Inverted Repeats Finder Program written by:
Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 3.05
Sequence: NFA 2003-09-04
Parameters: 2 3 5 80 10 40 100000 500000 -t7 600000 -d
Length: 6021225
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15, N:0.00
File 2 of 3
Found at i: 2725075 center: 5074179 interval size: 300 g: 3
Alignment explanation
Indices: 2348159--2349293,2724886--2726023 Loop: 375592 Score: 591
Left Length: 1135 Right Length: 1138 Average length: 1136.5
3 most common centers (desc): 5074182 5074179 5074176
2348149 >> (LF) CGGGACAAGA
2726033 << (RF) CGGACGCGCG
2348159 >> GGTGGCGTCAGAGCGTGCGGGCGATGATCTCCTTCATGATCTCGTTGGTGCCCGCGTAGATCTTCTGGACCCGGT >> 2348233
2726023 << **C***G******A*TG*****T****CT********G*G*******G********TC***CGC*T*G**C***C << 2725949
2348234 >> GGTCGACCCAGGCGC-GCGAGATCGGGTACTCGGTCATGTAGCCGTAGCCGCCGTGCAGTTGCAGGCATTCGTCC >> 2348307
2725948 << GTG**CACA*GT-**A*C********T*****G********G************TT***G**A*****TGC**** << 2725875
2348308 >> AGCGCGACCATGGTGC-GCTCGGTGATCCACCACTTCGCCATCGCGACGGTGGGCACGTCGAGTTCGCCGCGGAT >> 2348381
2725874 << *G*T**-**CGG*T**A*C***********CA****C*A******GC*******C*A*********G*****G*C << 2725801
2348382 >> GTGCTTGGTGAT-GCAGTCGTCGAGGAAGACGCGGGCGATCCGGGTCTCGGTGGCGACCT-CGGCGAGGGTGAAC >> 2348454
2725800 << *******TG***G**-*************CA***G**G*G**A**GCTA******-**T*A****G**AAG**** << 2725728
2348455 >> TTGGTGTTCTGGAAGGCGAACAGCGGCTTGCCGAACGCCTGGCGCTCCTTGCTGTAGGAGATCGTCTGCGCCAG- >> 2348530
2725727 << **G********G*A****A*********************G***CG*****C****GAG**-**C-**T**AC*T << 2725655
2348529 >> CGCGGTT-TCCATCG-CGACCACCGAGCCGACCAGGATGATCAGCCGTTCCTGGGGGAGTTGCTGCATCAGCTGG >> 2348601
2725654 << **CGG**G******TA**C*-****G*TAG***CG*C***G***C**G*****G*GG**GT*********A**** << 2725581
2348602 >> ACGAAGCCCTGGCCCTCGGACTCGCCGAGCAGGTTGCCCACCGGCACGCGCACGTCGTCGAAGAACAGTTCCGAG >> 2348676
2725580 << AT*****************G*****************A*C*C*****G****C*G*************G**C*G* << 2725506
2348677 >> GTGTCCTGGCCCC-GCTGGCCGATCTTGTCCAACCGGCGACCGCGGCGGAAGCC-GGGGCG--GTCG--GTCTCC >> 2348745
2725505 << ************AA**G*-*********GA**CCTA***C******CA******G****A*AG****GG*T*GA* << 2725432
2348746 >> ATC-AAGATCAAGGAGGTGCCCGCGGCGCCGTCGGCGATCGCGCCGGTCTTGGCGACCACGATCAC-CAGATCGG >> 2348818
2725431 << CC*C*******CG***TGG***********G*A**---***C*A***********C*C*A***C*AC*G*-***G << 2725361
2348819 >> CCTGCCCGCCGTTGGTGATGAACGTCTTGGCGCCGTTGATCACGTAGTCGTCGCCCTCGCGCACCGCGCGGGTGC >> 2348893
2725360 << T*T***T***************CT****G*T****C****C*****G*****T*****G********G*A***GA << 2725286
2348894 >> GGATCGCCTGCAGATCCGATCCGGTGCCGGGCTCGGTCATCGCC-AGCGCGCCGACCACCTCCCCGGAGCACAGG >> 2348967
2725285 << A***CAA******C*****C********G**A********-***C*AC*T*TCG****A***C***GA*C-*C*G << 2725213
2348968 >> CGCGG-CAGCCAGGTCCGCTTCTGTTCCTCGGTGCCGTAGGCGAGC-AGATAGTGCGCCACGATCGCGTTGTGCA >> 2349040
2725212 << *AA**C**T*TG*GCC*****CT*G*******TT***T*GA**-**C**C***C****C*A*****T*G****** << 2725139
2349041 >> TCGCCGCGCCCCACGCGGTGTCGCCGATGCGTGCCTGCTCCTCGACCAGCACCGCCTCGTGCGCGAACGTGCCAC >> 2349115
2725138 << GC*C*TA***CTCC***GG*******CGGTTC*A******A****AC*ACC*C*****************G**** << 2725064
2349116 >> CGCCGCCGCCGTATTCCTCCGGAATCGACAG-GCCGAGCAGGCCCAGCTCGCCCGCG-GCCCGCCAGAGGTCGCG >> 2349188
2725063 << *******G********CC****C****-*C*A**TG********C**A**T**C**GG*CAA*A-*G****C*** << 2724991
2349189 >> ATCGACCTGGTGCTGGTCGATGAAGCGGTCGAGGTGGGGCTGGATCTCCTTCTCGCAGAACGCGCGGGCGAGGTC >> 2349263
2724990 << C***CCC***GG***G****G***GAAG**GAG***G**CTG**G**********T****CAA*********A** << 2724916
2349264 >> GCGCAGGGCGTCGAGGTCGTCGTCCATCCA >> 2349293
2724915 << ***A*GG**G****GG********TG**** << 2724886
Statistics
Matches: 826 (71.52%), Mismatches: 292 (25.28%), Indels: 37 (3.20%)
ATpairs: 31.48%, CGpairs: 68.52%, GTpairs: 0.00%
:i = 2725075
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 5074155
highcenter: 5074203
testcenter: 5074179
im3: 61.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2740192 center: 5223392 interval size: 300 g: 3
Alignment explanation
Indices: 2482819--2483500,2739892--2740573 Loop: 256391 Score: 323
Left Length: 682 Right Length: 682 Average length: 682.0
3 most common centers (desc): 5223392 5223393 5223391
2482809 >> (LF) GCGGTGGTCA
2740583 << (RF) GACCAGCGCG
2482819 >> GCGAACACCACACCGCCGTGCACACCCTCACCTCGGCACTGCTGGGCGGGCACAGCAATTCGACGATGGCGCGCG >> 2482893
2740573 << **********C*******G***C**C**CC**************T****G*C*CG**CG***C**C****T***G << 2740499
2482894 >> AATGCGGCATCGCCATCGCCGAC-TCGTACGCGGTGGTGGCGGTGGCGATCCCCCCGCACCGCGACGAGG-CGAA >> 2482966
2740498 << *CT****C***G*C********CC**-***GT******G***G****G**A***C******G*******GA***- << 2740426
2482967 >> TCCGGCGC-TGGACGGCCAGGTGGTCGCGCGCCGCAAACTGCGCCGGGTGCAGGCCGAACTCGCCACCCGCTGCG >> 2483040
2740425 << ****-***T*G***TG******G*GC***********C********G******A***CC**C******CG**A** << 2740352
2483041 >> GCACCGCC-GCGCTGTCGCTGCTCAGCGTCGAC-GGTGGCACCCTGCTCGTCCCG---G-CGACCATGTTCGAC- >> 2483110
2740351 << T*C*-**TT*A****C*******CA-**G*G**G*****C**T*****C******GTG*C***C**CGTG**C*G << 2740279
2483109 >> GACGACGGCCTGGACCGTCTCGTCACCGACCTCTCGCGCGCCGCGCAGGTCGGCATCACCGCC-ACCCTCGTGCA >> 2483182
2740278 << *AAG**G**C-*T**A*-****-*CCA-**ACCC*TT*-*****GC****-*G*C*ACA**C*C***C*C**-** << 2740211
2483183 >> GGCCCCGCCACCG-CAG-ATCCCCGACGCCGCCGACCAGGCGCACGAACTGCTGGACATGGTGCAGC-GCTTGCA >> 2483254
2740210 << G-*C*********T*G*C********TA*C*****T*****************G**CG***G*****A*CGG*C* << 2740137
2483255 >> GGCGGTGCCCGGCCTCTACCGCTTCGACGAACTGGCGTTGGAATACCAGCTCACCCGGCCCGGCCCGGGC-CGGG >> 2483328
2740136 << G****G-********C***CTTT*C*G***G**G***C****C**************GCC***A**G*G*T*GG* << 2740063
2483329 >> AGTACCTCGGCGCACTGCTCGACCCGCTCGACGACCATCCGGAACTGCTC-GAAACCCTGCAACGCC-ACATCGC >> 2483401
