << 1300130
1300065 >> CCGCCTTCGGCCGCTGACCCGCTCAGGC >> 1300092
1300129 << **G**CGT******---*********** << 1300105
Statistics
Matches: 124 (69.66%), Mismatches: 34 (19.10%), Indels: 20 (11.24%)
ATpairs: 12.90%, CGpairs: 87.10%, GTpairs: 0.00%
:i = 1300269
tupleindex: 2
intervalindex: 2
matches_in_interval: 138.0000
lowcenter: 2600179
highcenter: 2600215
testcenter: 2600197
im3: 25.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 1300327 center: 2600275 interval size: 160 g: 2
Alignment explanation
Indices: 1299947--1300013,1300262--1300328 Loop: 248 Score: 43
Left Length: 67 Right Length: 67 Average length: 67.0
3 most common centers (desc): 2600272 2600275 0
1299937 >> (LF) GTGTCGGATG
1300338 << (RF) GGGACGCGCG
1299947 >> CGCCTGAGCGGG---GCGGCCTGCGGGGGTGACGCTGCGCTACCGCCTTCGGCCGCTGACCCGCTCAGGC >> 1300013
1300328 << ************AGT******C*T******TC***T***AG***G**CGT******---*********** << 1300262
Statistics
Matches: 53 (75.71%), Mismatches: 11 (15.71%), Indels: 6 (8.57%)
ATpairs: 11.32%, CGpairs: 88.68%, GTpairs: 0.00%
:i = 1300327
tupleindex: 2
intervalindex: 2
matches_in_interval: 140.0000
lowcenter: 2600257
highcenter: 2600293
testcenter: 2600275
im3: 25.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 1300328 center: 2600512 interval size: 40 g: 1
Alignment explanation
Indices: 1300184--1300249,1300262--1300328 Loop: 12 Score: 41
Left Length: 66 Right Length: 67 Average length: 66.5
3 most common centers (desc): 2600508 2600512 2600509
1300174 >> (LF) GCTGGTCGTG
1300338 << (RF) GGGACGCGCG
1300184 >> CGCCTGAGCGGG---GCGGCCTGCGTGGTGA-CGCTGCGCTACCCCCTCCGGCCGCTGACCCGCTCAGGC >> 1300249
1300328 << ************AGT******C*T*C**CA*C***T***AG******C*T******---*********** << 1300262
Statistics
Matches: 53 (75.71%), Mismatches: 10 (14.29%), Indels: 7 (10.00%)
ATpairs: 11.32%, CGpairs: 88.68%, GTpairs: 0.00%
:i = 1300328
tupleindex: 1
intervalindex: 2
matches_in_interval: 31.0000
lowcenter: 2600504
highcenter: 2600520
testcenter: 2600512
im3: 12.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 1315259 center: 2630038 interval size: 80 g: 2
Alignment explanation
Indices: 1314779--1314815,1315223--1315259 Loop: 407 Score: 42
Left Length: 37 Right Length: 37 Average length: 37.0
3 most common centers (desc): 2630038 2630039 0
1314769 >> (LF) GCACTGCTGG
1315269 << (RF) CTGCCGGCGG
1314779 >> TGGCGGGCGCGGGCACACCGG-TGGCGGCCGCGGCGGT >> 1314815
1315259 << *****GA****G**C-*****G**************** << 1315223
Statistics
Matches: 32 (84.21%), Mismatches: 4 (10.53%), Indels: 2 (5.26%)
ATpairs: 12.50%, CGpairs: 87.50%, GTpairs: 0.00%
:i = 1315259
tupleindex: 2
intervalindex: 1
matches_in_interval: 86.0000
lowcenter: 2630026
highcenter: 2630050
testcenter: 2630038
im3: 21.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 1316637 center: 2616559 interval size: 300 g: 3
Alignment explanation
Indices: 1299874--1300096,1316464--1316685 Loop: 16367 Score: 230
Left Length: 223 Right Length: 222 Average length: 222.5
3 most common centers (desc): 2616559 2616560 2616561
1299864 >> (LF) CCGCGGGGTT
1316695 << (RF) GCTAAGCGGG
1299874 >> GAGCGGGGCGGCTTGCGTGGGTGACGCTGCGCTGCCGCCTTCGGCCGCTGACCCGCTCAGGCTGTGTCGGATGCG >> 1299948
1316685 << **G*********G*G**CA***G*****G****T**T***G**T******************G*C***G***A** << 1316611
1299949 >> CCTGAGCGGGGCGGCCTGCGGGGGTGACGCTGCGCTACCGCCTTCGGCCGCTGACCCGCTCAGGCTGTGCTGGTC >> 1300023
1316610 << **G**G***********G***A***G*****G*******T***G**T******************G*C*-*G--* << 1316539
1300024 >> G-TGCGCCTGAGCGGGGCGGCCTGCG-TGGTGACGCTGCGCTACCGCCTTCGGCCGCTGACCCGCTCAGGCTGTG >> 1300096
1316538 << *T*A****G**************G**C****G*****G*******T***G**T***************G**C*** << 1316464
Statistics
Matches: 183 (81.33%), Mismatches: 37 (16.44%), Indels: 5 (2.22%)
ATpairs: 22.95%, CGpairs: 77.05%, GTpairs: 0.00%
:i = 1316637
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2616535
highcenter: 2616583
testcenter: 2616559
im3: 50.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1316640 center: 2616716 interval size: 300 g: 3
Alignment explanation
Indices: 1300027--1300253,1316464--1316690 Loop: 16210 Score: 253
Left Length: 227 Right Length: 227 Average length: 227.0
3 most common centers (desc): 2616716 2616717 2616718
1300017 >> (LF) GCTGGTCGTG
1316700 << (RF) CCCAGGCTAA
1300027 >> CGCCTGAGCGGGGCGGCCTGCG-TGGTGACGCTGCGCTACCGCCTTCGGCCGCTGACCCGCTCAGGCTGTGTCGG >> 1300100
1316690 << ****G**G***********G**C****G*****G*******T***G**T******************G*C***G* << 1316616
1300101 >> ATGTGCCTGAGCGGGGCGGCCTGCGGGGGTGACGCTGCGCTACCCCCTCCGGCCGCTGACCCGCTCAGGCGGTGC >> 1300175
1316615 << **AG***G**G***********G***A***G*****G*******T******T******************G*C*- << 1316542
1300176 >> TGGTCG-TGCGCCTGAGCGGGGCGGCCTGCG-TGGTGACGCTGCGCTACCCCCTCCGGCCGCTGACCCGCTCAGG >> 1300248
1316541 << *G--**T*A****G**************G**C****G*****G*******T******T***************G* << 1316469
1300249 >> CTGTG >> 1300253
1316468 << *C*** << 1316464
Statistics
Matches: 191 (83.04%), Mismatches: 33 (14.35%), Indels: 6 (2.61%)
ATpairs: 23.04%, CGpairs: 76.96%, GTpairs: 0.00%
:i = 1316640
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2616692
highcenter: 2616740
testcenter: 2616716
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1330606 center: 2612078 interval size: 300 g: 3
Alignment explanation
Indices: 1281406--1281603,1330475--1330672 Loop: 48871 Score: 120
Left Length: 198 Right Length: 198 Average length: 198.0
3 most common centers (desc): 2612078 2612079 0
1281396 >> (LF) CTACCGCGAT
1330682 << (RF) GCGCGCACGG
1281406 >> CTCGAGGTCTCGCCCAACGTGTGGTGCGGCT-TCAGCCTCATCCGCGGCGGACCCGCCTTCGG-GCTGGTCGGCA >> 1281478
1330672 << **C*****CC********G*****-****CCC*CC*A**CC**********CC*C*C-*T***G*********** << 1330600
1281479 >> GCTACGAGC-AGGTGGCCGAACGGCTCGACCAGCTCATCGATCTCGGCGTCGACGCGTTCATCCTCGCGGGCAAC >> 1281552
1330599 << **G**-*G*C**********G**GC***G*C**AT*CG**GCT*****T******T*******A**A*G***A** << 1330526
1281553 >> CCGCATCTCGAGGAGGCCTACCGCGTCGGCGAGGAGGTGCTGCCGCTGCTG >> 1281603
1330525 << *****G*********GAC***A*CA*******T*C****C*****T*G*** << 1330475
Statistics
Matches: 147 (73.13%), Mismatches: 48 (23.88%), Indels: 6 (2.99%)
ATpairs: 28.57%, CGpairs: 71.43%, GTpairs: 0.00%
:i = 1330606
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2612054
highcenter: 2612102
testcenter: 2612078
im3: 49.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1331336 center: 2612099 interval size: 300 g: 3
Alignment explanation
Indices: 1280636--1280997,1331102--1331463 Loop: 50104 Score: 92
Left Length: 362 Right Length: 362 Average length: 362.0
3 most common centers (desc): 2612099 2612098 2612100
1280626 >> (LF) CTCGACGACT
1331473 << (RF) CCGCTGGCCC
1280636 >> ACGGCTACATCGACCACATGGCCGCCGTCGCGCGCGCCTCGGAATCGGCGGGCTTCCTCGGCGGGCTGCTGCCCT >> 1280710
1331463 << ***G**GC******A**G***CAA*CT***A***C***C*G**C***AAG******TG*****G****T*G**CT << 1331389
1280711 >> CCTTCCCGGTGACCGACGAT-CCGTGGGCGGTGTCGGCGGCGCTGGCCCGCGAGACCACCAC-CTACCGGTTCAT >> 1280783
1331388 << **CC*C**AC*AC***C**GC**A*G*A*TGG*G**-**GA*******************A*C**CC**-***G* << 1331316
1280784 >> GGTCGCCTTCCAGCCCGGCTTCCTGCA-CCCGGTGCAGGCGGCGCGGATGTCGGCGAGCCTGCAACGGGCCAC-C >> 1280856
1331315 << ***C**C****C******AG*CC*-**C****TG**AGA******T****C****G*-***A*CG*G*A*-**C* << 1331244
1280857 >> GGC-GGACGGTTGGT-CTACAACATCATCAGCGGCGGCGGGGGACCGGCGCAGCTCTGGTGGGGCGACAAGGTCG >> 1280929
1331243 << *G*T**C**GT*GG*C**-****C*CC*CCA******C*T**GC*TG*T*****C*CGG*AG******G*GG*** << 1331170
1280930 >> CCCACGACGACCGCTACGCGCGCACCAGCGAGTTCCTCGACGTGCTGCGCGGGGTGTGGGACGGCGAG >> 1280997
1331169 << T*T*C****G*******GC****AC*CT***T***********GC*****T**G******GC****** << 1331102
Statistics
Matches: 244 (66.30%), Mismatches: 112 (30.43%), Indels: 12 (3.26%)
ATpairs: 25.41%, CGpairs: 74.59%, GTpairs: 0.00%
:i = 1331336
tupleindex: 3
intervalindex: 1
matches_in_interval: 103.0000
lowcenter: 2612075
highcenter: 2612123
testcenter: 2612099
im3: 34.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1337218 center: 2635057 interval size: 300 g: 3
Alignment explanation
Indices: 1297642--1297998,1337059--1337415 Loop: 39060 Score: 161
Left Length: 357 Right Length: 357 Average length: 357.0
3 most common centers (desc): 2635057 2635056 2635058
1297632 >> (LF) CCATGAACGA
1337425 << (RF) GCTCAAGCGG
1297642 >> CAACAGCAGCGCCGCGTCGGCGAGCGTGCGGCCCATCGCCGCGGGATGGTCCCTGGTCCACATCACCGGGATGAC >> 1297716
1337415 << **C**T******CAA********G**************C*G**TAC******TCG*T***CG***C**T*C**CA << 1337341
1297717 >> ACCGTACTTGCTGCACCGGCCGAAGGTCGGCTTGATCGCGCTCACGCCGCAGCGGGAGG-CGGGCAACCGCGCCG >> 1297790
1337340 << C*****CGC*CT*TG***G***A*************CG**C*C*********T***G**T****-*AC**CTAC* << 1337267
1297791 >> AACCGCCGGTGTCGGTGCCCAGCGCCAGGGGCGCGTACCGCGCCGCCAGCGCCGCCGCGCTGCCACCGGAGGAGC >> 1297865
1337266 << *G*****************C*A***CGG*T**T*GTAC*****C***********CG**CTG**C***GA***A* << 1337192
1297866 >> CGCCCGCGGTGTCGTCGGTCTTCCACGGATTGC-CGACCTGCGGGGTGGCGGTCATGATGGCGAACTCGTCGGTG >> 1297939
1337191 << *T****C*T***C***G*CT*C***C**C****C**A*C**-**T**GT*GTG*GG*AT******A****C**** << 1337118
1297940 >> TGGGTGTGGCCGAGCAGCACCGCGCC-GTGCTCCCGCAGCCGCCGCCAC-ACCGTCGCGTC >> 1297998
1337117 << *****G*******GC***********G*G**CCA**-*****AA-*C**C****G****** << 1337059
Statistics
Matches: 252 (69.81%), Mismatches: 101 (27.98%), Indels: 8 (2.22%)
ATpairs: 22.62%, CGpairs: 77.38%, GTpairs: 0.00%
:i = 1337218
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 2635033
highcenter: 2635081
testcenter: 2635057
im3: 49.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1350801 center: 2701039 interval size: 160 g: 2
Alignment explanation
Indices: 1350238--1350316,1350723--1350801 Loop: 406 Score: 41
Left Length: 79 Right Length: 79 Average length: 79.0
3 most common centers (desc): 2701039 2701038 0
1350228 >> (LF) GTCGCTCGCG
1350811 << (RF) TACGGGCGTG
1350238 >> CTGTTCGGCGGCGACCTCGAGACCGCCGCGGCACGCTTCTCCGA-GGCGGCCGCGGGCCACCGCGCGGACGGCTC >> 1350311
1350801 << *******A**G***TCG**CT***GA*****A*C**G**CA***T****A*****G-***T****CGG*****G* << 1350728
1350312 >> GGTGG >> 1350316
1350727 << ***** << 1350723
Statistics
Matches: 57 (71.25%), Mismatches: 21 (26.25%), Indels: 2 (2.50%)
ATpairs: 19.30%, CGpairs: 80.70%, GTpairs: 0.00%
:i = 1350801
tupleindex: 2
intervalindex: 2
matches_in_interval: 90.0000
lowcenter: 2701021
highcenter: 2701057
testcenter: 2701039
im3: 23.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 1355811 center: 2682454 interval size: 300 g: 3
Alignment explanation
Indices: 1326643--1326888,1355566--1355811 Loop: 28677 Score: 110
Left Length: 246 Right Length: 246 Average length: 246.0
3 most common centers (desc): 2682454 2682453 2682455
1326633 >> (LF) CTCGTGCGTG
1355821 << (RF) CGTCACGTGG
1326643 >> AAGGTCGACGACGAC-CTGCCCCTGGACAAGGCGGTGCTGGTCGGCTGCGGTGTGCCCACCGG-CTGGGGCGCGG >> 1326715
1355811 << *********GG**G*C*G*T***-**G*CA***G*C****G*C************TACC****C**G**-***** << 1355739
1326716 >> CGGTCAACACCGCCGAGGTCAAGGCG-GGCCAGACCGTCGTGGTGATGGGGATCGGCGGCATCGGCATCAACGCC >> 1326789
1355738 << ************C**C***C*-*G**G***C*G*C*****G******G**GAC*******C****ACT*CGC*** << 1355665
1326790 >> GT-GCAAG-GCGCGGCGCTGGCCGGGGCGAAGAACGTCATCGCGATCGACCCGCTGCC-GAACAAGCGGGAGAAG >> 1326861
1355664 << T*G**GC*A*****-*-********G**GCGG*G*T*******GC******-**CT**G*GCT****A**A*AC* << 1355593
1326862 >> GCGATGGAGCTGGGCGCCACGCACGCC >> 1326888
1355592 << **G*GG*****G************T** << 1355566
Statistics
Matches: 178 (70.63%), Mismatches: 62 (24.60%), Indels: 12 (4.76%)
ATpairs: 21.35%, CGpairs: 78.65%, GTpairs: 0.00%
:i = 1355811
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2682430
highcenter: 2682478
testcenter: 2682454
im3: 74.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1380560 center: 2761061 interval size: 40 g: 1
Alignment explanation
Indices: 1380498--1380520,1380541--1380563 Loop: 20 Score: 46
Left Length: 23 Right Length: 23 Average length: 23.0
3 most common centers (desc): 2761061 0 0
1380488 >> (LF) GACGGTAGGA
1380573 << (RF) GCGCCCTGGC
1380498 >> GCGCCCGCTCCCCCGCGCTATCC >> 1380520
1380563 << *********************** << 1380541
Statistics
Matches: 23 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 17.39%, CGpairs: 82.61%, GTpairs: 0.00%
:i = 1380560
tupleindex: 1
intervalindex: 2
matches_in_interval: 33.0000
lowcenter: 2761053
highcenter: 2761069
testcenter: 2761061
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 1415058 center: 2648797 interval size: 300 g: 3
Alignment explanation
Indices: 1233366--1233928,1414869--1415431 Loop: 180940 Score: 292
Left Length: 563 Right Length: 563 Average length: 563.0
3 most common centers (desc): 2648797 2648796 2648795
1233356 >> (LF) GCTCGGCATC
1415441 << (RF) GAAGAGCAAC
1233366 >> CTCGGCCCGAACGGGGCGGGCAAGACCACGAC-GGTCAACATCCTGTCCACCCTGGTCACCCCGGACGCGGGCC- >> 1233440
1415431 << *****C***********************-**A****GC*******C****CA***G**CC**G**A**G***CT << 1415358
1233439 >> GG-GCGAGTGTCGCCGGGCACGACGTGGTCGC-CGAC-CCGGCGGGCGTGCGCCGCTGCATCATGTTGACCGGCC >> 1233510
1415357 << **A***G****A-*-**A******G**G*-**C***CC***T*TG-*******C**GA****CCGC****C**T* << 1415287
1233511 >> AGTTCGCCGCGCTCGACGACATGCTCAGCGGCTACGAGAACCTG-GTCATGTTCGGCAGGCTGATGGGACTGCGC >> 1233584
1415286 << **********GC*****TG*C****C*G****TG******A**GG*C*-*GTG**********G**GTA****G* << 1415213
1233585 >> AAACGA-GCCGCCCGGGCCCGTGCCGAGGAACTGCTGGT-CGAATTCGACCTCACCGACGCCGCCGGACGGCGGG >> 1233657
1415212 << CG-**GG*TT******GCC**G*CA**G**G*****G*TC**G-*********CA***A*****C**GTT**G** << 1415140
1233658 >> TGGGCACCTACTCCGGCGGCATGCGCAGGCGCATCGACATCGCC-TGCGGACTGGTCGTCCGGCC-CGACGTGGT >> 1233730
1415139 << GG**AA**************************G****AG*C***T**T*G-***T*C*C***A**C**G*-**** << 1415067
1233731 >> GTTCCTCGACGAGCCGACCACCGGCCTCGACCCGCGCAGCAGGCAGGGCGTGTGGGATCTGGTCGGCGGATT--C >> 1233803
1415066 << G*TA***********G*********A*C****************CG*T*G*****AGCC*GT**G*C*T*G*CC* << 1414992
1233804 >> CGCGCGCACGGCATCACCACCCTGCTCACCACCCAGTACCTGGAGGAAGCCGACGCGCTCTGCGACCGGATCATC >> 1233878
1414991 << ***-**-*C****G***C*A******C*****C********G***********AGTT**CCG***A**G***CG* << 1414919
1233879 >> GTCATCGACCACGGCGTCGTCATCGCCGAGGGCACCGCCGACGAACTCAA >> 1233928
1414918 << **CG*****CC****TG*T**C**************G*******C***** << 1414869
Statistics
Matches: 413 (71.83%), Mismatches: 138 (24.00%), Indels: 24 (4.17%)
ATpairs: 28.09%, CGpairs: 71.91%, GTpairs: 0.00%
:i = 1415058
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 2648773
highcenter: 2648821
testcenter: 2648797
im3: 72.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1418662 center: 2837284 interval size: 40 g: 1
Alignment explanation
Indices: 1418621--1418641,1418643--1418663 Loop: 1 Score: 42
Left Length: 21 Right Length: 21 Average length: 21.0
3 most common centers (desc): 2837284 0 0
1418611 >> (LF) CATCCTACGA
1418673 << (RF) GCGGTGGGGG
1418621 >> CGCACGCCCCGCGATCGGTCC >> 1418641
1418663 << ********************* << 1418643
Statistics
Matches: 21 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 19.05%, CGpairs: 80.95%, GTpairs: 0.00%
:i = 1418662
tupleindex: 1
intervalindex: 2
matches_in_interval: 24.0000
lowcenter: 2837276
highcenter: 2837292
testcenter: 2837284
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 1462615 center: 2823836 interval size: 300 g: 3
Alignment explanation
Indices: 1358638--1361801,1461993--1465204 Loop: 100191 Score: 2009
Left Length: 3164 Right Length: 3212 Average length: 3188.0
3 most common centers (desc): 2823842 2823836 2823797
1358628 >> (LF) CAGCGCTGCG
1465214 << (RF) AAGAAGCTGA
1358638 >> CCCAGTCGTCGATCA-CGCGTTCGGCGGACTCGCCGGGCTCGCCGTCGGTGAGCACGTCCCGGCACAGTGCCCGG >> 1358711
1465204 << ******T*C*****AA*A***-******A***GA*G**T******C***T**********T**CA***G*TC**G << 1465131
1358712 >> ATGGTGTCGTAGAGCTCGTCGCGCAGGGCCACCCGTGCCAGCGCGTTCCACTTGGT-GCCGCGCTCGAGCCGCGA >> 1358785
1465130 << *TG*T*G****G*AC**********GG**C*C**AC**********C***CG-***G************TA*C*A << 1465057
1358786 >> GACCGCCATCAGCTGCGGCACCACGCCCAGCCGCTCGCCGAGCAGGTAGTACACCGGCGCC-ACCGCCGCCGCCG >> 1358859
1465056 << G******AC****T**GTTA*C*AGAAC**CA*T***AA****CG********C**-****G***A*-*A***** << 1464984
1358860 >> GGC-GCCCGGTGGCCGCGGCGACCTCGATGATGTCGAGCAGGGCGAAGCGGTCCAGCAGCAGCGC-CACC-CGCT >> 1358931
1464983 << AG*G*CA*****TACA******AC****CT*****G*****G*C***GT*T*A******CG-**TT****A**C* << 1464910
1358932 >> CGGCCAGCTCC-GCGGGCACCCCGCGATCGGTCAACGCGGCGGTGCGGGTGCGC-AGCGCGGCGGCGTCGCGGCC >> 1359004
1464910 << -**********T****-*C*******GC**TGC*C*A****G*T-*A***GC*AC****A***GT*T*CTA**** << 1464838
1359005 >> GGACAGCCACC-CGGCCACCCGCGGGGTGAGTTCGGCGATCCCGCCG-CGGAACCGCGC--GATCTCCTCGGCCA >> 1359075
1464837 << *GC******CCA****-***AA***A*G*******-**--*T*****A***G*AT***CAA*******C**G*C* << 1464767
1359076 >> CCGCCAGCGGCTGCGGGCGTTGGGTCAGCATCCAGCGCGCGGCGCGGTCGAGCAAGCGGC-GG-CTGAGCACGAT >> 1359148
1464766 << ****C*A******C**G**C*A*A*C****C***G****T***G*****G**ACA***GAA**A**G-*-*-*A* << 1464695
1359149 >> C-AGCTCGTCGGTGAGGTCCGCGCTCAGGCCCGCGCCGCGGATGTCGCGCC-ACAGTCCGGGCAGGTCGAACACC >> 1359221
1464694 << *C*********GCG*GGC**T*GCCT*A*A*C**GCT*******-***A**G***ACC*******T*****C*A* << 1464621
1359222 >> GCGGTGACGATCGCGAACGCGCGCACCGCGTCGGCGTTG-TCGGCGCCGGACTCCTCGGTGAGCCGGTAGGCGTA >> 1359295
1464620 << **TGG*C*GCGC*****C****************A*C**G***-*****GA*******A********T******* << 1464547
1359296 >> GGTGATGCCGCCGTTGTCCACCACGTCGTTGGTCAGCACCGTCGCCACGATCTCGCGGCGCAGCGGATGCGCGGC >> 1359370
1464546 << *G************T***C****AG******TGC*A**A***C*AC******************G*C***AAGAA << 1464472
1359371 >> GATCGCCTCGGCGTACTCGGCGCGTAGGCGCTGCGGGAAGTAG-CCGGCCAGGTGCTCGGCGAAGGCCGGGTCGT >> 1359444
1464471 << ***C**TG**G**T**GC**A***G**GC**CA*********GA*****-**GG**C*G*****TAT*GGG*CT* << 1464398
1359445 >> CGGGCAG--CGGACCGGCCAGCAGATCGGCCCGCAGGGCGAGCTTGACGTGCGCGAGCAGCGTGGCAAGCTCCGG >> 1359517
1464397 << *******TA****--*A*C*****C******AAC**G*T******G********G*AC**TA****G******** << 1464325
1359518 >> TGAGGTGAGGCCATGCCCGGCGCGGCGGCG-CGCGGCGATCTCCTGC-TTCGACGGCAGCACCTCCAGGTCGCGG >> 1359590
1464324 << C***TGG**G**A*GC***AA*AG******C***AA*-*C****-**C************C*******A****** << 1464252
1359591 >> TCGAGGCCGTACTCGC-GCTCGAGGT-GGTCGATGAGCCGGCCGTGCACGGCCAGCGAG-GCGACCGCGCGGGCG >> 1359662
1464251 << **G******GCT-***A*********G***-***G**C**GTA**A***TAA*CA*TAGG***C*CG*A**TT*- << 1464180
1359663 >> CGGGCGGTGCCCATCAGCTGGTTCTGGGACTCGTTGTCGGCCAACACCA-GCCGGCAGACCTCGGCGGCCATCTC >> 1359736
1464179 << **G*T*T**********CTT**********T********GC********A*A*G**-*******A***A****CT << 1464106
1359737 >> GGCCAGCAGCGCGTTGCGTTCGGCGGTGCTCAGCCGTCCGGCGCCCACCAGTCCGTCGAGCAGGATCTTGATGTT >> 1359811
1464105 << ***********C************G*G*CC****T****G****AC****GT***********G*G********* << 1464031
1359812 >> GACCTCGTGATCGGAGCAGTCCACCCCGGCCGAGTTGTCGAGGGCATCGGTGTTGATCCGGCCGCCCGCGCGGGC >> 1359886
1464030 << ************************C**G**C********G**G**C********G***AA******CAA****GT << 1463956
1359887 >> GTATTCGATACGGCCGCGCTGGGTGAAGCCGAGATTGCCGCCCTCGCCGACCACCCGGGCGCGCACCTCGGCGCC >> 1359961
1463955 << *T*G********A******CG****CG******C***********T****A*******T*G****CC**AAAA** << 1463881
1359962 >> GTCGACGCGGACCGCGTCGTTGTTCTTGTCGCCGACGTCCAGCGCCG-TCTCGGTGGCCGCTTTGACGTAGGTGC >> 1360035
1463880 << **AG**G**G****C*******CT************G**C-***AA*C*****AG**AC**G****A******** << 1463807
1360036 >> CGATGCCGCCGTTCCACAGCAGATCCACCGGCGCGCGGAGAATGGCCCGGATCAGTTCCGGCGGGGTCAGCCTGG >> 1360110
1463806 << **********************A*C*********GT*G**C**G**C**G*G************G*GC***CT*T << 1463732
1360111 >> TCACCTCGGCGGGCAGGCCGAGCGCCGCGCGCGCCTGCGGGCTGATCGGCACCGATTTCACCGTCCGCTCCCACA >> 1360185
1463731 << G***C***A****************C**G*AC***********************************T******* << 1463657
1360186 >> CCCCGCCGCCCGCGCTGATCAACTCGGGCGAGTAGTCCGCCCACGACGAGCGGGGC-GTGTCGAACAGGCGC-GC >> 1360258
1463656 << *C*******************C*CT**ACAG******C*****C********G***T*G*-***********A** << 1463583
1360259 >> GCGTTCGGCGTAGGAGGTGGCCGCGTCGGGGTCGGGGTCGAGGAAGATGTGGCGGTGGTCGAAGGCCGCGACCAG >> 1360333
1463583 << -**G**GGC******GGC***C**T**************************G**************C******** << 1463509
1360334 >> TCGGATGTGCCTGCTGGCCAGCATCCCGTTGCCGAACACGTCACCGCTCATGTCGCCGATGCCCACCACGGTGAA >> 1360408
1463508 << G*********AG*CT*TC******C*****************C***********T********C**C******** << 1463434
1360409 >> GTCGTCGTGCCGCGGGTCGAGACCCAGTTCGCGGAAGTGCCGCTTCACGCTCTCCCAGGCGCCGCGGGCGGTGAT >> 1360483
1463433 << ***G***GA*A*C*AT****AC****A******************C***********G*****G**G******** << 1463359
1360484 >> GCCCAGCGCCTTGTGGTCGTAGCCGACCGAGCCGCCGGAGGCGAAGGCGTCGCCGAGCCAGAAGCCGTGCGCGGC >> 1360558
1463358 << *****A******************GC****G*************************************T-**A** << 1463285
1360559 >> GG-CCACCTCGTTGGCGATGTCGGAGAACGCCGCGGTGCCCTTGTCGGCGGCGACCACGAGGTAGGTGTCGTCGC >> 1360632
1463284 << **C****C********************C*A*********************G*****G**************** << 1463210
1360633 >> CGTCGTGGCGGCGCACCCGCGCGGGCGGCCGCACGGCGCCGGTCGCGCGGTCCACCGAGTCGGTGATGTCGAGCA >> 1360707
1463209 << *****G****GTG******C*********TG***G******G*C**GT*T**C**CAA********C******** << 1463135
1360708 >> GCCCGCCGATGAAGGTGCGGTAGCAGCGCACCCCCTCGGCGCGGTGGGCCTCGCGGTCGGCGGCGGGGTCGCCGG >> 1360782
1463134 << *C***CT******G*****T******CG***C*********CT*T*G****CG***********G********** << 1463060
1360783 >> TGCTC-GCGGGCGGGCGCTTGACCACGAATCCGCCCTTGGCGCCCGCGGGCACGATGACGGCGTTCTTCACCGCC >> 1360856
1463059 << *****A****-***GA*************G********G******T*G***********G*************** << 1462986
1360857 >> TGCGCCTTGGCCAGGCCGAGCACTTCGGTGCGGAAGTCCTCCTTGCGGTCCGACCACCGCAACCCGCCGCGGGCC >> 1360931
1462985 << ********GT**********C*AG*****G************TCG***********C****CC********G**C << 1462911
1360932 >> ACCGCACCGAAGCGCATGTGCACCCCCTCCACGCGGGGCGAGTACACGTAGATCTCGAAGTGCGGGCGCGGCAGC >> 1361006
1462910 << ****CG**********C******C********G***************T**********A*****AAAC***AAC << 1462836
1361007 >> GGCAGTTCCGGAATCCGGCGCGGGTCGAATTTCAGTGCCAGGCAGTCGGGTT-CGTGGCCGGGACCGCCGAG--- >> 1361079
1462835 << ****T***C*GC***AG******G**G*GG**C*AG*TC*G*A*****G*GCT*TG*G***G*A*-*A****GTA << 1462762
1361078 >> GTAGTGATTGGTCCGCAGCGTCGCCAGGA-CGGCGCCGAGGTAGCCGCGCAGGATGCGGTCGGTGTCGAGTCCCG >> 1361151
1462761 << *****TC*****C*****C**C**AAA**A*T*-*******TA*C******************G***G**C*ACT << 1462688
1361152 >> GCACCTCGG-CGATG-GTGCGCTCGA-GCCGCTCGCGCAGCGCGTCGGCGTCACCCGCGGTGCCG-T--CGGGGT >> 1361220
1462687 << G***C-***A*****G**A***C*TGG**C**-*A*-****A**CA****GCAA*C****T*T**C*CA****** << 1462616
1361221 >> CGAAGCGGGCTTCGAACAGCCGCACCAGC-GCGCGGGTCGG-GCCCGGGTGTGCGCCG-AGCACGGTGGCGATGT >> 1361292
1462615 << **********GC*******CAG*******T**G***--**TA*A******TC**-*T*G******GCG******* << 1462544