2740062 << GG-*CC***G**CA********C**G*******G***G**G*****-***G**G***T***C-****A**G*-** << 2739992
2483403 >> -CAACAACCTCAACCGCCAGCGCACCGCGCGCCTGCTGCACGTGCACACCAACACCGTCGACTACCGCCTCAAGC >> 2483475
2739991 << C****C**T*C*******C*TAC*****G**C*T****AA***G***G**********************CGCG* << 2739917
2483476 >> GGATCGGCCAGCTCACCGGCTTCGA >> 2483500
2739916 << *G****G***T*********T**** << 2739892
Statistics
Matches: 499 (71.29%), Mismatches: 165 (23.57%), Indels: 36 (5.14%)
ATpairs: 27.66%, CGpairs: 72.34%, GTpairs: 0.00%
:i = 2740192
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 5223368
highcenter: 5223416
testcenter: 5223392
im3: 99.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2740245 center: 5413102 interval size: 300 g: 3
Alignment explanation
Indices: 2672140--2673213,2739889--2740965 Loop: 66675 Score: 213
Left Length: 1074 Right Length: 1077 Average length: 1075.5
3 most common centers (desc): 5413102 5413108 5413101
2672130 >> (LF) ATGTTCGTTC
2740975 << (RF) TGTGGCTAGC
2672140 >> GGTCGCG-CGGCAGATGGTCGTGCATTTCATCGAAAACGTCGCGCCGTGTGCCACGCTGCCCGGCGAAGCC-CT- >> 2672213
2740965 << ******GA**T*-********C***G***C-**AGG**--***G*****GGCC***********C**-**TC**C << 2740896
2672212 >> CGACGGCGACGTCACCACCGTGACGCGCGTGTGCCTCGAACTGACC-CGAAGCATGCTCGAC-GG-GCGC-G-AT >> 2672281
2740895 << **-***A**********TC*****G***A*G*****C*GC***C**C**C*T-***A*****G**G****G*A*G << 2740823
2672282 >> CTGCC-CGG-CCGGGTGGAGCG-GGTCCAGGCCGCCGCCGCCGACTGGGCCCGCGAAGGCATCCCGATCGA-CAC >> 2672352
2740822 << *G***C*G*T**T*G***-***T*****CG*TT**C*****CG*T********C****GCC*C***A*-**C*** << 2740750
2672353 >> CATCCACCATGCCGTGCACGAGGGCTT-CAAACTCGGC-TTCGACCTGCTGATCGCCAATGTCACCAGCCACGAC >> 2672425
2740749 << *****AC*CG***ATG*********G*C*CG*-*-***C****CC***C*G*G***CGGG*-*-*C**C-***CA << 2740680
2672426 >> TACGACACCCTGGTGGGGGT-GATGCGG-CGGC-TGATGGACGCCCAGGACAT-GATCACCTCCGCGGTCT-CGG >> 2672495
2740679 << C***ACCC*CT***GGA***G*GGT*G*T*GA*T**G****TGACAA*G*-**G******CC****G**C*C**T << 2740606
2672496 >> CGGCCTACGTGCG-CGAACTGCGTGCGGTGGTCAGCGAACACCACACCGCGGTGCACACCCTGACCTCGGCGCTG >> 2672569
2740605 << **-****A**-**T***C*T**T*GA***G*GCG**********C*****G*G***C**C***C*******T*** << 2740533
2672570 >> CTCGGCGGCCAGAACACCTCGACGATGGCCCGGGAATGCGGGATCGAGGTCGCCGACGAATACCACGTCGTGGCG >> 2672644
2740532 << **CT******CGCG**C****C**C****T**GG*CT********GG*T*******C*AG*****C**C**G*** << 2740458
2672645 >> CTGGA-ACTGCCGCCGCACGCCGAGGAA-TCCACACCGGGCCTGAACGCGAAAGTCGTCGCGCGGCGCAAGTTGC >> 2672717
2740457 << ****GG*A*G****-****G****G**CG**C*A-***G**T*GC**T*GG*C****GC*****G******G*** << 2740385
2672718 >> GGCGGGTGCAGGCCGAACTCGCGCACCGG-TGCGACGGGAAGGTGCTGTCGTTGCTCAGT-GTCGAC-GGCGGTA >> 2672789
2740384 << *G**G******A***CC**C**-*****GG*A*****G*G*T******C**G****--**G*G*G**G**A**C* << 2740313
2672790 >> CGCTGCTGTTGCCCGC-CT-CG-GCATTCACCG-C-GAACGAGGTGGACGAGCTGATCG-GGCACCTCTCGGC-- >> 2672858
2740312 << *T******C*-*****T*CC**T***C-*****C*G*AA*TGG*G***--*-***G***G**A**-*C--***TT << 2740246
2672857 >> GGCCGCCCAGGTGCCGGTG-CGCGCGGTGGCGACCACGGCCGCGCCCGGCGAGATTCCGCGCGCCG-CCGAACAA >> 2672929
2740245 << *******C********A**A**-***TGG*A*CA***G*****GT***T*GC***G**-**TTA**C*******C << 2740173
2672930 >> GTCCACGAACTCGTCGAAATCGTGCACC-GGCTCGG-CGAG-CCGGGGAAGGTGTACCGGCCCCACGAATTGGCG >> 2673001
2740172 << *GC********CG****CG*C*G***C*A***-***T**G*C**GG**GG--*****CTTTACCG***GG*G*** << 2740101
2673002 >> TTCGAGTATCAGCTCACCCGCCCCGGGCCCGCC-CGCGACTA-TCTGAGTTCGGTGGTGGATTCGCTCGAAGCGC >> 2673074
2740100 << C*C*****G************CC***A******T*G**G*TCC**CGG*C**--**G*G**CG*G*****G**G* << 2740028
2673075 >> ACCCCGAACTGATGCAGAC-CCTCGAG-GTGTACCTGGCCACCAACATGCAGCGC-GCACGCACCGCCCGGCGAT >> 2673146
2740027 << **********G-*G*-***T**TA*G*G*GG******GC**T*C*****T*G***G*C*A*-**********TCG << 2739956
2673147 >> TGTTCGTCCACACCAACACGGTGGATTACCGCCTCAAACGAATCAGCCAGATGACCGGATTCGATCT >> 2673213
2739955 << ***********G*******G**G**G********CGCG**G***CG***TG*G*****GT******* << 2739889
Statistics
Matches: 746 (66.79%), Mismatches: 288 (25.78%), Indels: 83 (7.43%)
ATpairs: 28.28%, CGpairs: 71.72%, GTpairs: 0.00%
:i = 2740245
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 5413078
highcenter: 5413126
testcenter: 5413102
im3: 74.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2755135 center: 5353471 interval size: 300 g: 3
Alignment explanation
Indices: 2597301--2598532,2754935--2756167 Loop: 156402 Score: 1146
Left Length: 1232 Right Length: 1233 Average length: 1232.5
3 most common centers (desc): 5353468 5353471 5353472
2597291 >> (LF) CGGCTCACTG
2756177 << (RF) TCTGGATAAG
2597301 >> GTAGGCGACCTGCCAGCTCTTGATGCCGTTGAGCCACCCCGAGCGCAACCGCACCGGTTCGCTCACCTGGCGCAG >> 2597375
2756167 << *****************************C**A***C**CAA*****CC**C*****G***CGC*C********* << 2756093
2597376 >> GTTCGGCATCACGTCGGCGATCGCGTTGAAGATCAGGTCCAGCTGCAACCGGGCCAGATTCGCGCCGACGCAGTA >> 2597450
2756092 << **GC*****CC**********C********G********C*AA*GC*CC*****C**C**C************** << 2756018
2597451 >> GTGCGTGCCGGTGCCGCCGAAACCGACGTGCGGGTTCGGGTTGCGGGTGATGTCGAAGGTGTACGGGTCGGTGAA >> 2597525
2756017 << ***C*****************C**************C*********GG*************T********AG*** << 2755943
2597526 >> GTGGTCTTCGTCGAAGTTGGCCGACGCGTAGAACAAGCCGACCCGCTGGCCCTTCTTGATCGCCTGTCCGCCGAG >> 2597600
2755942 << *GG***G********T********CG**********A*****C********CCG*GC***C*A***G*****G** << 2755868
2597601 >> TTCGGTGTCCTGCAG-GGCGGTGCGCTGGAAGGCGACCACCGGCGTGGCCCAGCGCACGATCTCGTCGGGCGCGG >> 2597674
2755867 << ***GTG***-***C*A****************T**CA******C******************************* << 2755794
2597675 >> TGCGCGGGCGCTCGGCCTTGTACAGCTCCCACTGCTCGGGGAAGTCGACGAAGGCCTTCATGCCGTGCGTGGTGG >> 2597749
2755793 << **********A*****A***T**G*****************AC************************C***T*** << 2755719
2597750 >> CGTTGCGGGTGGTCTCGTTGCCCGCCACGGCCAGCAGGATGACGAACCAGGCGAACTCGTCCGACCCCAGCGACT >> 2597824