1361294 >> -GGTCGGCGCTGTAGGGGAAGCCGCCCTGGCGCAGGTAGTTGGCGTAGGCGCGCAGCACGGTGACCTGGCGGTGG >> 1361366
1462543 << A****A*-******G**T**T***C****AA***T***A**G*******A********AG*T****CGT**GGTG << 1462470
1361367 >> TCCAGGCCCGCCCGG-GCGACCAGCTCGTTGAAACGGTCGGCCTCGGCGCGGCCGTGCCAGATCGCGGCGCAGG- >> 1361441
1462469 << CT***G*CC*****GT**-*************CA*G***************G****T***G*****G***T***G << 1462396
1361441 >> -T-G-T---C-GGT-GCAGC-GGC-GTGC--GAAGTCGGCC-T--C-G--TCCAGCGGCTCGGTG---AG--CAC >> 1361491
1462395 << G*G*C*CTT*G***G**-**T***G****GG*CA******CC*CT*G*TG****T*T*A****G*AGG**TA*** << 1462322
1361492 >> G-TCG-GCGGGGTAGCGCAG--GGT--GAACCGGT-A-CAGGCGGCAGTCG-AT-TCCGGCAG-CGGTGGTCAG- >> 1361556
1462321 << *C***T***G***-******GT***GG*CC*C**GG*C*****G*T*T***A*CT***T***GA***G*AG***G << 1462248
1361555 >> GC-----GGTAGGGCCGCTCGTCGAGAACGTGCACGCCCAGGCTCTGCAGGATCGGCATCACCTCGCTCAGCGAG >> 1361624
1462247 << **GTGGG******************GG**G*GC*****************G*C*****C*****C********** << 1462173
1361625 >> GCGGCCCGC-CCGGCGACATACAGGGTGAGCCGCCACTCGCCGGG---GGTG-CCGGGCAGCCGTTCCATGCGCA >> 1361694
1462172 << TA*-*****C***G***AC**C*******T******CCT******GAG**G*A******A**-*T*TC*CTA**A << 1462100
1361695 >> GATCGACCGCGCCGTCGTCGAGCGCTTCGAGCCGTCCGAGGTCGGCG-AGGGCCCGCTCGGGGGAGGTGTCGCGC >> 1361768
1462099 << *C****AC**T***C**C*****GC***G*****CC***A****-**G**G**C**C*AG***GA*TT***GA** << 1462026
1361769 >> TTATAG-CCTTCGGGTATGACCGCGCTGTAGTGC >> 1361801
1462025 << **C***C***G****T*C*GC*G***-****G** << 1461993
Statistics
Matches: 2414 (74.07%), Mismatches: 703 (21.57%), Indels: 142 (4.36%)
ATpairs: 26.93%, CGpairs: 73.07%, GTpairs: 0.00%
:i = 1462615
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2823812
highcenter: 2823860
testcenter: 2823836
im3: 74.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1481814 center: 2827073 interval size: 300 g: 3
Alignment explanation
Indices: 1345096--1345673,1481397--1481974 Loop: 135723 Score: 133
Left Length: 578 Right Length: 578 Average length: 578.0
3 most common centers (desc): 2827070 2827073 2827074
1345086 >> (LF) CGAGATCGGC
1481984 << (RF) CTGGGACGGC
1345096 >> TACGACGCACTGGTTCTGGCCACCGGTTCGGTCAAC-CGGCCGCTGCGGGTACCCGGCGCGGAACTGGCCGGCGT >> 1345169
1481974 << ******TTC****GC********C**G***T-*CG*C****C*A***G***C********G**GCGTG****C** << 1481901
1345170 >> GCACGCGCTGCGCACCCTCGCCGACGCGCGGGCACTGCGGGGAGC-GCTGGC-CACGGCGAGTGCGGTGCTGGTG >> 1345242
1481900 << *A**T*T********CT***T************C***CGG**-**A*A*G**C*C****-**-**AG-**-*T*G << 1481831
1345243 >> GTGGGCGCCGGCTTCG-TCGGGCTCGAATTCGCCGCCGTCGCCCGTGCCCGCGGCCTGCCCG-TGACGGTGCTCG >> 1345315
1481830 << **G*****C**-**C*T***********C*C*******GC**C**C***-**G*T****C**C*G**G**GC*C* << 1481758
1345316 >> ACGCCGGTTCCCGGCCGCTGGCCCGCGCGGTGTCCGAACCGATCTCGGCGCAC-GTCGCGGCGGC-T-CACCGGG >> 1345387
1481757 << *CT***GCG*C*T*******TACC**G**G*--*C*GG*C**CT*C*****CCA**A-**G**T*G*C*****G* << 1481686
1345388 >> CCGCG-GGCATCGATCTGCGCCTGGGCGAATCGG-TGGCC-CGGTT-CGTC-GGCGCGGACGGGCG-GGTGCGCG >> 1345456
1481685 << *-**TG***C****G*****C*******GC-**GG*G*T*C*G**GT*GT*G**C**G*****-**G****TG** << 1481614
1345457 >> G-C-G-CGGTCGGCACCGGCGGGACCGAGTACCGGGCCGATCTGGTGCTGGTGGGGATCGGCGCGGTGCCACGGG >> 1345528
1481613 << *T*A*C**G*C*G*CT******G****A*C-*-**-****GCGG**G***T***G*C*C*******G***CTTGT << 1481542
1345529 >> TCGAGCTGGCCGAGCGG--GCCGGGCTGGCGGTGGCCGACGGGATCGTCGTCGACGGGCGCCTGCGCACCGCCGA >> 1345601
1481541 << ***G***G**-*-****TA********G*******C*TG***GC*CG*C**C****G*T*A*********TC*** << 1481469
1345602 >> CCCGGCGATCTACGCCGTCGGCGACTGCGCCGCACACCCGCACCCGCACGCCGGGACCCGCATCCGGCTGGA >> 1345673
1481468 << ***G*TG***CA*************TA*****T***CC*G*****G*C*GA***GCC***C*****GC**** << 1481397
Statistics
Matches: 400 (67.00%), Mismatches: 159 (26.63%), Indels: 38 (6.37%)
ATpairs: 19.50%, CGpairs: 80.50%, GTpairs: 0.00%
:i = 1481814
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 2827049
highcenter: 2827097
testcenter: 2827073
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1493525 center: 2902208 interval size: 300 g: 3
Alignment explanation
Indices: 1408683--1408716,1493492--1493525 Loop: 84775 Score: 41
Left Length: 34 Right Length: 34 Average length: 34.0
3 most common centers (desc): 2902208 2902209 0
1408673 >> (LF) GAGGCGGCGG
1493535 << (RF) CGCTCGTCGT
1408683 >> CCGCCGCGGCCGAGGACGCCGCGGCCGAGGC-GAC >> 1408716
1493525 << ***************GC***A-*********T*** << 1493492
Statistics
Matches: 30 (85.71%), Mismatches: 3 (8.57%), Indels: 2 (5.71%)
ATpairs: 10.00%, CGpairs: 90.00%, GTpairs: 0.00%
:i = 1493525
tupleindex: 3
intervalindex: 1
matches_in_interval: 109.0000
lowcenter: 2902184
highcenter: 2902232
testcenter: 2902208
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1505617 center: 2579309 interval size: 300 g: 3
Alignment explanation
Indices: 1073675--1073831,1505478--1505634 Loop: 431646 Score: 70
Left Length: 157 Right Length: 157 Average length: 157.0
3 most common centers (desc): 2579309 2579312 2579307
1073665 >> (LF) AAGGAGCATT
1505644 << (RF) GAGCCGTGCC
1073675 >> TCGACGTGGTCGTCGTGGGCGGCGGCGTGGTCGGCGCGGGCATCGCGCTGGACGCGGCCACCCGCGGCCTG-G-A >> 1073747
1505634 << ********G*C**C**G************TG***A******CGC**T**G*****G***A*C*****T***G*C* << 1505560
1073748 >> CGTGGCGCTGGTGGAG-G-CACGTGACCTCGCCTCCGGCACGTCGAGCCGCTCG--T-CGAAGATGTTCCACGGC >> 1073817
1505559 << *G-*A-**********G*C****--****C**C*CC******---*****C*C*TC*A*G**TG*GC*C****** << 1505492
1073818 >> GGCCTGCGCTATCT >> 1073831
1505491 << **T*****C***** << 1505478
Statistics
Matches: 118 (71.95%), Mismatches: 32 (19.51%), Indels: 14 (8.54%)
ATpairs: 27.12%, CGpairs: 72.88%, GTpairs: 0.00%
:i = 1505617
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 2579285
highcenter: 2579333
testcenter: 2579309
im3: 47.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1516475 center: 2935510 interval size: 300 g: 3
Alignment explanation
Indices: 1419026--1419152,1516357--1516484 Loop: 97204 Score: 49
Left Length: 127 Right Length: 128 Average length: 127.5
3 most common centers (desc): 2935510 2935511 2935513
1419016 >> (LF) GCGGGGCCTG
1516494 << (RF) GCAGTGCCAG
1419026 >> CTGCGCGACGGCCTCGGCGACCGGCTCCGGAGCGGGAG-CG-GGAGCCGGC-TCGGCCGCGGGCGCGGCCTCGGC >> 1419097
1516484 << ****A**A***********C**---**C**GA***AC*T**G**A*A****G***A**A**************** << 1516413
1419098 >> GACCGGGGCGGCCTCGACCTGTTGCTGGGCG-GCGG-GCTGCTGCTCGGCCGCG-AGG >> 1419152
1516412 << GAACG*****A*C-**AA*C*G-**C*G**AA****G**T**********C***C*** << 1516357
Statistics
Matches: 94 (70.68%), Mismatches: 28 (21.05%), Indels: 11 (8.27%)
ATpairs: 8.51%, CGpairs: 91.49%, GTpairs: 0.00%
:i = 1516475
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 2935486
highcenter: 2935534
testcenter: 2935510
im3: 43.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1518433 center: 2537925 interval size: 300 g: 3
Alignment explanation
Indices: 1019492--1019522,1518403--1518433 Loop: 498880 Score: 47
Left Length: 31 Right Length: 31 Average length: 31.0
3 most common centers (desc): 2537925 0 0
1019482 >> (LF) TGGGCGGCGG
1518443 << (RF) GAGCCACCCG
1019492 >> GCGGCGCTGTGGGCGGCGGGGGCGGCGGCGC >> 1019522
1518433 << *******G**A*********G********** << 1518403
Statistics
Matches: 28 (90.32%), Mismatches: 3 (9.68%), Indels: 0 (0.00%)
ATpairs: 3.57%, CGpairs: 96.43%, GTpairs: 0.00%
:i = 1518433
tupleindex: 3
intervalindex: 1
matches_in_interval: 140.0000
lowcenter: 2537901
highcenter: 2537949
testcenter: 2537925
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1548193 center: 3095987 interval size: 80 g: 2
Alignment explanation
Indices: 1547794--1547834,1548153--1548193 Loop: 318 Score: 40
Left Length: 41 Right Length: 41 Average length: 41.0
3 most common centers (desc): 3095987 3095988 0
1547784 >> (LF) GCGTGGGGTG
1548203 << (RF) CTGGTCTGGT
1547794 >> CCGCGCAGGCACC-GGCGGACATCGCCGCCGACGAGTTCGCC >> 1547834
1548193 << *****-*A*****T***G***GT***A*T************* << 1548153
Statistics
Matches: 34 (80.95%), Mismatches: 6 (14.29%), Indels: 2 (4.76%)
ATpairs: 20.59%, CGpairs: 79.41%, GTpairs: 0.00%
:i = 1548193
tupleindex: 2
intervalindex: 1
matches_in_interval: 44.0000
lowcenter: 3095975
highcenter: 3095999
testcenter: 3095987
im3: 18.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 1554428 center: 2868821 interval size: 300 g: 3
Alignment explanation
Indices: 1313448--1314496,1554325--1555373 Loop: 239828 Score: 2023
Left Length: 1049 Right Length: 1049 Average length: 1049.0
3 most common centers (desc): 2868821 0 0
1313438 >> (LF) ACCGATTCGG
1555383 << (RF) AGGGGGGAAA
1313448 >> CTAGGCGGTGTCTCGAAGTAGGTGTCGAGGTCACAGCCATTGGTCGATGGCGGCGATCTGGATGACGGCGAGGTA >> 1313522
1555373 << *************************************************************************** << 1555299
1313523 >> GCGGGTGGCGAGTTTCTCGTAGCGGGTGGCGACGGCGCGGTGTTGTTTGAGTCGGTTGATGCCGCGTTCGATGGT >> 1313597
1555298 << *************************************************************************** << 1555224
1313598 >> GTTGCGGTGCCGGTAGATCTCACGGTCGAACGCCGGTGGTCGCCCGCCCGCGCGGCCACGATTGCGGCGGTGTCC >> 1313672
1555223 << *************************************************GC*********************G*C << 1555149
1313673 >> TGCTTGATCTGACGGGACCGGGATCGTGGCGGGGATACCACGCTCGCGCAGGTAGGTGCGGTTGGCGGCCGAGGA >> 1313747
1555148 << C*T********G*************************************************************** << 1555074
1313748 >> ATACGCCTTGTCCGCCAGTACCCGGTCCGGACGCACGCGTGCCCGTCCACGACCCAGGCGCGGGACCCGGATGCC >> 1313822
1555073 << *******************************************************************A******* << 1554999
1313823 >> GTCGAGGACTCCGGCGAACTGGGGGCTGTCACCGGCTTGACCGGCGGTGAGCAGCAACGACAACGGACGCAGGTG >> 1313897
1554998 << *************************************************************************** << 1554924
1313898 >> GTGTTCGCAGGCCAGATGGAGTTTGGTTCCCCATCCGCCCCTCGACCGCCCGAGTGCGTGATCGGCCGGTTCGTT >> 1313972
1554923 << *************************************************************************** << 1554849
1313973 >> GTGGTAGCCGCCGGGTGGTTCGGCCTGGCGGTCGCCGTCGCGGCGGGCCCCGGCGGCGTGGGAATGGGCACGCAT >> 1314047
1554848 << *G************************************************************************* << 1554774
1314048 >> GATCGTGGAGTCCACGCTGACCATCCATCCGATCTGTCCGGCGGCGTCGGCGATCGCCTGAAGTTGCCGCAGCAC >> 1314122
1554773 << *************************************************************************** << 1554699
1314123 >> ATGTGCCCACACCCCGGCCCGGGTCCAGCGGCGGAACAGTGCGTAGATCGCCTGCCAGGACCCGTACTGCGGTGG >> 1314197
1554698 << *************************************************************************** << 1554624
1314198 >> GATGTCCCGCCACGGGCAGCCGACCCGGATCCGCCAGCGGATCCCGTCCAGCAGGCGGCGTCGGGTCCATCTCGA >> 1314272
1554623 << *************************************************************************** << 1554549
1314273 >> GGGGCGGCCGGGTCGTTTCGGGGTGGGTAGCAGCGGTTCCAGCCGTGCCCATTGGGCATCGGACAGATCCGCTCG >> 1314347
1554548 << ***************************C*********************************************** << 1554474
1314348 >> CGCGGTCACCGCTAGAGTGGTCACGAGGTCTCCGGTGTTCAGTTGAATCTTGGTCGATCAACCAACTACCGGAGA >> 1314422
1554473 << *************************************************************************** << 1554399
1314423 >> CCTCGCCATATCTCAAACCCCCAGCCTGCCAAACAGTCCCACACCACCAGCGCTACTTCGAGACACTGCCTAGC >> 1314496
1554398 << *********************************************AC*C**T**************G******* << 1554325
Statistics
Matches: 1034 (98.57%), Mismatches: 15 (1.43%), Indels: 0 (0.00%)
ATpairs: 32.11%, CGpairs: 67.89%, GTpairs: 0.00%
:i = 1554428
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2868797
highcenter: 2868845
testcenter: 2868821
im3: 96.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1554602 center: 3023876 interval size: 300 g: 3
Alignment explanation
Indices: 1468526--1469493,1554388--1555347 Loop: 84894 Score: 605
Left Length: 968 Right Length: 960 Average length: 964.0
3 most common centers (desc): 3023873 3023876 3023880
1468516 >> (LF) CGCCCTCACT
1555357 << (RF) TCATCCACAG
1468526 >> GAGTTCGGAGCCACTGGTTGATCACAGCGATGTGGATGGTGGCCTGGTACCGGACGGCGAGCTTGTCGTACCGGG >> 1468600
1555347 << ***C**TG*****A****G***CC*C*****G******TG***CT****C***CA******A**G*****C**** << 1555273
1468601 >> TGGCCACGGCACGATGTTGTTTGAGCTGGTTGATACCCCGTTCGACCGCATCGCGATCGCGATGGACAACCGGGT >> 1468675
1555272 << ****C*****C**C***********AG*******C**C*******AC*AC*A***C*CG**C*T**AGA*TG*** << 1555198
1468676 >> CGAACGCCGGAGGCCGACCGCCGCTCGCA-CCACGATTACGGCGATTGGCGGCCT-GATCCGCTGGAACCGGGAT >> 1468748
1555197 << **********A**A**G*****G*C-**CC********C*****C*-*G***CT*A****A**G**C******** << 1555125
1468749 >> CGTCGCCCGGATCCCATGCCTGCGCAGCCATGCCCGGTTCGCGCGAGTGGAATACGCTTTGTCGGCCAGTACTCG >> 1468823
1555124 << ***C**CC****T***G**AG******CA*C*AC*****C***CGG*T*********G*****G********G** << 1555050
1468824 >> CTGCGGCCGTACCCGCGCCCGCCCACCACCGAT-CTTGGCGACCTCGATTTCGTCGAGCACGGTCGTGAACTGTG >> 1468897
1555049 << C*G***T**G**C**A*****A****C***G*CC*CG**-*****C***CG*******C**AGGC*G******C* << 1554976
1468898 >> GACTATCAGCTGCTTGACCAGGCG-TGACCAGCAGCGACAACACTCGGCAGCCC-TGTTCACACGCCAGATGCAG >> 1468970
1554975 << *C**C***G*C********-****C***C*****T*******CCT**-***CACC*****C**C********C** << 1554903
1468971 >> CTTTGTCGTCCAGCCACCCCGCGACCGACCCAAACCATGATCAGCCGGCTCGAGCTGACCGTCGCCGCCCGGTGG >> 1469045
1554902 << A**C**AGG***A**C****A******G**C*CAC*C*****C*****A***A--**-*C**T******C***** << 1554831
1469046 >> CTCGGCCTGGGCGG-CACCGTCACGACGGGCTCCTGCGGCGTGTTGGTGGGCGCGTATGATCGTCGAGTCCACAC >> 1469119
1554830 << A*********-***A*C*****C**C*****G**C********CCTT*****T**G********C********C* << 1554757
1469120 >> TCACCTGCCAGCGGATCGATCCCGTCGCGTCGGCGAAGACCTGCAGCATTTTCAC-GATCAACCACC-ACACCCC >> 1469192
1554756 << *C***TA***A*G****AC***C*GC**********AGC****T**--**CG*C*T*GT**ACAC**G******* << 1554684
1469193 >> GCCCCGCTGCCACCGCCTGAACAACCCATAGACCGCCGACCAGGACCCGTATTGCGGCGGCACGTCACGCCAGGG >> 1469267
1554683 << *C****CCA***C**C*C*****CAC*C****A****AC************G*****A**C*A***G*****G** << 1554609
1469268 >> GCAGCCGACCCGGGTCCGCCACCGGATCCCGTCGATGAGCTGCCGTTTGGTCCACATCGGCGGGCGGCCCGC-CT >> 1469341
1554608 << *************T*******C***********G*CG**CG*C***GC******AG***TC********C*CA*C << 1554534
1469342 >> TCTTCGGTCGGGGCAGCAACGGCACCAACCGCGCCCACTGGGCATCGGTCAGGTCCGCTCGCCCGGCCACCGCTA >> 1469416
1554533 << *-*****CCA***C****C***AA***C***A*****A**********T***T*********C***A******** << 1554460
1469417 >> CGCTGGTCACGAGGTCTCCGGCACTGATTCAGGTTTG-CTTGGTCGCTAACCCGAACTACCGGAGACCTCACCCA >> 1469490
1554459 << CTC******************---**-*****A*CTTA********T*G*T**-****************C**-* << 1554391
1469491 >> TAT >> 1469493
1554390 << *** << 1554388
Statistics
Matches: 719 (73.52%), Mismatches: 231 (23.62%), Indels: 28 (2.86%)
ATpairs: 30.88%, CGpairs: 69.12%, GTpairs: 0.00%
:i = 1554602
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 3023852
highcenter: 3023900
testcenter: 3023876
im3: 78.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1564601 center: 2878987 interval size: 300 g: 3
Alignment explanation
Indices: 1313447--1314495,1564492--1565540 Loop: 249996 Score: 2058
Left Length: 1049 Right Length: 1049 Average length: 1049.0
3 most common centers (desc): 2878987 0 0
1313437 >> (LF) CACCGATTCG
1565550 << (RF) AGCGGCGCCG
1313447 >> GCTAGGCGGTGTCTCGAAGTAGGTGTCGAGGTCACAGCCATTGGTCGATGGCGGCGATCTGGATGACGGCGAGGT >> 1313521
1565540 << *************************************************************************** << 1565466
1313522 >> AGCGGGTGGCGAGTTTCTCGTAGCGGGTGGCGACGGCGCGGTGTTGTTTGAGTCGGTTGATGCCGCGTTCGATGG >> 1313596
1565465 << *************************************************************************** << 1565391
1313597 >> TGTTGCGGTGCCGGTAGATCTCACGGTCGAACGCCGGTGGTCGCCCGCCCGCGCGGCCACGATTGCGGCGGTGTC >> 1313671
1565390 << **********************************A**************************************** << 1565316
1313672 >> CTGCTTGATCTGACGGGACCGGGATCGTGGCGGGGATACCACGCTCGCGCAGGTAGGTGCGGTTGGCGGCCGAGG >> 1313746
1565315 << *************************************************************************** << 1565241
1313747 >> AATACGCCTTGTCCGCCAGTACCCGGTCCGGACGCACGCGTGCCCGTCCACGACCCAGGCGCGGGACCCGGATGC >> 1313821
1565240 << *************************************************************************** << 1565166
1313822 >> CGTCGAGGACTCCGGCGAACTGGGGGCTGTCACCGGCTTGACCGGCGGTGAGCAGCAACGACAACGGACGCAGGT >> 1313896
1565165 << *************************************************************************** << 1565091
1313897 >> GGTGTTCGCAGGCCAGATGGAGTTTGGTTCCCCATCCGCCCCTCGACCGCCCGAGTGCGTGATCGGCCGGTTCGT >> 1313971
1565090 << *************************************************************************** << 1565016
1313972 >> TGTGGTAGCCGCCGGGTGGTTCGGCCTGGCGGTCGCCGTCGCGGCGGGCCCCGGCGGCGTGGGAATGGGCACGCA >> 1314046
1565015 << **G************************************************************************ << 1564941
1314047 >> TGATCGTGGAGTCCACGCTGACCATCCATCCGATCTGTCCGGCGGCGTCGGCGATCGCCTGAAGTTGCCGCAGCA >> 1314121
1564940 << *************************************************************************** << 1564866
1314122 >> CATGTGCCCACACCCCGGCCCGGGTCCAGCGGCGGAACAGTGCGTAGATCGCCTGCCAGGACCCGTACTGCGGTG >> 1314196
1564865 << *************************************************************************** << 1564791
1314197 >> GGATGTCCCGCCACGGGCAGCCGACCCGGATCCGCCAGCGGATCCCGTCCAGCAGGCGGCGTCGGGTCCATCTCG >> 1314271
1564790 << *************************************************************************** << 1564716
1314272 >> AGGGGCGGCCGGGTCGTTTCGGGGTGGGTAGCAGCGGTTCCAGCCGTGCCCATTGGGCATCGGACAGATCCGCTC >> 1314346
1564715 << ****************************C********************************************** << 1564641
1314347 >> GCGCGGTCACCGCTAGAGTGGTCACGAGGTCTCCGGTGTTCAGTTGAATCTTGGTCGATCAACCAACTACCGGAG >> 1314421
1564640 << *************************************************************************** << 1564566
1314422 >> ACCTCGCCATATCTCAAACCCCCAGCCTGCCAAACAGTCCCACACCACCAGCGCTACTTCGAGACACTGCCTAG >> 1314495
1564565 << **********************************************AC*C**T**************G****** << 1564492
Statistics
Matches: 1041 (99.24%), Mismatches: 8 (0.76%), Indels: 0 (0.00%)
ATpairs: 32.18%, CGpairs: 67.82%, GTpairs: 0.00%
:i = 1564601
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 2878963
highcenter: 2879011
testcenter: 2878987
im3: 96.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1564768 center: 3034042 interval size: 300 g: 3
Alignment explanation
Indices: 1468526--1469493,1564554--1565513 Loop: 95060 Score: 597
Left Length: 968 Right Length: 960 Average length: 964.0
3 most common centers (desc): 3034039 3034042 3034046
1468516 >> (LF) CGCCCTCACT
1565523 << (RF) TCATCCACAG
1468526 >> GAGTTCGGAGCCACTGGTTGATCACAGCGATGTGGATGGTGGCCTGGTACCGGACGGCGAGCTTGTCGTACCGGG >> 1468600
1565513 << ***C**TG*****A****G***CC*C*****G******TG***CT****C***CA******A**G*****C**** << 1565439
1468601 >> TGGCCACGGCACGATGTTGTTTGAGCTGGTTGATACCCCGTTCGACCGCATCGCGATCGCGATGGACAACCGGGT >> 1468675
1565438 << ****C*****C**C***********AG*******C**C*******AC*AC*A***C*CG**C*T**AGA*TG*** << 1565364
1468676 >> CGAACGCCGGAGGCCGACCGCCGCTCGCA-CCACGATTACGGCGATTGGCGGCCTGATCCGCTGGAACCGGGATC >> 1468749
1565363 << *******A**A**A**G*****-*C***CC********C*****C*CAG*A**A*****A*TG**C********* << 1565290
1468750 >> GTCGCCCGGATCCCATGCCTGCGCAGCCATGCCCGGTTCGCGCGAGTGGAATACGCTTTGTCGGCCAGTACTCGC >> 1468824
1565289 << **C**CC****T***G**AG******CA*C*AC*****C***CGG*T*********G*****G********G**C << 1565215
1468825 >> TGCGGCCGTACCCGCGCCCGCCCACCACCGAT-CTTGGCGACCTCGATTTCGTCGAGCACGGTCGTGAACTGTGG >> 1468898
1565214 << *G***T**G**C**A*****A****C***G*CC*CG**-****GC***CG*******C**AGGC*G******C** << 1565141
1468899 >> ACTATCAGCTGCTTGACCAGGCG-TGACCAGCAGCGACAACACTCGGCAGCCC-TGTTCACACGCCAGATGCAGC >> 1468971
1565140 << C**C***G*C********-****C***C*****T*******CCT**-***CACC*****C**C********C**A << 1565068
1468972 >> TTTGTCGTCCAGCCACCCCGCGACCGACCCAAACCATGATCAGCCGGCTCGAGCTGACCGTCGCCGCCCGGTGGC >> 1469046
1565067 << **C**AGG***A**C****A******G**C*CAC*C*****C*****A***A--**-*C**T******C*****A << 1564996
1469047 >> TCGGCCTGGGCGG-CACCGTCACGACGGGCTCCTGCGGCGTGTTGGTGGGCGCGTATGATCGTCGAGTCCACACT >> 1469120
1564995 << *********-***A*C*****C**C*****G**C********CCTT*****T**G********C********C** << 1564922
1469121 >> CACCTGCCAGCGGATCGATCCCGTCGCGTCGGCGAAGACCTGCAGCATTTTCAC-GATCAACCACC-ACACCCCG >> 1469193
1564921 << C***TA***A*G****AC***C*GC**********AGC****T**--**CG*C*T*GT**ACAC**G******** << 1564849
1469194 >> CCCCGCTGCCACCGCCTGAACAACCCATAGACCGCCGACCAGGACCCGTATTGCGGCGGCACGTCACGCCAGGGG >> 1469268
1564848 << C****CCA***C**C*C*****CAC*C****A****AC************G*****A**C*A***G*****G*** << 1564774
1469269 >> CAGCCGACCCGGGTCCGCCACCGGATCCCGTCGATGAGCTGCCGTTTGGTCCACATCGGCGGGCGGCCCGC-CTT >> 1469342
1564773 << ************T*******C***********G*CG**CG*C***GC******AG***TC********C*CA*C* << 1564699
1469343 >> CTTCGGTCGGGGCAGCAACGGCACCAACCGCGCCCACTGGGCATCGGTCAGGTCCGCTCGCCCGGCCACCGCTAC >> 1469417
1564699 << -*****CCA***C****C***AA***C***A*****A**********T***T*********C***A********C << 1564625
1469418 >> GCTGGTCACGAGGTCTCCGGCACTGATTCAGGTTTG-CTTGGTCGCTAACCCGAACTACCGGAGACCTCACCCAT >> 1469491
1564624 << TC******************---**-*****A*CTTA********T*G*T**-****************C**-** << 1564556
1469492 >> AT >> 1469493
1564555 << ** << 1564554
Statistics
Matches: 716 (73.29%), Mismatches: 235 (24.05%), Indels: 26 (2.66%)
ATpairs: 30.87%, CGpairs: 69.13%, GTpairs: 0.00%
:i = 1564768
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 3034018
highcenter: 3034066
testcenter: 3034042
im3: 78.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1628951 center: 3257459 interval size: 160 g: 2
Alignment explanation
Indices: 1628501--1628569,1628889--1628957 Loop: 319 Score: 42
Left Length: 69 Right Length: 69 Average length: 69.0
3 most common centers (desc): 3257459 3257460 3257458
1628491 >> (LF) CCGGATCGCG
1628967 << (RF) GCCCAGAGGG
1628501 >> CGGCTGGGCACCGTCGAGGAGGTCGTCGCGGCGATCC-GCACGCTCACCGTGCGCG-GCGCGC-CCGCCATC >> 1628569
1628957 << ****-*T******T-*AG***G***G*******CC**T**A***C********-**T*****CA**G***** << 1628889
Statistics
Matches: 54 (75.00%), Mismatches: 12 (16.67%), Indels: 6 (8.33%)
ATpairs: 12.96%, CGpairs: 87.04%, GTpairs: 0.00%
:i = 1628951
tupleindex: 2
intervalindex: 2
matches_in_interval: 118.0000
lowcenter: 3257441
highcenter: 3257477
testcenter: 3257459
im3: 24.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 1630774 center: 3180002 interval size: 300 g: 3
Alignment explanation
Indices: 1549225--1549339,1630670--1630778 Loop: 81330 Score: 49
Left Length: 115 Right Length: 109 Average length: 112.0
3 most common centers (desc): 3180005 3180002 3180003
1549215 >> (LF) GCTGAATGGT
1630788 << (RF) CGCCAAGCTG
1549225 >> CGT-GTGGTGGGCGGCGGTG-TGGTGGGTGGTGGTGTGTCGGGCGACCGCGTGGTGGGTGGTCGTGTGGTGGGCG >> 1549297
1630778 << ***G***********-****T**G*G*-******G*-*T**G*C*AC*-********AC**G**G**G****A** << 1630708