2755718 << ****************************G*T***************CT**G**********C**CC*****GGC* << 2755644
2597825 >> CGCCCTCGATGTCGGCGGTG-ACCAGCTGGCTGACGATGTCGTCGGCCGGGCACTTGCGCCGCTCCTCGGCCAGG >> 2597898
2755643 << ****C**G*G*******-**G**C****G*C**********G***********CCGA**C****CA*******A* << 2755570
2597899 >> TTCCAGGAGTACCCCATGATCTCGGCGGTGGCCACCTTGTGGTTGCCGTCGAAATCGGGATCGTCGTAGCCCATC >> 2597973
2755569 << *******G***T**C*C***A*****G*T*****A*CGGC***G*****--*G-*****C*********AAC*C* << 2755498
2597974 >> ATCTGGTTCGACCAGTCGAAGAGCTTGCCGCGGTCGGCCTGCGGCACGCCGAGCAGTTCGGCGATCGCCTGCAAC >> 2598048
2755497 << **********************G*****C******GA**********************************A*C* << 2755423
2598049 >> GGCAGCTCACAGGCCACCTGCTGCACGAAGTCACCGCCGCCGGTCTTCTTGGCCTCGTGCACGATCCGCTCGGCC >> 2598123
2755422 << ********C*****C*****A*GC*****T**C****A***G*G*GC***G**************C********C << 2755348
2598124 >> CGCTCG-TGCAGGGCGTCGCGCAGCGACTGCACCGCGCGCGGGGTGAAGCCGCGGGAGATGATGCGGCGCAGCTT >> 2598197
2755347 << **A***C**-**G***C*******CGA**G******G***********T**GAA**G******G*****C*A*** << 2755274
2598198 >> GTCGTGCGCGGGCGGATCGGTGTTCACCAGCATGGCCCGCTGGA-T-GTCGATCTCCTCGCGGG-TGATGTCGGC >> 2598269
2755273 << *CT****AA******C**GT******C*****-*-*C***G**AG*G**AG****C**-*****C********G* << 2755202
2598270 >> GTTGAAGC-GGATGACCGCGGTGTTCTCGTGGTTCGACCAGATCTCGGGCGTCTTG-GAGATCTCCTTGATGTCG >> 2598342
2755201 << *C-*G***G******AC*T*GGG**CTCG***CTC**CT***CA**G**T-*CCG*G****************** << 2755129
2598343 >> GAGAGCTTGCTCACCACCCAGTACCCGCCGTCGTCGAACCCGCTGGTG-CCG--TCGGGCTGGTCGAC-CCACCA >> 2598413
2755128 << *G*********************C**********C***C****G**T*A***GC****T***GC-**AA****** << 2755055
2598414 >> CACCGGAGCGGTGCGGCGCAGCTCGGCCCATTCCGCCACGGG-CAAC-CGGGTGGCGAGCAGGTCGGGGTCGGTG >> 2598486
2755054 << C*****G***************TC***CT*G***A*C*****T*CC*C*G**-*G*G*-****G*********** << 2754982
2598487 >> AAGTCGAAGTCGTGCGAAAGGGACGGCGCGGACACGGC-TACCTCCT >> 2598532
2754981 << *********G*GC*C*CG**G*****A***GA**A**CC******** << 2754935
Statistics
Matches: 989 (79.31%), Mismatches: 229 (18.36%), Indels: 29 (2.33%)
ATpairs: 31.95%, CGpairs: 68.05%, GTpairs: 0.00%
:i = 2755135
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 5353447
highcenter: 5353495
testcenter: 5353471
im3: 39.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2769771 center: 5296448 interval size: 300 g: 3
Alignment explanation
Indices: 2526146--2526919,2769525--2770302 Loop: 242605 Score: 595
Left Length: 774 Right Length: 778 Average length: 776.0
3 most common centers (desc): 5296448 5296445 5296449
2526136 >> (LF) CACCGTCCCG
2770312 << (RF) CGGGGCAACT
2526146 >> TCCGAACCGATGTCCCGTCCTCGGCGCGCATCTGGAACTTCTGGCTGGGCGGGCGTGACTACTACGAGGTGGACC >> 2526220
2770302 << ****C*****GT*****GT********************T****T*******GTTC***********TT*G***T << 2770228
2526221 >> GCCAAGCCGGTGAAGCAGGGC-TGGCCAGCTATCCCGAGATCCGCTCGATGGCGGTGCAGTCCAGGCAGTTCCTG >> 2526294
2770227 << *CCAG*****G**G**-****T*G*TCCA*C*G*****G***TG*T*G**************CG**********G << 2770154
2526295 >> ATCCGGGCCGTGCACTGGCTGGCCACCGAGGCCGGGGTGCGCCAGTTCCTCGACATCGGCACGGGTCTGCCCACC >> 2526369
2770153 << *****G*******CC*AG*******C****TA***GT*G***********************G**G********* << 2770079
2526370 >> ATGCAGAACACCCACGAGGTGGCCCAGGCCGCGGCGCCGGACGCCAAGATCGTCTACGTGGACAACGACCCGCTG >> 2526444
2770078 << ***************************TC**AG********CA*****C**********G********A****** << 2770004
2526445 >> GTGCTGGCCCATGCCAGGGCGTTGCTGGTCAACACCACCGACGAGGGCGTGACCACCTACATGGAGGCCGATTTC >> 2526519
2770003 << *****GT****G*********G*****TG**C*******GG************C******C*G**GAC***G*** << 2769929
2526520 >> AACGCTCCCGAGCTCATCCTCGCCGACAGCCGCAACGTGCTGAACCTGAGCAAGCCGGT-GGCGGTGATGTTCAT >> 2526593
2769928 << G***TG*******TC***T********CG************G**A****T*C*T*****G****-********** << 2769855
2526594 >> CGGCGTCCTCGGCCACGCCGCCTCCTACGAGGACGCGCGCCGCGTGGTGCGCACCATCATGGAGCCGCTGGCCTC >> 2526668
2769854 << C*****C************TTCT*******G**TGA*******T*G***CT****C*CG*G*G*C**C**G**** << 2769780
2526669 >> GGGCAGCTACCTGGTGCTCTACGACGGCACCACCGACGATCCCGGCTACGTCCGGCTGTGCGCGAACTACGCGAA >> 2526743
2769779 << ***************GT*C*CC*********CT****TC*C***TC******CGG******TT*********GC* << 2769705
2526744 >> AACCGGTGGGGTGCCCTACACGCCGCGCACCTCCG-AGCAGATCCGCGGACTGTTCGACGAGCTCGAACTCGTCG >> 2526817
2769704 << *********G********ACAA*****C-**C*T*C*******A****GCC*********CTA*C**CT*C**C* << 2769631
2526818 >> AACCCGGTGTGGTGCCGATCAATTTCTGGCGCACCGACGAGGCCGAGCAGGGCGT--TC-GTCGCGCG-TCGGCC >> 2526888
2769630 << ****C**CA*G**GA*G****GCGTC*****CG******GGT**G**CA*****TCT**G*C*-**TAG****** << 2769557
2526889 >> TGGGGCGGGGTCGGCCGCAAGCCCTGAC-CCG >> 2526919
2769556 << *TG****G*****GC*************C*** << 2769525
Statistics
Matches: 593 (75.83%), Mismatches: 177 (22.63%), Indels: 12 (1.53%)
ATpairs: 32.21%, CGpairs: 67.79%, GTpairs: 0.00%
:i = 2769771
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 5296424
highcenter: 5296472
testcenter: 5296448
im3: 60.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2777684 center: 5555314 interval size: 40 g: 1
Alignment explanation
Indices: 2777630--2777655,2777660--2777684 Loop: 4 Score: 40
Left Length: 26 Right Length: 25 Average length: 25.5
3 most common centers (desc): 5555314 5555315 0
2777620 >> (LF) GAAGCGAAAA
2777694 << (RF) AAGGGCGCGC
2777630 >> CGGGCGATTTCCGGTGGAATCTGTGA >> 2777655
2777684 << ****************T****-**** << 2777660
Statistics
Matches: 24 (92.31%), Mismatches: 1 (3.85%), Indels: 1 (3.85%)
ATpairs: 41.67%, CGpairs: 58.33%, GTpairs: 0.00%
:i = 2777684
tupleindex: 1
intervalindex: 2
matches_in_interval: 28.0000
lowcenter: 5555306
highcenter: 5555322
testcenter: 5555314
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 2789681 center: 5529605 interval size: 300 g: 3