1549298 >> GCGGTGTGGTGGGTGGTGGTGTGTCGGGCGACCGCGTGGTCG >> 1549339
1630707 << T*G*C*******-***TG-**G-****AC***-****G**** << 1630670
Statistics
Matches: 84 (71.79%), Mismatches: 23 (19.66%), Indels: 10 (8.55%)
ATpairs: 23.81%, CGpairs: 76.19%, GTpairs: 0.00%
:i = 1630774
tupleindex: 3
intervalindex: 1
matches_in_interval: 178.0000
lowcenter: 3179978
highcenter: 3180026
testcenter: 3180002
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1747232 center: 3494074 interval size: 80 g: 2
Alignment explanation
Indices: 1746650--1746897,1747177--1747424 Loop: 279 Score: 256
Left Length: 248 Right Length: 248 Average length: 248.0
3 most common centers (desc): 3494074 0 0
1746640 >> (LF) GACCGATCAG
1747434 << (RF) CAGAGTCCGA
1746650 >> CCGATGACGGCGTTCATGATGGTGCCCGCGCTGGTGGCGACGGCACCGCCGATCATCGCTCCGGCCACCATCTTC >> 1746724
1747424 << *****G**G***********G**A*****************GT*C**T***********C**G************ << 1747350
1746725 >> GGGGACTCCAGGCCACCGCCGGTCCACTTCTCCCAGGCGAAGCGGCCGCCCGCGTAGATGATGGCGCAGATGCCC >> 1746799
1747349 << *******C**A*C*CAA***G*T***********************************G****GA*TC******C << 1747275
1746800 >> GCGAGCAGGACGAACCAGGTGAGGTAGCGGACGAGTTGCAGGATCTTGTCGGACACCGGTGGGGCCTCGGGCGTC >> 1746874
1747274 << *TG*****GC**********GCG******G****TG****A*********G****CC**G**G**A**G**T*** << 1747200
1746875 >> GGGTTACCGATCTGAGCCAGGGT >> 1746897
1747199 << **T**C****G***G****T*** << 1747177
Statistics
Matches: 200 (80.65%), Mismatches: 48 (19.35%), Indels: 0 (0.00%)
ATpairs: 33.00%, CGpairs: 67.00%, GTpairs: 0.00%
:i = 1747232
tupleindex: 2
intervalindex: 1
matches_in_interval: 29.0000
lowcenter: 3494062
highcenter: 3494086
testcenter: 3494074
im3: 13.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 1870952 center: 3407818 interval size: 300 g: 3
Alignment explanation
Indices: 1536825--1536918,1870897--1870996 Loop: 333978 Score: 46
Left Length: 94 Right Length: 100 Average length: 97.0
3 most common centers (desc): 3407818 3407821 3407820
1536815 >> (LF) ACCACCGCGC
1871006 << (RF) GCGGCGAAGT
1536825 >> AGAAGAACGACG-CGCTGCACGCCGCCGCCGACACC-CTGCTCG--CCGCCGCCGACACGGTGCTGGCCGCCAAC >> 1536895
1870996 << *****CG*****T***C**-**A***C*****TA**C*C**GT*TC*************G*G**CG*****CCG* << 1870923
1536896 >> GCCGAGGAC-ATCGCC-GC-CGCCGA >> 1536918
1870922 << *******G*C*C***CA**C****** << 1870897
Statistics
Matches: 73 (72.28%), Mismatches: 20 (19.80%), Indels: 8 (7.92%)
ATpairs: 13.70%, CGpairs: 86.30%, GTpairs: 0.00%
:i = 1870952
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 3407794
highcenter: 3407842
testcenter: 3407818
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1899486 center: 3678392 interval size: 300 g: 3
Alignment explanation
Indices: 1778906--1778934,1899458--1899486 Loop: 120523 Score: 43
Left Length: 29 Right Length: 29 Average length: 29.0
3 most common centers (desc): 3678392 0 0
1778896 >> (LF) GTGTTGCGGC
1899496 << (RF) TGGATAGCGT
1778906 >> GCGGCGGCGTGGCGGCGACCGCGCTGGCC >> 1778934
1899486 << *********CG****A************* << 1899458
Statistics
Matches: 26 (89.66%), Mismatches: 3 (10.34%), Indels: 0 (0.00%)
ATpairs: 7.69%, CGpairs: 92.31%, GTpairs: 0.00%
:i = 1899486
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 3678368
highcenter: 3678416
testcenter: 3678392
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1904780 center: 3808956 interval size: 160 g: 2
Alignment explanation
Indices: 1904176--1904242,1904713--1904780 Loop: 470 Score: 40
Left Length: 67 Right Length: 68 Average length: 67.5
3 most common centers (desc): 3808956 3808955 3808957
1904166 >> (LF) CACCGGATGC
1904790 << (RF) GCTCCGGCAC
1904176 >> GCGGCCGCGGCGA-GCAGGTCGGCGGCCCGT-GGCGCGGCCCCGGTCTCCACGCGGCGG-GCCAGCAGGC >> 1904242
1904780 << **********A*CG******-*-****C**CG********TAA******CG**A***G*A*C****C*** << 1904713
Statistics
Matches: 52 (74.29%), Mismatches: 13 (18.57%), Indels: 5 (7.14%)
ATpairs: 9.62%, CGpairs: 90.38%, GTpairs: 0.00%
:i = 1904780
tupleindex: 2
intervalindex: 2
matches_in_interval: 152.0000
lowcenter: 3808938
highcenter: 3808974
testcenter: 3808956
im3: 24.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 1915712 center: 3810451 interval size: 300 g: 3
Alignment explanation
Indices: 1894739--1894767,1915684--1915712 Loop: 20916 Score: 43
Left Length: 29 Right Length: 29 Average length: 29.0
3 most common centers (desc): 3810451 0 0
1894729 >> (LF) CCCGGTTGAA
1915722 << (RF) GGCACTCGGG
1894739 >> GTCGAGCACGACCGCGCCCTCGGCGTCGG >> 1894767
1915712 << **********GC************T**** << 1915684
Statistics
Matches: 26 (89.66%), Mismatches: 3 (10.34%), Indels: 0 (0.00%)
ATpairs: 19.23%, CGpairs: 80.77%, GTpairs: 0.00%
:i = 1915712
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 3810427
highcenter: 3810475
testcenter: 3810451
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1916888 center: 3791973 interval size: 300 g: 3
Alignment explanation
Indices: 1875082--1875170,1916803--1916891 Loop: 41632 Score: 47
Left Length: 89 Right Length: 89 Average length: 89.0
3 most common centers (desc): 3791973 3791974 3791972
1875072 >> (LF) CCGCCGAGTT
1916901 << (RF) GGAACGGGCG
1875082 >> CACCAGCACCGCGTCGCGGAC-CGCGCCCGCGGTACCGGCGAACACCGATCGCGCCACCCCGG-CGTTGACCTCG >> 1875154
1916891 << *****************G*GCC*******T**GG****-**CG*A*-*******C*CC*C***A**GG**A**** << 1916819
1875155 >> GCGTCGC-CGCCGCGCA >> 1875170
1916819 << -**GTG*A********* << 1916803
Statistics
Matches: 67 (72.83%), Mismatches: 19 (20.65%), Indels: 6 (6.52%)
ATpairs: 14.93%, CGpairs: 85.07%, GTpairs: 0.00%
:i = 1916888
tupleindex: 3
intervalindex: 1
matches_in_interval: 115.0000
lowcenter: 3791949
highcenter: 3791997
testcenter: 3791973
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1936115 center: 3806569 interval size: 300 g: 3
Alignment explanation
Indices: 1870453--1870756,1935811--1936116 Loop: 65054 Score: 164
Left Length: 304 Right Length: 306 Average length: 305.0
3 most common centers (desc): 3806569 3806568 3806570
1870443 >> (LF) CGCGACCGCG
1936126 << (RF) CCAGTCGGGG
1870453 >> ACCGGCACCCCGAAGGTGGAGGCGTGCAGCATCAGGCCGTTGCCCGCGTAGATACCCACATGGGAGATGTCCGGG >> 1870527
1936116 << ********C**G*G*GG*A******AC****G*A*****TTA**C********C*****C**G***CG*****G* << 1936042
1870528 >> TAGAAGAACACCACGTCGCCGGGTTGCAGATC-C-TCCTT-GGCGACCGGCGTGCCGTAGCTCG-CCTGC-GCGG >> 1870597
1936041 << *CG*C**A***************G-*-***C*C*C*C*TCG***-****G**G****-*G****C*****A**G- << 1935972
1870598 >> AGCTGGTGCGCGGCACATCCTTGCCGACCTGCTTGAACGCCCACTGCACCAGCCCGGAGCAGTCGAACTGGTGCG >> 1870672
1935971 << **C*G**********TC*C*TG***G******GC***************C**A***********GG*CCA***** << 1935897
1870673 >> GCCCGGTCGC-GCCCCACACGTACGGATCGCCGACGCGGGTGAGCCCGGCGGCCAGCGCACTG-GTGCCGC--TG >> 1870743
1935896 << *C***T-***G******AA****C**A*A***G**GA*****CA*C*G**G********C*G*T**G****CT** << 1935823
1870744 >> CCGGGGACCAGGC >> 1870756
1935822 << *A***G***-*** << 1935811
Statistics
Matches: 227 (72.52%), Mismatches: 70 (22.36%), Indels: 16 (5.11%)
ATpairs: 24.67%, CGpairs: 75.33%, GTpairs: 0.00%
:i = 1936115
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 3806545
highcenter: 3806593
testcenter: 3806569
im3: 81.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1949815 center: 3466428 interval size: 300 g: 3
Alignment explanation
Indices: 1516593--1516640,1949788--1949833 Loop: 433147 Score: 52
Left Length: 48 Right Length: 46 Average length: 47.0
3 most common centers (desc): 3466428 3466426 3466427
1516583 >> (LF) CGGTCGTGGC
1949843 << (RF) TCTTGCTACT
1516593 >> CGCGGCGAGCAGCAGAACGACACCGACACCGACACCGACGGCGAGGAC >> 1516640
1949833 << ***G****T*-*-**C***C*****************GC********* << 1949788
Statistics
Matches: 40 (83.33%), Mismatches: 6 (12.50%), Indels: 2 (4.17%)
ATpairs: 25.00%, CGpairs: 75.00%, GTpairs: 0.00%
:i = 1949815
tupleindex: 3
intervalindex: 1
matches_in_interval: 112.0000
lowcenter: 3466404
highcenter: 3466452
testcenter: 3466428
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 1996332 center: 3588518 interval size: 300 g: 3
Alignment explanation
Indices: 1592178--1592273,1996244--1996340 Loop: 403970 Score: 57
Left Length: 96 Right Length: 97 Average length: 96.5
3 most common centers (desc): 3588518 3588517 3588516
1592168 >> (LF) GCACCGCGAT
1996350 << (RF) ACGAGCAGCC
1592178 >> CGCGGCCACCGCGGCGGCGTTCTCC-TTC-GGTGCGGCGG-TGGGCACGTTCGCG-TGGTCGGTGCTGGTGGCGG >> 1592248
1996340 << ***G*T*********GA**C**CC*C***G********T*G**G***--*-****G**A***-*****G****** << 1996270
1592249 >> TCGTGGTCGGCGGTG-TGGTGG-GGTG >> 1592273
1996269 << *CG*******-****G****G*G**** << 1996244
Statistics
Matches: 77 (75.49%), Mismatches: 14 (13.73%), Indels: 11 (10.78%)
ATpairs: 25.97%, CGpairs: 74.03%, GTpairs: 0.00%
:i = 1996332
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 3588494
highcenter: 3588542
testcenter: 3588518
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2001520 center: 3897933 interval size: 300 g: 3
Alignment explanation
Indices: 1895943--1896542,2001391--2001996 Loop: 104848 Score: 208
Left Length: 600 Right Length: 606 Average length: 603.0
3 most common centers (desc): 3897933 3897939 3897940
1895933 >> (LF) GCCTCCTCGG
2002006 << (RF) CGGCGCCGGA
1895943 >> CGGTGTCGCCGAGGA-CGAAGGTGGCGGCCGGGAAG-ATCTTCAGGTGTTCGGGCTTGCGGCCGTATTTGGCCAG >> 1896015
2001996 << ********C***A**T**C-*G**TA*-*****G**C*******G***G*****C*G*******T*GCG*-*CC* << 2001925
1896016 >> CCT-GCCCTTGACGTCGGCGTAGAAGGCGCGGCCAGCGGCCAGGGTGCCG-TGCACGGTGAAGATGGCGTCGGCG >> 1896088
2001924 << ***A*C******A************G*AGA**C*CA*G*T***A-***A*C***C*************G****** << 2001851
1896090 >> --GCGGCCGCACCGAATTCGCGGCCCTCGTCGGAATCGCCCGCCTGCAACAGCACCGGATGGCCCTGCGGGCTCG >> 1896161
2001850 << AT******-*C*-***GC************A***CC**********C*G************G********--*C* << 2001780
1896162 >> GCG-GCAGCAC-GAACGGCGC-CGCGATGTCGAACTGGCT-GCCC-CGGTACCGGGTTTCGG-GGATCG-CGC-G >> 1896228
2001779 << ***G**C**CAA******AG*T***-*G*-**G*CCATA*G****A**TT*A**T-*C-**TA*****AA***G* << 2001709
1896229 >> CG-CGAAC-A-CG-CCCGCCGCGCGATCGACCACCAGCGCGTCGGCGGGCCAGCTGTCCCACAGCGC-ACGGCTG >> 1896298
2001708 << C*A**CGCA*C**C*********CAC**G*C**CC*AC******A*GAG******************C**GT*G* << 2001634
1896299 >> AGTTCGACGGCCTCGGCG-GCGCGCCGGTAGCGGTCGGCGTGCTCGAGATATCCGCCGCGGCGGAAGTTCTCGCC >> 1896372
2001633 << G**G*-***TTA**G-**A**G***CG***G*AA****A***C***C*C*CC*C*A*GT*A*G******CC*GC* << 2001561
1896373 >> GGTGAACGCGTCGGAGGAGGTGACAACGTTCCAGGCCGCCCGGCCGCCGGAGAGGTGGTCCAGCGAGGCGAACTG >> 1896447
2001560 << **GG**CA**CA*GG**A******C*A******GG*C**************************CGAG******T* << 2001486
1896448 >> TTTGGCCAGCTCGAAGGGCTCGTTGTAGGTGGAGTTGATG-GTTCCCGCCAAGCC-GAGCCGATCGGTGACCCCG >> 1896520
2001485 << GG*******T*A*A*********T********--*G**C*G*C*CC**TAG****G**A***C*A****C*CC*G << 2001413
1896521 >> GCCAGGGCGTTGAGCACGGTGA >> 1896542
2001412 << **C*A****C******CG**** << 2001391
Statistics
Matches: 430 (69.13%), Mismatches: 154 (24.76%), Indels: 38 (6.11%)
ATpairs: 27.21%, CGpairs: 72.79%, GTpairs: 0.00%
:i = 2001520
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 3897909
highcenter: 3897957
testcenter: 3897933
im3: 47.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2029585 center: 3781964 interval size: 300 g: 3
Alignment explanation
Indices: 1752209--1752567,2029397--2029753 Loop: 276829 Score: 189
Left Length: 359 Right Length: 357 Average length: 358.0
3 most common centers (desc): 3781964 3781963 3781965
1752199 >> (LF) GCCCCGATCC
2029763 << (RF) GACGTGCATC
1752209 >> GCCAGCGCCCGTCGTGCCGCACCGCGGTGCGGATGACGATGTTGAGGTCGGCGGTGCCGCCGA-GTCCGAGGAAG >> 1752282
2029753 << ****-****-***G*ACT***CC************C*****CG*CA*******AG***GC***T***-****A** << 2029682
1752283 >> CCGATGGTGCCGGAGTAGACCCCGCGCGGCGCGCCTTCCAGCTCGTCGATGATCTCCATCGTGCGCAGCTTCGGC >> 1752357
2029681 << **G*GGTG****GG******C******G*C*A*CC***C*A***G*****G*CA*******GG****G******* << 2029607
1752358 >> GCGCCGGTCATCGAGCC-GCCGGGGAAGCAGGCCCGCAC-GCAGTCGATGGCG-TCGACGTCCGGGCGC-AGG-G >> 1752427
2029606 << **T****TC*C**A***G******-**************G**-***G*C****T**--**C**G*****G**TG* << 2029536
1752428 >> TGCCGCGCACCGTCGAGACCAGCTGGTGGACG-GTC-GAATACGACTCCGTC-GCCATCAGCTCGGGTACGTGCA >> 1752499
2029535 << *G***T*-*****C********C**GTA****A*C*A*A*-***-***CT*CA***CCA*-*****AC***G*** << 2029465
1752500 >> CGCTGCCGATCTGGCAGACCCGCCCGAGGTCGTTGCG-CAGCAGGTCGACGATCATGAGGTTCTCGGCG >> 1752567
2029464 << *GC****GCC******G*****A**G**T********C*G*-**********C***G****C******* << 2029397
Statistics
Matches: 268 (72.63%), Mismatches: 79 (21.41%), Indels: 22 (5.96%)
ATpairs: 27.61%, CGpairs: 72.39%, GTpairs: 0.00%
:i = 2029585
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 3781940
highcenter: 3781988
testcenter: 3781964
im3: 50.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2160606 center: 4161395 interval size: 300 g: 3
Alignment explanation
Indices: 2000700--2000892,2160503--2160693 Loop: 159610 Score: 55
Left Length: 193 Right Length: 191 Average length: 192.0
3 most common centers (desc): 4161395 4161394 4161392
2000690 >> (LF) ACGTGATCCT
2160703 << (RF) CGGATGAAGC
2000700 >> CGGC-CTGTCCGGCGCCGATGCCGCCGCGCGCGGCCGG-GCGGCGCTGGCCGAGGTGGGCCTGGCCGGGCGCGAG >> 2000772
2160693 << ****C****T****GC***--****-**-**T**A**TG*T******GT***G***G******GC**T**T**GG << 2160623
2000773 >> CG-CGCCTGGCCGCGG-GAGCTCTCCGGTGGTGAGCAGCAACGGGTGGCGTTGGCCAGGTCGCTGGTC-CGCGAG >> 2000844
2160622 << *TA*T**-*-*C***TG***********G**TG**T**TGG**G*GGA*GG*****A*GC**A****CC*****- << 2160551
2000845 >> CCGGAACTGCTGCTGGCCGACGAGCCGTTCG-GCGCGCTGGACGCGTTG >> 2000892
2160550 << ************T*GGAC*********TG**A*C**-******G**C** << 2160503
Statistics
Matches: 136 (68.34%), Mismatches: 49 (24.62%), Indels: 14 (7.04%)
ATpairs: 18.38%, CGpairs: 81.62%, GTpairs: 0.00%
:i = 2160606
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 4161371
highcenter: 4161419
testcenter: 4161395
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2223630 center: 4447221 interval size: 40 g: 1
Alignment explanation
Indices: 2223591--2223610,2223611--2223630 Loop: 0 Score: 40
Left Length: 20 Right Length: 20 Average length: 20.0
3 most common centers (desc): 4447221 0 0
2223581 >> (LF) AAGTCGGTTC
2223640 << (RF) TTAGCCCTTA
2223591 >> GTCGATGCCGACCACCGTCG >> 2223610
2223630 << ******************** << 2223611
Statistics
Matches: 20 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 30.00%, CGpairs: 70.00%, GTpairs: 0.00%
:i = 2223630
tupleindex: 1
intervalindex: 2
matches_in_interval: 20.0000
lowcenter: 4447213
highcenter: 4447229
testcenter: 4447221
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 2276764 center: 4087024 interval size: 300 g: 3
Alignment explanation
Indices: 1810239--1810581,2276437--2276785 Loop: 465855 Score: 167
Left Length: 343 Right Length: 349 Average length: 346.0
3 most common centers (desc): 4087024 4087018 4087025
1810229 >> (LF) CGGTGGAGTT
2276795 << (RF) CGTTGATGCG
1810239 >> CAGCCACCACGAGGGCGCGCCCGGCCAGCAGGAGATCGACCTGCG-CTACGCCGACGCGCTGTCGATGGCCGACA >> 1810312
2276785 << ****C*********T***GTT*******AAG***GT-**T**A**T*************T**T*G*GG******G << 2276712
1810313 >> ACGTGATGACCTTCCGCTACCTCATCAAGGAGGTGGC-GATCGACGAG-GGCGTGCGGGCCACGTTCATGCCCAA >> 1810385
2276711 << C******G***CG*********CG*CAG**A*T*G**G**--**T*G*G***T****G*****A*********** << 2276639
1810386 >> GCCGTTCGCGGAGTGGCCGGGCTC-GGCGATGCACACCCACATGAGCCTGTTCGAGGGCGA-GACCAACGCC-TT >> 1810457
2276638 << *******T*G**GG*GT*G*****G***-******GAC******AGC****C-**TG****G*CC*G-***AC** << 2276567
1810458 >> CGCCGACCCGGACGAC--CCG-GACAAC--C-TGTCGGCGACGGCCCGCGCGTTCATCGCGGGCATCCTCGAGCA >> 1810526
2276566 << *G*******G*G****CC***A*CAGA*CC*T**********G***AT************************T** << 2276492
1810527 >> CGCCTCGGAGAT-CAGCGCGATCACCAACCAGTGGGTCAACTCCTACAAGCGGCTC >> 1810581
2276491 << *****CA*G*A*C***C***AC*A*CGC**-*TG***C**************G*** << 2276437
Statistics
Matches: 255 (71.63%), Mismatches: 81 (22.75%), Indels: 20 (5.62%)
ATpairs: 29.41%, CGpairs: 70.59%, GTpairs: 0.00%
:i = 2276764
tupleindex: 3
intervalindex: 1
matches_in_interval: 124.0000
lowcenter: 4087000
highcenter: 4087048
testcenter: 4087024
im3: 54.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2282512 center: 4564563 interval size: 160 g: 2
Alignment explanation
Indices: 2282051--2282088,2282475--2282512 Loop: 386 Score: 41
Left Length: 38 Right Length: 38 Average length: 38.0
3 most common centers (desc): 4564563 0 0
2282041 >> (LF) TTCCTCGGCT
2282522 << (RF) TGCTGGTGGC
2282051 >> CGGCGCAGTTGCTCGCCGCGCCCGCCGAACCGGCGTTG >> 2282088
2282512 << ******A*****G***C**GTC**********G***** << 2282475
Statistics
Matches: 31 (81.58%), Mismatches: 7 (18.42%), Indels: 0 (0.00%)
ATpairs: 19.35%, CGpairs: 80.65%, GTpairs: 0.00%
:i = 2282512
tupleindex: 2
intervalindex: 2
matches_in_interval: 97.0000
lowcenter: 4564545
highcenter: 4564581
testcenter: 4564563
im3: 26.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 2286880 center: 4253154 interval size: 300 g: 3
Alignment explanation
Indices: 1966193--1966649,2286505--2286961 Loop: 319855 Score: 105
Left Length: 457 Right Length: 457 Average length: 457.0
3 most common centers (desc): 4253154 4253153 4253155
1966183 >> (LF) CCGCGCCGAC
2286971 << (RF) GCGGCACCGC
1966193 >> GGCACCACCGCGAGGACGCCGATC-GCGGCCGCGGCCGAGAGGGCGGCCACCGCCCAGAACGCCGCCCGCCAGCC >> 1966266
2286961 << *******C*T*GCG**A*******T***GCT**TG**G-**A*****AC*AC**********A************ << 2286888
1966267 >> GAGCTGCTGGCCGATCACGGTGCCGG-CGGGCAGCCCGACGATGGTGGCGACGGTGAGCCCGCCCGCCACGATGC >> 1966340
2286887 << *A*A*G********CC*T*******TT****TG***-**CG*G*A*************C***CACTT**A**G*C << 2286814
1966341 >> TCATGGC-CCGCCCGCGCGCGGCGGCGGGC-ACCAGGTCCACGACGGTGGCGGCCG-AGAGC-GCCCA-GAAGCC >> 1966410
2286813 << G**GG**T***C**AAGAA**-***-****C******-*A-**-***G*T*GT***G*GG*TA***C*T***-*C << 2286745
1966411 >> CGC-GTAG-ACGAACGCGGCCACCACGCGGGTGCCGAACAGCACCGCGTAG-TCGGCGGTGAGCGCGCCGA-CGA >> 1966481
2286744 << ***G**C*G**-*CA**************AGG*C*G*A**A*CA*A*****C******G-******GCT**C**- << 2286673
1966482 >> CGTGGGCGGCCACGAAGATCGCGAGGAAGGCGAGCAGGGTGTCGCG--GCGCGGCAGCCGCAGTG-TGGCGACTG >> 1966553
2286672 << ***A*G**TCC*A***G*C*G****G*CGG*******--*TG***AAA************C-***C*****C*G* << 2286601
1966554 >> CAAGCACCG-GTGCGCCGACGAGCATGCCGAGCGCGAACGCCG-AGATGAGCAGGCCCGCCCGCGGAAT-GCCGA >> 1966625
2286600 << AC***-***T*G**T*****G*G**G**AG******A*-****C****G***GTA**C***-****GG*G*CA** << 2286529
1966626 >> TGGCGAGATCGGCGGACACCTCGG >> 1966649
2286528 << GGG***TC*******GC******* << 2286505
Statistics
Matches: 319 (67.30%), Mismatches: 121 (25.53%), Indels: 34 (7.17%)
ATpairs: 22.57%, CGpairs: 77.43%, GTpairs: 0.00%
:i = 2286880
tupleindex: 3
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 4253130
highcenter: 4253178
testcenter: 4253154
im3: 60.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2295532 center: 4425278 interval size: 300 g: 3
Alignment explanation
Indices: 2129663--2129779,2295499--2295616 Loop: 165719 Score: 81
Left Length: 117 Right Length: 118 Average length: 117.5
3 most common centers (desc): 4425278 4425277 4425276
2129653 >> (LF) GACCGGATTC
2295626 << (RF) AGCCACGCGA
2129663 >> GGCG-ATCGCTA-CCCGCACGAATTGTCGGGCGGGATGAAACAGCGGGTCGCG---ATCGCGCGCAGCCTCGCGT >> 2129732
2295616 << ****C****C**A****TA*-*C************GT*CGC************CAC***-*****G***C**-** << 2295545
2129733 >> TCGACCCCGAAGTGCTGCTGATGGACGAACCGTTCGCCGCGCTCGAC >> 2129779
2295544 << C**C*****CG-********G*G*****C******TT********** << 2295499
Statistics
Matches: 93 (76.23%), Mismatches: 20 (16.39%), Indels: 9 (7.38%)
ATpairs: 24.73%, CGpairs: 75.27%, GTpairs: 0.00%
:i = 2295532
tupleindex: 3
intervalindex: 1
matches_in_interval: 106.0000
lowcenter: 4425254
highcenter: 4425302
testcenter: 4425278
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2295534 center: 4296385 interval size: 300 g: 3
Alignment explanation
Indices: 2000851--2000889,2295496--2295534 Loop: 294606 Score: 48
Left Length: 39 Right Length: 39 Average length: 39.0
3 most common centers (desc): 4296385 0 0
2000841 >> (LF) CGAGCCGGAA
2295544 << (RF) CGCCGGGGCC
2000851 >> CTGCTGCTGGCCGACGAGCCGTTCGGCGCGCTGGACGCG >> 2000889
2295534 << *********GA*************TT******G***G** << 2295496
Statistics
Matches: 33 (84.62%), Mismatches: 6 (15.38%), Indels: 0 (0.00%)
ATpairs: 27.27%, CGpairs: 72.73%, GTpairs: 0.00%
:i = 2295534
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 4296361
highcenter: 4296409
testcenter: 4296385
im3: 50.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2341773 center: 4623733 interval size: 300 g: 3
Alignment explanation
Indices: 2281934--2282071,2341662--2341799 Loop: 59590 Score: 48
Left Length: 138 Right Length: 138 Average length: 138.0
3 most common centers (desc): 4623733 4623732 4623734
2281924 >> (LF) GCCATGATGA
2341809 << (RF) GACGACGTTG
2281934 >> CCTTCGGCGCGTTC-GCCGTGGTGGGCGTGCTGTGGATCCTGTTCGGCTACTCCGCCGTACTCGGCGACTC-GCT >> 2282006
2341799 << *********T****T***-**TGGAGC*********A*C*T*C*****TC****G***G-**TG*T**AG*A*** << 2341727
2282007 >> CGGCGGGCTCGGCC-TGCTCGGCGACCCGCTGGAGTTCCT-CGGCTCGGCGCAGTTGCTCGCCGCGC >> 2282071
2341726 << *****G-*C***TCC*********C*CA****GA******C*G**C*TG***GG*-*****C***** << 2341662
Statistics
Matches: 98 (69.01%), Mismatches: 36 (25.35%), Indels: 8 (5.63%)
ATpairs: 22.45%, CGpairs: 77.55%, GTpairs: 0.00%
:i = 2341773
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 4623709
highcenter: 4623757
testcenter: 4623733
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2461762 center: 4778021 interval size: 300 g: 3
Alignment explanation
Indices: 2314744--2316421,2461599--2463292 Loop: 145177 Score: 586
Left Length: 1678 Right Length: 1694 Average length: 1686.0
3 most common centers (desc): 4778036 4778021 4778022
2314734 >> (LF) GGGCACCGGA
2463302 << (RF) GTTCTTGCGC
2314744 >> CTGAACGGCATCGACCTGACGGTGGCGGCG-GGCACGGTGTGCGCGCTGCTCGGACCCAACGGCGCGGGCAAGAC >> 2314817
2463292 << ***C*****A**********G***-*****G**C**G***GT**CG********C**C***************** << 2463219
2314818 >> CACGGCGGTGCGCATCCTCGCGACGCTGCTGCGGCCCGACGCCGGGACCGCGCGGGTGGCCGGGTACGACGTAGT >> 2314892
2463218 << C*****************CA*G**T***T*G****A*****C***GGT***GTGG**G******GA******C*G << 2463144
2314893 >> ACG-CGATCCGGTGCGGGTCCGCGAGCGCATCGGGCTGGTCGGCCAGAACGCCGCGGTCGACGAGATCCTCTCGG >> 2314966
2463143 << G**A**C-****G**T***C****G*********G**GTG*******A****C************C*C**CT*** << 2463070
2314967 >> GGCGGCAGAACCTGGTGATGTTCGGCCGGCTCAACGGCCTCGGCCCGCGCGCG-GCCGCCCGGCGCGCCGCGGAG >> 2315040
2463069 << ***************T**********T****CAA*GT***C***C*G***-**A***GCC*T********TG*** << 2462996
2315041 >> TTGCTCGACCGCTTCGACCTCGCGGCGGCCGG-GAA-GCGGCCGGTCGGGGACTACTCCGGTGGCATGCGCCGCC >> 2315113
2462995 << G****C**C**A********C*A******C*GG**GG*****-*-****GT*C***TC***G********C***T << 2462923