Alignment explanation
Indices: 2739892--2740925,2788686--2789713 Loop: 47760 Score: 281
Left Length: 1034 Right Length: 1028 Average length: 1031.0
3 most common centers (desc): 5529605 5529611 5529604
2739882 >> (LF) GGTGGCCAGA
2789723 << (RF) CAACCACCCC
2739892 >> TCGATGCCGGTGAGTTGGGCGATGCGGCGCAGGCGGTAGTCGACGGTGTTGGGGTGGACGAACAGCTGCCGGGCG >> 2739966
2789713 << ****T****T*G**C**TG*******GAAC**********************A***G***AC****T******** << 2789639
2739967 >> GTCATCCGGCGGTTCATGTCGTTGCGCAGGTAGGCGCGCATGGTGTCGGAG-AGTTCGGGGTGGGCGTCGAGGGG >> 2740040
2789638 << **CGC*A*A**T**C*C**A*C**CTC*A**CGT******C***A**G-**G**G*******TGA*G******** << 2789565
2740041 >> CTCGAGCAGACCGGCGACCTGG-CGGGTGGCGGGACCGCCGCGGGTGAGCTGGTACTCCACCGCGAGGTCGGCCA >> 2740114
2789564 << T********G***G***CC*TGA**G*-******C***CCG**************A****CC**G**T****AC* << 2789491
2740115 >> TTTCGTACAGGCCGGGGCCGC-GTCCGGCCAGCTGCGCCAGCTCGAGCAGTTCGTGCGCCTGTTCGGCCGATTCG >> 2740188
2789490 << TGGC***C********GA***A**C*TAC*-*****T***AC**************C*****C*****C*GG*CG << 2789417
2740189 >> GGGATCCGGTC-GG-T-GGCGGCGGTGACCACGGTCGCCGACAACGGCACCTCGGCGGCCTTGCCCAGTACCGCG >> 2740260
2789416 << **A*G******G**G*G******GTG****C***-*-***-**G********CG******GGGCT***CGCC*** << 2789345
2740261 >> AGCAGTTCCGCG-GTGAA-CGGCCGGTGCTGCTCGCCG-TGCGGGACCAGCAGTGTCCCACCGGTGGGCGAC-AG >> 2740331
2789344 << *G***C**CA*GT*G*GGA**A***G-**T*C-**A**C**-****A***C*GC**C**C***-*GGT**GAC** << 2789274
2740332 >> CAGCGCCAGCACTTGCGCGTCGAAGGCGGTGGCCAGCCCGGACTGCACGCGGCGCAGCTTGCGGCGCGCCGCGAC >> 2740406
2789273 << ***A*T**T*C*CCG*A**G***GGGC***G******A***G***A**A*A************G**C**CT**** << 2789199
2740407 >> CTGGGTGTCGA-TGCGCGGATCGAGCTCGTCGGGGTGC-GCGGGAATGGCCAGCGCGACCACCTGGTA-GACCTC >> 2740478
2789198 << CGG*GG***G*C***-***C*A*A**************A****-**GG*****C**G*CC**C**T**G***C-* << 2789127
2740479 >> GGCGATCGGGATCCCGCTCTGGCGTGCCACCGCCGAGCTGGCGCGGCCGCTC-AGCAGTGCCGAGGCCAGCGTCT >> 2740552
2789126 << *********T**C****T**GT**GT***AC*A****C***A*AA***-*C*C*****G*******AC**C**C* << 2789053
2740553 >> GCGCGGCGGTCTGGTGTTCGCGCG-CGACCAGATGCTGCTCGTCG-ACATAGGCGTCGCACACGGCGGCCGTGAT >> 2740625
2789052 << **T*G**G**C********T*-**T*****CGCG**T****G-**G*********C**C*C*****GT*C***** << 2788980
2740626 >> CGATTGCAACAGTTCCAGCATGAGGTCGGTG-GCGACCAGGACCTCGCCCACGTCA-CC-GTCCTC-GGCGGGCG >> 2740696
2788979 << C*GC*-*C*C-*T**AG-*****TG-***G*G**G**CAA**A*TC**A*A***T*A**A**C*C*A***GA*C* << 2788909
2740697 >> CGGTGACCAGCCCGAACGCCA-TGCGCAGGCCCTCGTGGTAGGCGCGCAGGATGGTGCTCAA-CGGCACCGCTTC >> 2740769
2788908 << TAAC**A***TA****TGAC*C*AA*T**-*********TA****A**A*T******-**C*A***C*ACG*G** << 2788836
2740770 >> CCGGGCCCATTGCGCGGCCGCTTCGCGGACCTCGCCCAGCTGGTCGGCGGCGGGTACGGCGCGCCGGTCGAACAT >> 2740844
2788835 << C**G*****CGG***G**C**CC**CG*******A*C*--**A**A-**G**T-*-*A-**A*T*G*****C*** << 2788767
2740845 >> TTCCGC--GGCCAGCGCCAGGCAGAAGCGGGTCACCTTGGTGACGTCACCGCGCAGCTGC-TCCCCGGGCAGCGT >> 2740916
2788767 << --****GA**A**TAA********CG******C***CG*********C***CG****-**C**C********A** << 2788695
2740917 >> CCGGCACGG >> 2740925
2788694 << A*G****** << 2788686
Statistics
Matches: 714 (67.42%), Mismatches: 289 (27.29%), Indels: 56 (5.29%)
ATpairs: 26.75%, CGpairs: 73.25%, GTpairs: 0.00%
:i = 2789681
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 5529581
highcenter: 5529629
testcenter: 5529605
im3: 89.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2799754 center: 5303654 interval size: 300 g: 3
Alignment explanation
Indices: 2503893--2503954,2799700--2799761 Loop: 295745 Score: 60
Left Length: 62 Right Length: 62 Average length: 62.0
3 most common centers (desc): 5303654 5303656 5303655
2503883 >> (LF) GGGTTGTGCG
2799771 << (RF) TCCAGCGCAA
2503893 >> CGGCGGCCGCGGCGGCGATGTGCTCGACGGCCGTGCGCAGCG-AC-TGTTCGGCCTCGGCGGCG >> 2503954
2799761 << ***************A*C*G****CAC*****-*-***C***C**G******T*********** << 2799700
Statistics
Matches: 52 (81.25%), Mismatches: 8 (12.50%), Indels: 4 (6.25%)
ATpairs: 17.31%, CGpairs: 82.69%, GTpairs: 0.00%
:i = 2799754
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 5303630
highcenter: 5303678
testcenter: 5303654
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2801909 center: 5161856 interval size: 300 g: 3
Alignment explanation
Indices: 2359946--2359997,2801859--2801910 Loop: 441861 Score: 42
Left Length: 52 Right Length: 52 Average length: 52.0
3 most common centers (desc): 5161856 5161857 0
2359936 >> (LF) GGAGTTCCGT
2801920 << (RF) CTGGCGCGAG
2359946 >> GCCGCGCACGCCGCCGCCCGCGACGCCGTGC-ACCTGCCGTTCGACGCCGCCG >> 2359997
2801910 << *********GC*********T**C***G-**C***C*CC*T*C********** << 2801859
Statistics
Matches: 41 (77.36%), Mismatches: 10 (18.87%), Indels: 2 (3.77%)
ATpairs: 12.20%, CGpairs: 87.80%, GTpairs: 0.00%
:i = 2801909
tupleindex: 3
intervalindex: 1
matches_in_interval: 105.0000
lowcenter: 5161832
highcenter: 5161880
testcenter: 5161856
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2829313 center: 5658257 interval size: 80 g: 2
Alignment explanation
Indices: 2828943--2828987,2829270--2829314 Loop: 282 Score: 43
Left Length: 45 Right Length: 45 Average length: 45.0
3 most common centers (desc): 5658257 5658258 0
2828933 >> (LF) ACCCCGCGCT
2829324 << (RF) AAGCGCCGGC
2828943 >> CGCTCGCCACCTCGACGAGGTCGCCGTC-GGCGGCGCCGATCTCGG >> 2828987
2829314 << ******C**********CA*-******CT******T***G*C**** << 2829270
Statistics
Matches: 37 (80.43%), Mismatches: 7 (15.22%), Indels: 2 (4.35%)
ATpairs: 18.92%, CGpairs: 81.08%, GTpairs: 0.00%
:i = 2829313
tupleindex: 2
intervalindex: 1
matches_in_interval: 32.0000
lowcenter: 5658245
highcenter: 5658269
testcenter: 5658257
im3: 21.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 2845171 center: 5364562 interval size: 300 g: 3
Alignment explanation
Indices: 2519204--2519623,2844938--2845358 Loop: 325314 Score: 232
Left Length: 420 Right Length: 421 Average length: 420.5
3 most common centers (desc): 5364562 5364561 5364563
2519194 >> (LF) GGCGGGTAAT
2845368 << (RF) GCGCCCGCCG
2519204 >> TTCGGCGTCGGCAAGACGACCTTCGTCAGCAGCG-TCTCCGAGATCAAGCCGCTGCGTACCGAGGAGAC-CATCA >> 2519276
2845358 << *****C*****A*****G***T*C**CA-*C***T**TC********G***T**T**G********-**A***** << 2845286
2519277 >> CCGAGGCCAGCATCGGGGTGGACGACATGGCGGGTCTGCCGGG-C-AAG-ACGCAGACCACGGTCGCGATGGACT >> 2519348
2845285 << ******A***A*G***G**G******G**A*G**-*-*A**TTA*G***C*TT*G-********C***G*G**A* << 2845214
2519349 >> TCGGGCGCATCACCCTGAATCCCACGCTGGCGCTGTACCTGTTCGGCACGCCCGGCCAGCAGCGGTTCGTGCCGC >> 2519423
2845213 << ****A*********T*GC*G*CCCTA**G*A******A***********T**C******C*G**T***AC*AAG* << 2845139
2519424 >> TGTGGGAGGAGCTGGCCCGGGGCGCGCTCGGCGCGCTGGTGCTGGTCGACACCCGCCGGATCGAG-AAGTCCGAC >> 2519497
2845138 << *******G**TA**A********************C*********G***A*****C**GG**-**G**A***AA* << 2845065
2519498 >> GAGGTGCTCTCGGTGCTCGAGGAGCGCGGAGTGCCGTAT-TCGGTGGCGGTCAACCAGTTCGACGACGG-CCGGG >> 2519570
2845064 << *GG*G*C**CTAA*GA*****GC******CG******AGT**TAG****-*****ACG*******C**GT***G* << 2844991
2519571 >> TCTAT-CCGCTCGACGAGGTGCGCGACGCGCTCGACCTCTCGCCGGAGAC-CCCG >> 2519623
2844991 << -***GT***-*C********************C******CTA********C**** << 2844938
Statistics
Matches: 312 (72.56%), Mismatches: 99 (23.02%), Indels: 19 (4.42%)
ATpairs: 31.09%, CGpairs: 68.91%, GTpairs: 0.00%
:i = 2845171
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 5364538
highcenter: 5364586
testcenter: 5364562
im3: 79.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2866674 center: 5245733 interval size: 300 g: 3
Alignment explanation
Indices: 2379059--2379121,2866613--2866674 Loop: 487491 Score: 45
Left Length: 63 Right Length: 62 Average length: 62.5
3 most common centers (desc): 5245733 5245732 5245734
2379049 >> (LF) CGCGGGCGCC
2866684 << (RF) AGGCTACTCT
2379059 >> GCACCGCCCTAC-CCG-CGCCGGCTCCGGCTGCCCGCCGCCGTGCTCGCCGCCGCCGCGCCCGGC >> 2379121
2866674 << *******CCT**T***A***-***T*A*-***C*********GG**********A**-**T**** << 2866613
Statistics
Matches: 50 (76.92%), Mismatches: 10 (15.38%), Indels: 5 (7.69%)
ATpairs: 8.00%, CGpairs: 92.00%, GTpairs: 0.00%
:i = 2866674
tupleindex: 3
intervalindex: 1
matches_in_interval: 109.0000
lowcenter: 5245709
highcenter: 5245757
testcenter: 5245733
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2869914 center: 5363079 interval size: 300 g: 3
Alignment explanation
Indices: 2492861--2493344,2869735--2870217 Loop: 376390 Score: 317
Left Length: 484 Right Length: 483 Average length: 483.5
3 most common centers (desc): 5363079 5363080 5363078
2492851 >> (LF) TGAGGCGAAC
2870227 << (RF) GGCCGCGAGT
2492861 >> GCCGTGGCGCCTGCCGGTGGCCC-CGCCGGCGCCACGGCCCGATCATCCACGCCAGCAGGAACGACACCGCGAGC >> 2492934
2870217 << ****CG*****-***GG-*****C****TG*********CT***C*C***C**C*A***************G*G* << 2870145
2492935 >> ACGACCGCC-GCCGCGGCGGCGGCCTCCTCGCCGAGGATCCGGTCCACCACGAGCACCAGCGCCCCCGTCAACGC >> 2493008
2870144 << *-*GC****G*******TGG*G***C**CC*AC**G**GCTA*********G**C*******T***CTG**C*** << 2870071
2493009 >> CACCGCCAGGCA-CACCATGCCCGCGGCGGCGAACCGGTGCGCGGCGGCGACCAACTGTTCG--AGCCGGTGCCT >> 2493080
2870070 << C**TG***T-**C*C***C*******TAG***G*C*****C*****G**G****-*-***C*GG**********C << 2869999
2493081 >> GCGGAACAGCACCCGATGCCAGGCCACCGGCGCGACGACGAAGACCGTCGCCGCCACCGAGGCGCCCATCGTGGT >> 2493155
2869998 << *********C*A*********G*T************G*TG*CG********TG*C*TC*GG***C*T*GC****G << 2869924
2493156 >> CAGATAGATCGCGCGCATGCCGGT-GTCGAGATCGGCGAAACCGGGCTGGAACGGCAGGGTCACCAGGAAACCGG >> 2493229
2869923 << ***C****G*******-*GT****G*CTG**A********G****GA**********G*T***C****CGC***T << 2869850
2493230 >> TCAGCAACTGCACACCGGTCTGCAACACCCGCAGCTCCTGCAGCAGA-TGTGACCAGTTGCGGTCCAGCCGTTGG >> 2493303
2869849 << G***C********G********A*G***C*****A*****C*G***CG***A-********************G* << 2869776
2493304 >> GTTTTCGTCTCGCCCCTGGCCCGGCGATTCCAGCCGTCGTC >> 2493344
2869775 << ****GC***************TGG**C******C******* << 2869735
Statistics
Matches: 364 (74.13%), Mismatches: 112 (22.81%), Indels: 15 (3.05%)
ATpairs: 27.75%, CGpairs: 72.25%, GTpairs: 0.00%
:i = 2869914
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 5363055
highcenter: 5363103
testcenter: 5363079
im3: 83.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2892879 center: 5338309 interval size: 300 g: 3
Alignment explanation
Indices: 2445429--2445491,2892819--2892880 Loop: 447327 Score: 47
Left Length: 63 Right Length: 62 Average length: 62.5
3 most common centers (desc): 5338309 5338310 0
2445419 >> (LF) GGGTTCTCCG
2892890 << (RF) GCGTCGTGCA
2445429 >> CGGCGAGCGCGTCGAGCCGGTCG-AGGCGGCGGGCGGCGGCGTAGACGGTCGCGCCCGCGCCGG >> 2445491
2892880 << **************A-*C**T**G**TAG**G**T*************TGC****C**-***** << 2892819
Statistics
Matches: 49 (76.56%), Mismatches: 12 (18.75%), Indels: 3 (4.69%)
ATpairs: 12.24%, CGpairs: 87.76%, GTpairs: 0.00%
:i = 2892879
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 5338285
highcenter: 5338333
testcenter: 5338309
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2921654 center: 5528384 interval size: 300 g: 3
Alignment explanation
Indices: 2606698--2606910,2921474--2921686 Loop: 314563 Score: 100
Left Length: 213 Right Length: 213 Average length: 213.0
3 most common centers (desc): 5528384 5528383 5528385
2606688 >> (LF) GTCGAGGTCG
2921696 << (RF) CCGGTGGCTT
2606698 >> TGGGTGACGAAGACGACGGTGGTGGGATGGGCCCGCCAGGTGTCGACG-AGCA-GTCGTTGCATGCCCGCCCTGG >> 2606770
2921686 << ********G*CG*CG*********GGGCAAA********T*-****A*G**AAG*T****-***G*C*A****** << 2921614
2606771 >> TCTGGGTGTCCAGCGCGCCGAACGGCTCGTCCATCAGCAGGGCGCGCGGCGCG-GCGGCCAGCGCGCGGGCGAGC >> 2606844