2315114 >> GTCTCGACCTGGCTGCCGCGCTGATCGTCACTCCGCCGGTGCTGTTCGTCGACGAACCGACCACCGGGCTCGACC >> 2315188
2462922 << *C**C********G**CA**T*****G*CC*C***CTG*********G*C*****C***********G******* << 2462848
2315189 >> C-CGCTGC-GCGGCTGCAGGTGTGGGCGGCGGTGACCGAACTCGTCGCCGCGGGCACCACCGTGCTGCTGACCAC >> 2315261
2462847 << *C***T**G*****-*-*********T******GGC**GG**C*******TG********C********G***** << 2462775
2315262 >> CCAGTACCTGGAGGAGGCCGACCGGCTGGCCGACCACATCACGCTGCTCGACCAGGGACGGGTGATCGCCGCCGG >> 2315336
2462774 << *********G*********************AG**CC*****GC**T*****CGG**A**G*GG*******T**T << 2462700
2315337 >> GACACCCGCCGAGCTGAAGT-CGCGC-GT-CGG--ATCCGATTG-GGTGGAAACGACCTTCGACGACACGTCCG- >> 2315406
2462699 << G**G**C*T**C*******TT****CA*CC***GC***A***G*T*****A--**-**CG***-*A*-**-***T << 2462631
2315405 >> CC-GCCGA-GCACGCGGCCGAACTCGCCCGGCCCCTCGCGTGCGGCGAGGTGACCACCGAT-CCGGCCACC-CAT >> 2315475
2462630 << **A****AA*CAC***TTC*ACC*C******CACAC*T**C***TTGG**TG***GT***GC***TT*C**C*C* << 2462556
2315476 >> AC-CGTGCGCATCCCCGTCCTCGATCGC-GC-CG-AGGGTGTGCTCGCGCTGGCCGACGTGCTGCGCCGCGCCGA >> 2315546
2462555 << CAT**G**GCC**T***T**C**-****G**C*AG*GG*T*-*-****-*T**T*G-*-***T*-*T**T*C-*- << 2462490
2315547 >> CCTCGCCC-CGCGCGATCTCGACGTCCGCACCCCGTCGCTCGACGAGGTGTTCCTCCACCTGACCCG-----GCA >> 2315615
2462489 << *C*C***CA**T*-**GT***C*G*C****CC***TCA********G********C*********C*TGTGG*** << 2462416
2315616 >> C-G--GAA-AGGTTCCCGC---ATGACCAGCCTGGCCC-C-C-CGCACCTCCGGGATGATCGACGACATCCGCA- >> 2315681
2462415 << *G*GG*GGC***TCC****GAC*******GC**GT***C*A*C***C***T*A***G*G***G****AC*A*C*T << 2462341
2315680 >> CGATCACCCGCCGCAACCTGACGCACTG---G-GTCAATCGGCCCGCCACCGTGGTGGTCGGCTGGCTCTTCCCG >> 2315750
2462340 << **-*CCAC******CCC**G**G**A*TGGT*G*****G***ACTT*-*A**GG-***-*T***G*C*-****** << 2462271
2315751 >> GTCATGGTCA-TCCTGATGTTCGGCACAC-TCTTCGGCGGGGCGATCGAAACA-CCGGGGAATGGACGCTATTAC >> 2315822
2462270 << T**G**-**CC*C***G*G*T****A-**C*C******T*G*****-**GGCAC**G**GCCG**ACT***GGC* << 2462199
2315823 >> GAGTACCTGATGCCGGGCATGTTCGCGATGACCATGCTGTTCGGGCTGGAGTCGACCATGGCGGC-C-G-TCGCC >> 2315894
2462198 << **G*A********************A******C***CG******-**AG*-**G**-*GG***A*C*A*C***A* << 2462127
2315895 >> GCCGACGCCGCCAAGGGCGTCACCGACCGGTTCCGCTCCCTGCCGATGAGCAGCGC-CG-CGGTGGTCGCGGGCC >> 2315967
2462126 << GT****A*************C*A******G*****A***T********-**-**G*A**C*******CA*G**C* << 2462054
2315968 >> GGTGCGCCGCCGACCTGCTCAACACCGTGATCGC-GCTGGCCGTCGTGGTCGGCACCGGGCTCGCGGTCGGCTGG >> 2316041
2462053 << *GC***A*T****A***T**CACC*-***GC**CT****T**T**G**T*CTA*****G*A***A*T*C****** << 2461980
2316042 >> CAGTGGCATCA-CGGCCTCGGT-GACGCGCTCGCGGCGGTGGCATTGCTGCTCATGTTGCGGTTCGCCCTGCTCT >> 2316114
2461979 << *-*TGG*CT*CC***C**-*G*G*C****C*******GA*G**GG*******CAC*******T****C***T*** << 2461907
2316115 >> GGGTGGGCATCTACCTGGGACTCGTCGTCGCCGGGC-CGGAATCGGTGGCCGTCGTGCAGGTGCTGGTCTGGCCG >> 2316188
2461906 << ****G**CC*C*CC********CG*C**-****TT*C****CC***G**C*TT*G**AAG**GC*G*GA*AG*** << 2461833
2316189 >> CTGCTGTTCCTGTCCAACGCCTTCGTCGACACCGCGACG-ATGCCGCGCTGGCTCGG-CACGATCGCCGACTGGA >> 2316261
2461832 << A**TG*T*CT*G****C*TA********-*C**G*TC*AG*****GC**********A***-*****C*GC**** << 2461760
2316262 >> ATCCCTTGTCCGCCACCGCGTCGGCGGTCCGCGCG--CTGTGTGGCAATCCCGGGTGG-AGTGGCGCGTCGTGGA >> 2316333
2461759 << ****CT*G**C*****-*-*******GGT*G****TT****AG**C*G-*****AG**G**G**C*TA**G***C << 2461688
2316334 >> TCTCGGCGCACTCGGTGGCGGCGGCGGTGCTCTGGCCGCTGCTGATCACCGCGGTGTTCCTGCCCCTGGCGGTGC >> 2316408
2461687 << **CTTGT****C*****GA*TA*******C**************G*******************C********** << 2461613
2316409 >> GCCGATTCC-GCGC >> 2316421
2461612 << ****G****T**** << 2461599
Statistics
Matches: 1203 (69.18%), Mismatches: 430 (24.73%), Indels: 106 (6.10%)
ATpairs: 25.60%, CGpairs: 74.40%, GTpairs: 0.00%
:i = 2461762
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 4777997
highcenter: 4778045
testcenter: 4778021
im3: 61.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2468267 center: 4773634 interval size: 300 g: 3
Alignment explanation
Indices: 2304392--2305553,2468081--2469239 Loop: 162527 Score: 686
Left Length: 1162 Right Length: 1159 Average length: 1160.5
3 most common centers (desc): 4773631 4773628 4773634
2304382 >> (LF) GAGGAGCGGA
2469249 << (RF) CCCGGCGCGA
2304392 >> TCCCGCTCTACACCGCGGAATTCGTCGCCGACCCGCACCTGGCCTACCGCGAGATGCGCCGCCGGTACGGCTCGC >> 2304466
2469239 << *****T********G****C****G***C*********CCG******CG**************TAG**GGC**G* << 2469165
2304467 >> TGGCGCCGGTCGAGCTGGCCCCCGGCGTGCCGGCCACCCTGGTGATCGGCTACTCCACCGCGGTGCGAATCCTCA >> 2304541
2469164 << *G**A*****C***T*G**A***********G**C**C***********A***GCC***********C*****CG << 2469090
2304542 >> ACGACCCCAATCA-TTTCCCGGCCGATCCGCGCGCCTGGCAGAAGACCGTGCCGGAGAACTGTCCGGTGCTGCCG >> 2304615
2469089 << *******CC*C*CG*******-****G********C**********TC*****G*GGC****G***T*G****** << 2469016
2304616 >> ATGATGGCCTGGCTCCCCGCCGCCC-GCAACAACGACGGGCCCGTGCACGCGCGCTACCGCAGCGCGTCCGCGGC >> 2304689
2469015 << ***G***TC****CC**CTT*****A**CA-*C*TC***AAA**TG****A******A**CAGC***TT*TT*A* << 2468942
2304690 >> CGCCATCGACGCCATCGACGTCCAATCGATCTACCCGATGGTCGAGAAGATCGCCATCACCCTGATCAACACCTT >> 2304764
2468941 << C**C*****C*C*C****AG*C**GC*G**CG**C**C********GC******CC*CG*CA********CC*** << 2468867
2304765 >> CTGCCGGGCCGGGCAGGCCGACCTGGTGACCCAGTACGCCTTCCCGCTGGTGCTCGAGGTGCTCAACCAGATCGT >> 2304839
2468866 << ****CG**T*****CG*****A***G*G*C*******TAAGT**********A**TGG*G***C***TG***CG* << 2468792
2304840 >> CGGCTGCCCCGAGGACATCGGCCGCCGGGTCGCGGCGGGCATGGCCGCGCGCTTCGACACCGTCAAGAGTGCCCA >> 2304914
2468791 << A*****AA*C*GG**********TC*****C******************CAC*****CA***CCC**C*G***C* << 2468717
2304915 >> GGC-GATG-CC-GATGCTGAAAGAGGCACTGCTCGAACTCATCCGGCT-CAAACGAGAACACCCCGGCGACGACG >> 2304985
2468716 << T**G*C*TT**T*******GAG*****C********C****-******T*GCC**C*GC*******TC******T << 2468643
2304986 >> TCACCTCGCGGCTGGTCCAGCACCCGGCCCAGCTCGAC-GACGTGGAGGTCTTCGCCCAGCTGATGAGCTTCTAC >> 2305059
2468642 << *******G*********TGG***CT*T*CCC***-***G****T****T*CT**GT*******C*G*G*G***** << 2468569
2305060 >> GGTGCGGGCTTCGAAGCGCAGCGCAACCTCATCACCAACGCGCTGCTGCTGATGATCACCGACGACCGGTTCCGC >> 2305134
2468568 << **G*****AT****CG**C**CAC*********C*****T**C***********G*****************-** << 2468495
2305135 >> TTCGGCGACGTGCTC-AC--CAACCTGTCCACCATCGATGCCCTCGACGAAGTGCTCTTCGACGACCCGCCGATG >> 2305206
2468495 << --****TC*******C**CC**CC**GTTC***GC***G**C*****A**C*********TG************* << 2468422
2305207 >> GCCAACTTCTGCACCACCTACCCGCGCCAGCCGATCACCGTCGACGGCGTCTGGCTACCGGCCGACCAGCCCGTC >> 2305281
2468421 << **C****T****CAC*C******************CGAC**C*****C**C*****C**G***T**C****C**C << 2468347
2305282 >> GTCATCAGCCTGGCCGCCTGTAACAACGACCCCGAGATCCGCGGCGCCGACACCCCCGGCGGCAGCAGCCACGGC >> 2305356
2468346 << G*C******T**A*C*****G********A**C*G*C**TTA--*-***CACC*C***T**-*-**AG**C*A-* << 2468278
2305357 >> AACCGCTCCCACCTGGCGTGGAGCACCGGCCCGCACGCCTGCCCCGCCCGCTCCGTCGCCTATGTCACCGTCCAG >> 2305431
2468277 << ***T*A***********G******C*C*********TC***********T*GTC*****CTGGG*C*A**G**** << 2468203
2305432 >> AACGCCATCGACCAACTCTTCGACGCCCTCCCCGAAATCCAGCTCGCCGT-CCCCGCCGAGGACCTCCGCCGGCG >> 2305505
2468202 << C*************C***G*******C********C***C****C*****C******-***G*CA*CTG*A**** << 2468129
2305506 >> CCCCGGCCCCTTCCACCGCGCCCTCGCCGCCCTGCCCGTCGTCTTCCC >> 2305553
2468128 << *********C**************C*TTA*C**T**C***TG****** << 2468081
Statistics
Matches: 851 (72.55%), Mismatches: 297 (25.32%), Indels: 25 (2.13%)
ATpairs: 29.49%, CGpairs: 70.51%, GTpairs: 0.00%
:i = 2468267
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 4773610
highcenter: 4773658
testcenter: 4773634
im3: 82.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2486730 center: 4972660 interval size: 80 g: 2
Alignment explanation
Indices: 2485924--2485970,2486687--2486735 Loop: 716 Score: 45
Left Length: 47 Right Length: 49 Average length: 48.0
3 most common centers (desc): 4972660 4972659 4972658
2485914 >> (LF) CGACCCGGAT
2486745 << (RF) CCGGTCGTCG
2485924 >> GCGCTCGGTCGCGGCGGCGACGGCG-GCGGCGAGCAC--CGTCGG-CGCCG >> 2485970
2486735 << ****-**************G***A*G*****-*****TA**G***A***** << 2486687
Statistics
Matches: 42 (82.35%), Mismatches: 3 (5.88%), Indels: 6 (11.76%)
ATpairs: 7.14%, CGpairs: 92.86%, GTpairs: 0.00%
:i = 2486730
tupleindex: 2
intervalindex: 1
matches_in_interval: 69.0000
lowcenter: 4972648
highcenter: 4972672
testcenter: 4972660
im3: 18.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 2486834 center: 4932202 interval size: 300 g: 3
Alignment explanation
Indices: 2445366--2445403,2486800--2486836 Loop: 41396 Score: 44
Left Length: 38 Right Length: 37 Average length: 37.5
3 most common centers (desc): 4932202 4932203 0
2445356 >> (LF) CGATCGACCA
2486846 << (RF) GCCACGCGCG
2445366 >> GGGCCCGGCGGTCGGCGTCGGCGGTGACGTCGCAGCGC >> 2445403
2486836 << **********GT************G*-**C****G*** << 2486800
Statistics
Matches: 32 (84.21%), Mismatches: 5 (13.16%), Indels: 1 (2.63%)
ATpairs: 6.25%, CGpairs: 93.75%, GTpairs: 0.00%
:i = 2486834
tupleindex: 3
intervalindex: 1
matches_in_interval: 104.0000
lowcenter: 4932178
highcenter: 4932226
testcenter: 4932202
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2532755 center: 4966294 interval size: 300 g: 3
Alignment explanation
Indices: 2433538--2433624,2532670--2532756 Loop: 99045 Score: 44
Left Length: 87 Right Length: 87 Average length: 87.0
3 most common centers (desc): 4966294 4966292 4966291
2433528 >> (LF) GCGATGAAGG
2532766 << (RF) CGCCGCTGGG
2433538 >> GGCGCGCCATCCCGACCAGGTCGGCGCCGGCGGCGAG--GGCGGCG-GTGAGGTCGG-CG-CGGTCACGGAAGGC >> 2433607
2532756 << ********GC****C****GC**G**T*********GGT****-**T**GG**G***A**A***C*C**-***G* << 2532684
2433608 >> CTGCGAGACGAGCAGCG >> 2433624
2532683 << *-*-*-*********** << 2532670
Statistics
Matches: 68 (73.91%), Mismatches: 14 (15.22%), Indels: 10 (10.87%)
ATpairs: 11.76%, CGpairs: 88.24%, GTpairs: 0.00%
:i = 2532755
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 4966270
highcenter: 4966318
testcenter: 4966294
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2555159 center: 5109598 interval size: 160 g: 2
Alignment explanation
Indices: 2554433--2554473,2555125--2555165 Loop: 651 Score: 47
Left Length: 41 Right Length: 41 Average length: 41.0
3 most common centers (desc): 5109598 0 0
2554423 >> (LF) TGCTGCGTTC
2555175 << (RF) GGATGGACGC
2554433 >> CGGCGCCGCCGCCCGCGCGGTCGTCACCCCCGACGCCGCCG >> 2554473
2555165 << ****GT*****T*****A*G********CC*********** << 2555125
Statistics
Matches: 34 (82.93%), Mismatches: 7 (17.07%), Indels: 0 (0.00%)
ATpairs: 11.76%, CGpairs: 88.24%, GTpairs: 0.00%
:i = 2555159
tupleindex: 2
intervalindex: 2
matches_in_interval: 108.0000
lowcenter: 5109580
highcenter: 5109616
testcenter: 5109598
im3: 34.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 2571589 center: 4827410 interval size: 300 g: 3
Alignment explanation
Indices: 2255482--2255843,2571567--2571928 Loop: 315723 Score: 232
Left Length: 362 Right Length: 362 Average length: 362.0
3 most common centers (desc): 4827410 4827411 4827409
2255472 >> (LF) GGGGTCCAGC
2571938 << (RF) GCCTAGCCAC
2255482 >> CTCGCCGGTACCGCCGTGGAGTGGTACGACTTCTTCCTCTACGGCACCGCCGCCGCGCTGGTGTTCAACAAGCT- >> 2255557
2571928 << ****A***G***T**T*G***************GTCT********C*CA*******GC********C-*CGG**A << 2571855
2255556 >> GTTCTTC-CCGTCGGAGGATCCGCTGGTCGGC-ACCATGCTGGCGTTCGCGACCTACGCCGTGGGGTTCGTCGCG >> 2255628