2921613 << *CT*G*G***C*****************T***********GT*AAG***AA**A**T**-**C**G***GTG*** << 2921540
2606845 >> TGGACCCGCTGGCGCATGCCGCCGGACAGGTCGCGCGGCAGGTAGTCGGCGTAGCCGGTGAGGCCG >> 2606910
2921539 << CTT********GA****T********C**G***A******TACG**AGA**T*A********G*** << 2921474
Statistics
Matches: 152 (70.37%), Mismatches: 58 (26.85%), Indels: 6 (2.78%)
ATpairs: 28.29%, CGpairs: 71.71%, GTpairs: 0.00%
:i = 2921654
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 5528360
highcenter: 5528408
testcenter: 5528384
im3: 84.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2950061 center: 5521748 interval size: 300 g: 3
Alignment explanation
Indices: 2571338--2571927,2949821--2950413 Loop: 377893 Score: 285
Left Length: 590 Right Length: 593 Average length: 591.5
3 most common centers (desc): 5521748 5521751 5521747
2571328 >> (LF) TCACCCGCGT
2950423 << (RF) GCTAGAGCCG
2571338 >> GAACGACGGGGTCTCGGCGAGCGCGAC-GCGGATGTAGAGGCCGAGCGCCACCAGCACGATGCTGAGCAGGAACG >> 2571411
2950413 << ****TG****G****GA***G*-**G*A***G*GGG**CG*****G***C*A******G*GGCT**T******** << 2950340
2571412 >> GAATCCGCCATCCCCACACCAGGAACTGGTCGCCGGTCACC-GCGCG-CG-TGC-CGAACATGACGCCGGTGGCC >> 2571482
2950339 << *C**C*****C*****CA*C******CGG**T****CC*T*T*****A*GT***A**G-***G*A*C**G***** << 2950266
2571483 >> AGCAGCAGTCCGGCGGGCACGCCGACCTGCGGCATGGAACCGTAGAAGCCGCGGCGGT-TCTTCGGGGCGTACTC >> 2571556
2950265 << ********C***TA******T****A***C*****G*GC***T*G*C******G****C**CT-**A****C*** << 2950192
2571557 >> GACCGCGGTGAGCACCGCGCCGCCCCACTCGCCGCCGACCCCGAATCCCTGGATCAGCCGCAGCACCACCAGCAA >> 2571631
2950191 << ***C**GT*G********T**************T***C**CT**GC*****G*C**GC*******C********C << 2950117
2571632 >> CACCGGCGCCCACATGCCGATCTGCTGGGAGGTGGGCAGCAGGCCGACCGCGAAGGTGGCGGCGCCCATCAGCAG >> 2571706
2950116 << **C***A**C*GC**T*****CCG**GTA************T*****A*TC*CG********A*********C*A << 2950042
2571707 >> CAGCGCCACCACCAGCATCTTCTTGCGGCCGATCCGGTCACCGAAATGTCCCATGACGATGCCGCCGAGCGGCCG >> 2571781
2950041 << *****ACCAC*******G*CCCGC********G*AA***C*****C**G**CCG**C**T*C*G**G*T****** << 2949967
2571782 >> GGCCACGAAACCCACCGCGAAGGTGGCGAACGACAGGATGGTGGCCA-GCCAGGGCTCGACGCCGGAGAAGAACA >> 2571855
2949966 << *TT**C***C*AC*ACG***GG***TC***C************G*C*T***C**T*-**C**CCAAG******** << 2949893
2571856 >> AGG-GCGCGAACACCACGGCGGCGGACGCGCCGTAGATCTGGAAGTCGTACCACTCGATGGTGGTGCCGACGA >> 2571927
2949892 << *G*A**-*******C*C*G******G****C*T****GCTT*A*************G*GG*GG**T******* << 2949821
Statistics
Matches: 421 (70.40%), Mismatches: 164 (27.42%), Indels: 13 (2.17%)
ATpairs: 29.45%, CGpairs: 70.55%, GTpairs: 0.00%
:i = 2950061
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 5521724
highcenter: 5521772
testcenter: 5521748
im3: 86.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2956868 center: 5739532 interval size: 300 g: 3
Alignment explanation
Indices: 2782093--2782793,2956739--2957433 Loop: 173945 Score: 87
Left Length: 701 Right Length: 695 Average length: 698.0
3 most common centers (desc): 5739532 5739526 5739529
2782083 >> (LF) GCCCGCGACG
2957443 << (RF) GCCGTGGTCG
2782093 >> AGGTGGTCCTGGAGGTTCGCGCCGACCT-CGGGTGCGTGCCGGACCACGGGGATGCCGTGCCGGGCCAGCTCGTC >> 2782166
2957433 << ********C**G******AA***G****C****-****GT**G*****GAG***G***T**CGGA*C**C***C* << 2957360
2782167 >> GGCGTCGCCGACGCCGGACAGCATCAGCAGCTGCGGGCTGTTGATCGCACC-GCCGCACAGCACCACCTCGCGCC >> 2782240
2957359 << ****CCG****AA***GACG***C**T**G***********G**C***C**G**C**-*********A***A-*- << 2957288
2782241 >> GCGCCCGCACCACGAATGTCTCGGT-GCCGCGGCGGTATTCG-ACCCCGACCGCCCGCGTGCCCTCGAACAGCAC >> 2782313
2957287 << *-****T*C**A**CG-***GA*TGG*A**A****T**C-**G**C****A***C**CGG*A******AC*G*** << 2957216
2782314 >> CCGGGTGG-CGAGCGCCTCGGGTAGCACGGTGAGGTTCGGTCGGCGCATGGCCGGTTTCAGGTAGGCGTCGGCGG >> 2782387
2957215 << *-*T***GT**A****CG***ACG*C*****G**G--******-****---****GCGC********G*AGGT** << 2957148
2782388 >> TGCTCCACCGCCTGCCGCCGTGCTGGGTGACCATGGTC-TGGCTGAAACCCTTGGG-CTGCGGGCGGTTCG-G-C >> 2782458
2957147 << **A*CTG****AG****A**G*TTG*A***A*-**G**G*A*CT**AA****GGT*T**-**G**G***CAT*A* << 2957075
2782459 >> GGC-TCCACCGGGAAGCCGGACTCCTGCACCGCGGTCAGGAACG-CCGC-GG-TCGAGGCGCGCGGGCTGCGCTG >> 2782529
2957074 << **CC*AC*T***T*A***G*G**CATG*C*C****G**G**A**T***CA**T***C*A**T*****AT*A-*-* << 2957002
2782530 >> GTGCTCGACGTGGATCGGCCCGCCGGTGCCCTCGT-CGGGGTACTGCGCGTCCTG-GACGTTCTCGATGCGCCGG >> 2782602
2957001 << A**-**G**GC*G*C***T*****G*GT**C*C**T*AGG*-**-****GT**C*T**T**G*******CG**** << 2956930
2782603 >> TACTGCTCCACCGCGG-CGGCGAAGCCCCACTC-GTCCCCGGCCAGCAGTGCCCACTCGTCGTAGTCGGCGCGGA >> 2782675
2956929 << **CTG*CC**C*T**AA*AG*G*G****-*C**G*CC****-*C*G*AGC*****C*C************GC**C << 2956857
2782676 >> AGCCACGCACCCACATCATCGCGTTCATCGACGAG-GAGCCGCCGAACATCCGCCCGCGCGGCCAGTAGATGCGG >> 2782749
2956856 << G***C********C**CC*C*****C*CC*-**A*G**********C**G*AAC*********TC**CG*CG*A* << 2956783
2782750 >> CGCCCGTCCAGGGCCG-GCTGCGGCTCGGTCAGGTAGTCCCAGTC >> 2782793
2956782 << **A***C**-*G****G*******CT*A**CAT************ << 2956739
Statistics
Matches: 467 (64.86%), Mismatches: 209 (29.03%), Indels: 44 (6.11%)
ATpairs: 23.77%, CGpairs: 76.23%, GTpairs: 0.00%
:i = 2956868
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 5739508
highcenter: 5739556
testcenter: 5739532
im3: 62.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 2957979 center: 5739472 interval size: 300 g: 3
Alignment explanation
Indices: 2781423--2781581,2957891--2958049 Loop: 176309 Score: 126
Left Length: 159 Right Length: 159 Average length: 159.0
3 most common centers (desc): 5739472 5739471 0
2781413 >> (LF) GGGCCGCCTG
2958059 << (RF) CGCGCGGCTT
2781423 >> CTCGCCGACGAACACGCTCGGCGCGTGCGTGT-GCCCGCGGACCAGCAGCGGCATCACCGACGCGTCCGCCACCC >> 2781496
2958049 << ***T****AG*C***GCT********AC****A***C*A**ACTG**-*******C*A***C******T*C**** << 2957976
2781497 >> GCAGCCCCGCCACGCCGCGGACCCGCAGCTGCGGATCGACCACGCTCACCGGGTCGGTGCCCATGCGGCAGGTGC >> 2781571
2957975 << ****C**CA*******G*A***C******G**************CG*C*CAG*****G******G********** << 2957901
2781572 >> CGACCGGGTG >> 2781581
2957900 << *****A**** << 2957891
Statistics
Matches: 122 (76.25%), Mismatches: 36 (22.50%), Indels: 2 (1.25%)
ATpairs: 22.95%, CGpairs: 77.05%, GTpairs: 0.00%
:i = 2957979
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 5739448
highcenter: 5739496
testcenter: 5739472
im3: 44.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3007024 center: 5957090 interval size: 300 g: 3
Alignment explanation
Indices: 2949947--2950165,3006925--3007143 Loop: 56759 Score: 74
Left Length: 219 Right Length: 219 Average length: 219.0
3 most common centers (desc): 5957090 5957091 0
2949937 >> (LF) TTCCTCACGG
3007153 << (RF) CGCCGCCACA
2949947 >> TCGGCATCAGCTTCCTGTTCCGGCCGTTGGGGGCCTTCCTCGCCGGGCA-CTTCGGCGACAAGGTCGGCCGCCGC >> 2950020
3007143 << ***G*C**C********T*C**A***G*G**G*C**CCC-**AA****GC**T**G****GC*A*********** << 3007070
2950021 >> CCGGTGCTGGTCACCACGCTGATCCTGATGGGCACCGCCACCGCC-CTGATCGGCTTGCTGCCCACCTATGAGGC >> 2950094
3007069 << A*G*G***ATG*GACA**C***G*C******GCC***CCA*-**AC*******GCC**TG****CC*****G*T* << 3006996
2950095 >> CATCGGTATCGGCGCACCGCTGCTGCTGGTGCTGCTGCGCGTGCTGCAGGGCGTCTCGGCCGGTGGCGAGT >> 2950165
3006995 << C*****G****G***G***C**T*G***G*****CG***CG**********AG*C****AC**G******* << 3006925
Statistics
Matches: 149 (67.42%), Mismatches: 68 (30.77%), Indels: 4 (1.81%)
ATpairs: 26.85%, CGpairs: 73.15%, GTpairs: 0.00%
:i = 3007024
tupleindex: 3
intervalindex: 1
matches_in_interval: 129.0000
lowcenter: 5957066
highcenter: 5957114
testcenter: 5957090
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3039691 center: 5720361 interval size: 300 g: 3
Alignment explanation
Indices: 2680667--2680768,3039593--3039694 Loop: 358824 Score: 41
Left Length: 102 Right Length: 102 Average length: 102.0
3 most common centers (desc): 5720361 5720362 5720359
2680657 >> (LF) GCGTTGCCTT
3039704 << (RF) GGCCGGAGCT
2680667 >> CCGCGCGGCGGGAGCCGGTGCGGGCGCCGCCCGTCTCGGCCGCGGCGCGTC-CG-CGGGCGGGGCGATCGGCGTG >> 2680739
3039694 << **G*******GAC****T*G**GA*******-*G*GC******G**GC*T*A**A**TG**G**-********G* << 3039622
2680740 >> G--CTGCCCACGGCCTCGGTGGTGCGGGCGC >> 2680768
3039621 << *AC***C****--******G*GG******** << 3039593
Statistics
Matches: 75 (70.75%), Mismatches: 23 (21.70%), Indels: 8 (7.55%)
ATpairs: 8.00%, CGpairs: 92.00%, GTpairs: 0.00%
:i = 3039691
tupleindex: 3
intervalindex: 1
matches_in_interval: 114.0000
lowcenter: 5720337
highcenter: 5720385
testcenter: 5720361
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3048738 center: 6097433 interval size: 40 g: 1
Alignment explanation
Indices: 3048695--3048714,3048719--3048738 Loop: 4 Score: 40
Left Length: 20 Right Length: 20 Average length: 20.0
3 most common centers (desc): 6097433 0 0
3048685 >> (LF) CATCACAGCA
3048748 << (RF) CCGCGTTATC
3048695 >> TCAGCGAGCAATGCGCCATT >> 3048714
3048738 << ******************** << 3048719
Statistics
Matches: 20 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 45.00%, CGpairs: 55.00%, GTpairs: 0.00%
:i = 3048738
tupleindex: 1
intervalindex: 2
matches_in_interval: 24.0000
lowcenter: 6097425
highcenter: 6097441
testcenter: 6097433
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3052462 center: 6002581 interval size: 300 g: 3
Alignment explanation
Indices: 2949793--2950197,3052384--3052790 Loop: 102186 Score: 120
Left Length: 405 Right Length: 407 Average length: 406.0
3 most common centers (desc): 6002581 6002584 6002583
2949783 >> (LF) CACCGACGTC
3052800 << (RF) CGGGGGTGGC
2949793 >> GACCGCAGGCGGGTGGCACTGGCCACCGTCGTCGGTACGGCGGTGGAGTGGTACGACTACTTCGTCTATGCCGCG >> 2949867
3052790 << ***A**-*********ACCGG***A**T*C*GC**G****A***G***********C*A****G****G*C*T*G << 3052717
2949868 >> GCCGCCGGCCTCGTGTTCGGCACGTTGTTCTTCGAACCCGCCGGTCCCG-GCT-TCGGCACCATCCTGTCC---T >> 2949937
3052716 << **C***TG***C******TT**T*C*********G-**T*C-*GT**T*A*T*G***T*C*C******C**CGG* << 3052644
2949938 >> TCCTCACGGTCGGCATCAGCTTCCTGTTCCGGCCGTTGGGGGCCTTCCTCGCCGGGCACTTCGGCGACAAGGTCG >> 2950012
3052643 << **C****GAT**G*C**C*A***CG*CG***G***G****G*CAC*CC*CAA***G***************AT** << 3052569
2950013 >> GCCGCCGCCCGGTGCTGGTCACCAC-GC-TGATCCTGATGGGCACCGCCACCGCCCTGATCGGCTTGCTGCCCAC >> 2950085
3052568 << *C***TTCTT*G*****--**C*ACT**G**G*C**GC*G***C*C**C***AA******C****CG*****C** << 3052496
2950086 >> CTATGAGGCCA--TCGG-TATC-GGCGCACCGCTGCTGCTGGTGCTGCTGCGCGTGC-TGCAGGGCGTCTCGGCC >> 2950155
3052495 << C*-*G-**A**CC*C**G**G*A*****-**T*-**********TG******-**A*T*G*****AA**C***AC << 3052426
2950156 >> GGTGGCGAGTGGGGCGGTGCGGTGCTGATGGCCGTCGAGCAC >> 2950197
3052425 << **G*****T********G*********G***AC*G******* << 3052384
Statistics
Matches: 283 (67.87%), Mismatches: 112 (26.86%), Indels: 22 (5.28%)
ATpairs: 28.98%, CGpairs: 71.02%, GTpairs: 0.00%
:i = 3052462
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 6002557
highcenter: 6002605
testcenter: 6002581
im3: 58.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3073474 center: 6146909 interval size: 40 g: 1
Alignment explanation
Indices: 3073433--3073454,3073455--3073476 Loop: 0 Score: 44
Left Length: 22 Right Length: 22 Average length: 22.0
3 most common centers (desc): 6146909 0 0
3073423 >> (LF) ACCTTCCTGA
3073486 << (RF) AGGGCCTTTG
3073433 >> GCGCTGATCGGCGATCGGTGGA >> 3073454
3073476 << ********************** << 3073455
Statistics
Matches: 22 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 31.82%, CGpairs: 68.18%, GTpairs: 0.00%
:i = 3073474
tupleindex: 1
intervalindex: 2
matches_in_interval: 40.0000
lowcenter: 6146901
highcenter: 6146917
testcenter: 6146909
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3147423 center: 6053484 interval size: 300 g: 3