2571854 << *******A***C**AG*-*C**-****GA***G*****G***A*******G****A***C*****A*****C**G << 2571782
2255629 >> CGGCCACTCGGCGCCGCCGTGCTCGGCCACTTCGGCGACGTCAAGGGCAGGCGCGCC-ACGCTGATCGCGAGC-C >> 2255701
2571781 << *****C*******C*TA***GT*C**T**A*****A***GCC*AG***G*-*TT*TTC*A****C*C*A*-**C* << 2571709
2255702 >> TGCTGCTGATGGGCGTGTCGACCTTCCTCATCGCGCTGCTGCCCACCTACGCCGCC-ATCGGCGTCACCGCGCCG >> 2255775
2571708 << ***************GGC*G******CGCC***CG*************G*-*T**TC******T*CACC****** << 2571635
2255776 >> CTGCTGCTGGTGCTGTTGCGGCTGGTGCAGGGCTTCGCGCTCGGCGGCGAGTGGGGCGGTGCGGTGCT >> 2255843
2571634 << C**A********C**G********T*G*****T****C*C*******************G******** << 2571567
Statistics
Matches: 272 (73.91%), Mismatches: 84 (22.83%), Indels: 12 (3.26%)
ATpairs: 29.04%, CGpairs: 70.96%, GTpairs: 0.00%
:i = 2571589
tupleindex: 3
intervalindex: 1
matches_in_interval: 117.0000
lowcenter: 4827386
highcenter: 4827434
testcenter: 4827410
im3: 29.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2600723 center: 5096692 interval size: 300 g: 3
Alignment explanation
Indices: 2495813--2496065,2600627--2600879 Loop: 104561 Score: 116
Left Length: 253 Right Length: 253 Average length: 253.0
3 most common centers (desc): 5096692 5096691 5096693
2495803 >> (LF) CGTCGGGATG
2600889 << (RF) GCACGTCCAG
2495813 >> GTGGGTCGCCTGCACGATCGTCGCGCCGTCGGCGGCCAGTTCGACG-AGCAG-GTCGGCGATGATC-CGGCGCGA >> 2495884
2600879 << ******C*T*TG********G******G***G*******G***-**G*****G**-**A***GCG*C*AA*-*** << 2600808
2495885 >> GTGCGCGTCGAGGCCGACGGTGGGTTCGTCGAGCAGCAGGATG-TCGGCCCGCTGGGCCATCGCCTGGGCGAGCA >> 2495958
2600807 << *G**AA***G*GG***C**TTG**G*****G********G*C*C***G*A*-********C****G*A**G*GC* << 2600734
2495959 >> GGGTGCGCTGGCGCTGGCCGCCGGAGAGGGTGTCGAGGCGGCGCCCGGTCAGCTCGGTGAGGTCCAGCCGGTCCA >> 2496033
2600733 << TG*G*****A******************GG**G***AGA*G**CA***G*********G**G**C*G***GC*C* << 2600659
2496034 >> GGCAGGCG-TCGACGATCGCGGTGTCGGCGCGG >> 2496065
2600658 << *-*CG***C**G***CG*A*GGC********** << 2600627
Statistics
Matches: 182 (70.54%), Mismatches: 66 (25.58%), Indels: 10 (3.88%)
ATpairs: 23.63%, CGpairs: 76.37%, GTpairs: 0.00%
:i = 2600723
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 5096668
highcenter: 5096716
testcenter: 5096692
im3: 37.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2606868 center: 5207579 interval size: 300 g: 3
Alignment explanation
Indices: 2600706--2600802,2606777--2606873 Loop: 5974 Score: 61
Left Length: 97 Right Length: 97 Average length: 97.0
3 most common centers (desc): 5207579 5207577 5207581
2600696 >> (LF) GATCGGCAGG
2606883 << (RF) CGGCGCGCTG
2600706 >> CTCTCCGGCGGCCAGCGCAAGCGCGCGTTC-G-TGGCACGGGCGCTGGCC-CAG-GAGGCGACCCTGCTGCTGCT >> 2600776
2606873 << **C*********TA****G****-*-**G*T*G*G**G**G*********C*G*G*GG***GC**--******T* << 2606803
2600777 >> GGACGAGCCGTTCGCCGGGGTGGACA >> 2600802
2606802 << **************C**G*G****** << 2606777
Statistics
Matches: 76 (75.25%), Mismatches: 17 (16.83%), Indels: 8 (7.92%)
ATpairs: 21.05%, CGpairs: 78.95%, GTpairs: 0.00%
:i = 2606868
tupleindex: 3
intervalindex: 1
matches_in_interval: 105.0000
lowcenter: 5207555
highcenter: 5207603
testcenter: 5207579
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2607019 center: 4736557 interval size: 300 g: 3
Alignment explanation
Indices: 2129376--2129904,2606653--2607181 Loop: 476748 Score: 205
Left Length: 529 Right Length: 529 Average length: 529.0
3 most common centers (desc): 4736557 4736556 4736558
2129366 >> (LF) GAGGTGCGGG
2607191 << (RF) TGGCAGCGCG
2129376 >> CGGGGGAGTTCCTCGTCCTGGTCGGGCCGAGTGGG-TCCGGGAAGTCCACGCTGCTG-GATCTGCTCGGCGGATT >> 2129448
2607181 << ****G***T****C***C*******-*TT*AGG**G*C***G*******CG******G*GC*-***C*G***CG* << 2607109
2129449 >> GAGCACACCGACCGCCGGGAAGATCCT-GCTCGACGACGAACCCGTCACCGGTCCGG-GGCTGGACCGCGGGATC >> 2129521
2607108 << *G*CG*C***CTC******CG*C*C*CG**-*****C***C*A*********C***AG***G*-****C*G*G*C << 2607036
2129522 >> GTCTTCCAGCAGTACGCGCTGCTGCCGTGGCGGACCGCACGGGCG-AACATCGAATTCGGGCTGGAGGCCAAG-G >> 2129594
2607035 << **C******C*GC*******************G**C**C***-**G*********G*C*G****G-***ACG*G* << 2606963
2129595 >> GTGTGCGGCGCCGGGAGCGCAGGCAGATCGCCGACCGGTATCTGGACCTGGTGGGACTGACCGGATTCGGCGA-T >> 2129668
2606962 << *G**G*GG**T*GG**T***G*GC**G*****AAC**GTCC**G***CT***G**G**G*****G*T**G***G* << 2606888
2129669 >> CGCTACCCGCACGAATTGTCGGGCGGGATGAAACAGCGGGTCGCGATCGCGCGCAGC-CTCGCGTTCGACCC-CG >> 2129741
2606887 << TG**C**-**C***GG****G*****G***GCG*********GT*G****G***-**C**C**GCG**GC**C** << 2606815
2129742 >> AAGTGCTGCTGATGGACGAACCGTTCGCCGCGCTCGACGCCCAGACCAGGGAGTCGC-TGCAGGACGAACTGCT- >> 2129816
2606814 << G-*GG**************C*******C******C***T************G*C-**T****--****-*****G << 2606745
2129815 >> G-CG-CATCTGGCGCGCC-ACCGGCAAGACCATCCTGTTCATCACCCACGGCATCGACGAAGCGGTGTACCTGGG >> 2129886
2606744 << *A**T**G******C***G*A*G-**GG***C**C*G***C*********T*G*******C***G**GC***G** << 2606671
2129887 >> ACAGCGGGTGGCGGTCCT >> 2129904
2606670 << AC*G***T*G**G**C** << 2606653
Statistics
Matches: 378 (69.61%), Mismatches: 137 (25.23%), Indels: 28 (5.16%)
ATpairs: 27.25%, CGpairs: 72.75%, GTpairs: 0.00%
:i = 2607019
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 4736533
highcenter: 4736581
testcenter: 4736557
im3: 67.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2654372 center: 4814897 interval size: 300 g: 3
Alignment explanation
Indices: 2160521--2160669,2654226--2654376 Loop: 493556 Score: 64
Left Length: 149 Right Length: 151 Average length: 150.0
3 most common centers (desc): 4814897 4814894 4814895
2160511 >> (LF) CCAGGCCCAC
2654386 << (RF) GCTCCACCAA
2160521 >> GGTCGGCTCGTCCAGGATCAGCAGTTCCGGTCGCGCCACCAACGCGCAGGCCAGGGAGGCGCGGGTCTTCTGTCC >> 2160595
2654376 << **************TG*C***C*AG*****CCTC**CC***C*TC*********A*GGTTG****G*GC**GG** << 2654302
2160596 >> GCCGGAGAGCTC-GTC-GCCG-CGGTGATGGGCGTGCTCGCGCAGGCCGACCGCGGTG-AGCGCCTCGTCGACCT >> 2160666
2654301 << **********C*G***T**C*C****GCG**A**T*C*CA*G********C*G**-**G*******C*******- << 2654229
2160667 >> CGG >> 2160669
2654228 << *** << 2654226
Statistics
Matches: 107 (69.93%), Mismatches: 40 (26.14%), Indels: 6 (3.92%)
ATpairs: 22.43%, CGpairs: 77.57%, GTpairs: 0.00%
:i = 2654372
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 4814873
highcenter: 4814921
testcenter: 4814897
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2664751 center: 5292873 interval size: 300 g: 3
Alignment explanation
Indices: 2628110--2628359,2664511--2664763 Loop: 36151 Score: 98
Left Length: 250 Right Length: 253 Average length: 251.5
3 most common centers (desc): 5292873 5292870 5292871
2628100 >> (LF) ATAGCCGGGC
2664773 << (RF) GAGTGCCTGT
2628110 >> AGGTCGCCGTCGTCACCGGCGCGGGCCGCGGCCTGGGCCGCGCC-ATCGCCGTGGCCTTCGCCGAGGCGGGCGCC >> 2628183
2664763 << ******A*G*C********T*CGT*A********G***TT-**TC**C*ACG************G*********C << 2664690
2628184 >> GACGTGCTGATCGCG-GCGCGCACCAAGCAACAACT-CGACGAGGTGGCCGAGCAGAT-CACG-GCCGC--GGGC >> 2628252
2664689 << ******C*******GT**-****TCAA-*C**CC**C**G**G*G***********C*C*C**T**T**TG**** << 2664617
2628253 >> AGGCAGGCGCACGTCGTTGCGGCCGACCTGAGCGACCCCGAG-ACCGCTGCCGGGCTCGCCGAGGCGGCCGTGCA >> 2628326
2664617 << -***CG****A*GGC**G******T**C*G******ACC*G*G*CA**-*T**G***C********G***-*T*C << 2664545
2628327 >> GCG-GTTCGGCAGGCTCGACATCGTGGTCAACAA >> 2628359
2664544 << G**T*******G**C*C***C*CG****C***** << 2664511
Statistics
Matches: 181 (69.88%), Mismatches: 63 (24.32%), Indels: 15 (5.79%)
ATpairs: 23.76%, CGpairs: 76.24%, GTpairs: 0.00%
:i = 2664751
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 5292849
highcenter: 5292897
testcenter: 5292873
im3: 54.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2680554 center: 5360859 interval size: 80 g: 2
Alignment explanation
Indices: 2680305--2680361,2680497--2680554 Loop: 135 Score: 40
Left Length: 57 Right Length: 58 Average length: 57.5
3 most common centers (desc): 5360858 5360859 5360857
2680295 >> (LF) GCACCGCCGC
2680564 << (RF) CTGCGGCCCC
2680305 >> CGCGGCCCGCTGCTGCGC-CACGG-CCGCCACCGCGAACAGCAGTGCCGCCG-CCAGCGC >> 2680361
2680554 << *********CT*C*-***C*****A***A****G**G***G*C*******A*C***-*** << 2680497
Statistics
Matches: 46 (76.67%), Mismatches: 9 (15.00%), Indels: 5 (8.33%)
ATpairs: 15.22%, CGpairs: 84.78%, GTpairs: 0.00%
:i = 2680554
tupleindex: 2
intervalindex: 1
matches_in_interval: 36.0000
lowcenter: 5360847
highcenter: 5360871
testcenter: 5360859
im3: 14.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 2684262 center: 5284950 interval size: 300 g: 3
Alignment explanation
Indices: 2600677--2600786,2684164--2684273 Loop: 83377 Score: 93
Left Length: 110 Right Length: 110 Average length: 110.0
3 most common centers (desc): 5284950 5284949 0
2600667 >> (LF) GTCGAGCTGA
2684283 << (RF) TGGCCGTAGC
2600677 >> CCGAGCTGGCCGACCGGCAGATCGGCAGGCTCTCCGGCGGCCAGCGCAAGCGCGCGTTCGTGGCACGGGCGCTGG >> 2600751
2684273 << ****G*************G*G*C*T*CT***C***************G*******G*CCT*GA*GTA******** << 2684199
2600752 >> CCCAGGAGGC-GACCCTGCTGCTGCTGGACGAGCCG >> 2600786
2684198 << ******CGT*G***T-*G****************** << 2684164
Statistics
Matches: 86 (77.48%), Mismatches: 23 (20.72%), Indels: 2 (1.80%)
ATpairs: 22.09%, CGpairs: 77.91%, GTpairs: 0.00%
:i = 2684262
tupleindex: 3
intervalindex: 1
matches_in_interval: 107.0000
lowcenter: 5284926
highcenter: 5284974
testcenter: 5284950
im3: 61.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2719241 center: 5416046 interval size: 300 g: 3
Alignment explanation
Indices: 2696385--2696886,2719160--2719661 Loop: 22273 Score: 321
Left Length: 502 Right Length: 502 Average length: 502.0
3 most common centers (desc): 5416046 5416045 5416043
2696375 >> (LF) CTGCTGGTGT
2719671 << (RF) GACCACATGC
2696385 >> CGATGGACGTCTCGGTGCTGTTCCTCGCGCTGCCGACGCTCACCACCGACCTGGATCCGTCGGCCACTCAACAGC >> 2696459
2719661 << ********G*CT********GT***C**GC******A*T***C*C****A***G*G***T*G*C*A*C****A** << 2719587
2696460 >> TCTGGATCCTCGACATCTACGGCTTCCTGATCGCCGGCCTGCTCATCACGATGGGCAATCTCGGCGACCGGATCG >> 2696534
2719586 << *C******T*************C***T**C*******C*****C*****GCG*****GC************G*C* << 2719512
2696535 >> GCCGCCGCAACATTCTGCTGG-CGGGCGCCGCGGTCTTCGGTGTCGGT-TCGGTGCTGGCCGCCTTCGCACCCAG >> 2696607
2719511 << **T*C**CGCC**C******AA****-**C***G*C***T*GG*-***G***T*GC*************G***** << 2719439
2696608 >> CGCCGCCGTGCTGATCGCC-GCTCGCGCCCTGATGGGCATCGGCGGTGCGACGTTGCTGCCGTCGAGCCTGGCGC >> 2696681
2719438 << ***C*TCT*G******GACA**-*****C***G*G*******G**********C**CG***G****GC***A*** << 2719365
2696682 >> TGATCTCC-ACGCTGTTCGCCGA-CGCGCGCGAGCGTGCCGCCG-CCATCGGCGTGTGGAC-GGCG--TTCTTCG >> 2696750
2719364 << ******A*C**T-**********A**-***CG****-*A*T*A*C**C*C**C**G***CAA****GC****G*T << 2719293
2696751 >> CGGGCGGGTCGGCGGTCGGCCCGATCATCGGCGGGCTGCTGCTGCACCATTTCTGGTGGGGTTCGGTGTTCCTCA >> 2696825
2719292 << *G*****--**-****C**C******C*******GC*******GC*T**G***********T***********CG << 2719221
2696826 >> TCAACGCCCCGGTGCTGCTGGTGTTGCTCGTGCTCGGCCCGCTGGTGCTGCCCGAGCACCG >> 2696886
2719220 << **CGC*A*******T**CC*A**G****C************T*****A*T**C***A**** << 2719160
Statistics
Matches: 378 (73.97%), Mismatches: 115 (22.50%), Indels: 18 (3.52%)
ATpairs: 30.42%, CGpairs: 69.58%, GTpairs: 0.00%
:i = 2719241
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 5416022
highcenter: 5416070
testcenter: 5416046
im3: 54.0000
frequent_center_ratio*rnkp: 25.9200
Done.