Alignment explanation
Indices: 2906000--2906173,3147308--3147483 Loop: 241134 Score: 92
Left Length: 174 Right Length: 176 Average length: 175.0
3 most common centers (desc): 6053484 6053481 6053485
2905990 >> (LF) GCGCGGATCG
3147493 << (RF) GGTGGGACCG
2906000 >> CGCCGTTCGACGGTTTCGTGGTGGTGACGCCGGAATACAACGGCGGCATGCCCGGC-GTGCTGAAGAACGCCCTC >> 2906073
3147483 << *****G-*****GG*****G**G**G**G**G**C******GT*T**-*T*****CA*C**********GA*T** << 3147411
2906074 >> GACCACGTGTCG-GCACCGTGGCGCGACAAGGCCGTCGGCTTCGTCTCCTACGGCGT--GCAC-GGCGGGGCCCG >> 2906144
3147410 << ****A-*GTGT*G**G*T******C*G****G*C************TC********CTG**A*G******GAC** << 3147337
2906145 >> TGCCGTCGTGCAACTGCGGACGGTCTGCG >> 2906173
3147336 << C*******T***A*****GC******A** << 3147308
Statistics
Matches: 129 (72.07%), Mismatches: 42 (23.46%), Indels: 8 (4.47%)
ATpairs: 26.36%, CGpairs: 73.64%, GTpairs: 0.00%
:i = 3147423
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6053460
highcenter: 6053508
testcenter: 6053484
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3178928 center: 6125843 interval size: 300 g: 3
Alignment explanation
Indices: 2945999--2946952,3178891--3179862 Loop: 231938 Score: 177
Left Length: 954 Right Length: 972 Average length: 963.0
3 most common centers (desc): 6125861 6125840 6125843
2945989 >> (LF) CCGCCCTCGT
3179872 << (RF) ACCAAGAGTG
2945999 >> GGCCGAGGCCGGAGGCCTTCACGCCGCCGAACG-GG-GTGCGCAGG-TCGCGCACGTTGTTCGAGTTGAGCCAGA >> 2946070
3179862 << ******A******GAA***CAT***T*****C*G**G******C**C*T*-**--**C**TCG*****CA***G* << 3179791
2946071 >> CCATGCCCGCCTCCA-C-CGCCTGCGAGAAGTTGTGCGCGCGCTTGAGGTCGTTGGTCCAGATGTAGGCCGCCAG >> 2946143
3179790 << **GC********AC*A*A***CTG*G**GG*C*TC***-*A*-**G*A****GC******G*G*GGG**TG**** << 3179718
2946144 >> ACCGTATTTCACGCCGTTGGCCAGTTCGAGCGCCTCCTCCTCGGTGTCGAAGGGGGTGATGGCCACGACCGGGCC >> 2946218
3179717 << ******CTCCCA*A*******C*ACCT**A******C**CT*G*T********A***G*GG*TC********T** << 3179643
2946219 >> GAAGATCTCCTCCTGGAAGATCCTGGCGTCGGGCTTGACGTCGGCGAACACGGTGGGG-CGCACGAAGTTGCCGG >> 2946292
3179642 << ***********************CGTA****---***GC*G*GAA***C*AG**G**GA**-***A***T****A << 3179572
2946293 >> TCGGGAACTC--CG-CGG-GCCGGTC--GCCGCCGGCCACCAGC-CG-CGCCTCGCTCTTG-CCGATCTCGATGT >> 2946358
3179571 << *C******T*CA**T*GAA**C**C*GG***T****AC*C**G*A**C*****AG**ATG*C*****C******* << 3179497
2946359 >> ACT-CGGTGACCTTGGCGTAGTGCTCGGGG-TGCACCAGCGCGCCGACCTCGGTGGCCGGATCGTGCGGGTAGCC >> 2946431
3179496 << *CCT*T*-**A***GA****G**C***AA*G**C-**A*********A*TA******CAGC***T******A*** << 3179424
2946432 >> GACCTTCACCCGC-TCGGCCTGGGCGGCGTAGCGCTCGACGAACTCGTCGTAGATCTCGCGCTGCACCAGGATGC >> 2946505
3179423 << *-*ACT*CTAC**G*A**ACG*GA**T**CG***CC*G*A***************CCT*CTC**C*A***--*** << 3179352
2946506 >> G-GCTGCCCGC-GGTGCAGCGTTC-CCC-G-TTGAGGGAGAAGACGCCGAAGA--TGGT-GGC---GTCGATGG- >> 2946570
3179351 << *G**CTCCC**T*******TGG**C***A*C*****G*G***G*AGT*****GGG*G*TG***GAA***G*C*TT << 3179277
2946569 >> CG-G-CGTCGA-GATC--CGCGTCGGCGAACACCACCGCGGGGGACTTGCCGCCCAGCTCCATCG--ACAGGCCT >> 2946636
3179276 << **G*A*****CG*CG*TA*T******CG*CC*TC*ACAA****GA*****************CC*AC**G**CT* << 3179202
2946637 >> TTGAGGTGGGGCGC-GGCGTTG-GCGAAGATGATCTGGCCGGTGCGGCTCTCGCCGGTGAACGAGATCAGCGGCA >> 2946709
3179202 << --**A**AGA-***A*****TGA**-*A***G*C*G********CA*C****T********C*G**G*AAC*G** << 3179131
2946710 >> C-CTCGGGGTGTTTCACCAGCGCGTCGCCCGCCTCCTCGCCGAGGCCGTTGACGAGGTTGAACACGCCCTGCGGC >> 2946783
3179130 << *C*C**T*G*GCT-*C******CG*A**********T******T*********G*G*****C*******C*C*** << 3179057
2946784 >> AGGCCCGCCTCCTCGAAGATGCCCGCCCACAGCGAGGC-CGACAGCGGGGTGAACTCCGCGGGCTTGAGCACCAC >> 2946857
3179056 << **-*TC*--**CC***A**-**A**T*C**GAAG***TA***CCG******GAC***C***************** << 3178986
2946858 >> GGTGTTGCCGGTGGCCAAGGCGGGGGCCAGCTTCCAGCTCTCCAGCATGAACGGGGTGTTCCACGGCGTGATCAG >> 2946932
3178985 << G*G******G*G*****CG*****G************C*CC***A**C**A****TT*********CT*****A* << 3178911
2946933 >> GCCCGCGACGCCGATCGGCT >> 2946952
3178910 << ***CT*G*******C***** << 3178891
Statistics
Matches: 658 (66.13%), Mismatches: 273 (27.44%), Indels: 64 (6.43%)
ATpairs: 29.18%, CGpairs: 70.82%, GTpairs: 0.00%
:i = 3178928
tupleindex: 3
intervalindex: 1
matches_in_interval: 104.0000
lowcenter: 6125819
highcenter: 6125867
testcenter: 6125843
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3184073 center: 5970467 interval size: 300 g: 3
Alignment explanation
Indices: 2786299--2786506,3183964--3184163 Loop: 397457 Score: 206
Left Length: 208 Right Length: 200 Average length: 204.0
3 most common centers (desc): 5970467 5970465 5970470
2786289 >> (LF) CGGCCTGCCC
3184173 << (RF) CAGCCCGGCT
2786299 >> GCCTGAGCGGGTCAGCGCCCGGAGGTGGTAGCGGAGCGTGGCCACGGAGGGCGCCCCGCTC-GG-GCTGATCGGG >> 2786371
3184163 << **********-*--***********G*************AA************AC****C*T**G****-***** << 3184093
2786372 >> CACCGCCTGAGCGGGTCAGCGCCCGGAGGTGGTAGCGGAGCGTGGCCACGGAGGGCGCCCCGCTCGGGCGAGATC >> 2786446
3184092 << *GCT**********-*--***********G*************AA************AC****C*T****GAC** << 3184021
2786447 >> GGGCACCGCCTGAGCGGGTCAGCGCCCGGAGGCGGTAGCGGAGCGTGGCCACGGAGGGCG >> 2786506
3184020 << ****GCT**********-*--*************************AA***A***G**** << 3183964
Statistics
Matches: 172 (81.90%), Mismatches: 26 (12.38%), Indels: 12 (5.71%)
ATpairs: 19.19%, CGpairs: 80.81%, GTpairs: 0.00%
:i = 3184073
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 5970443
highcenter: 5970491
testcenter: 5970467
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3184151 center: 5970542 interval size: 300 g: 3
Alignment explanation
Indices: 2786298--2786538,3184007--3184239 Loop: 397468 Score: 232
Left Length: 241 Right Length: 233 Average length: 237.0
3 most common centers (desc): 5970542 5970545 5970540
2786288 >> (LF) TCGGCCTGCC
3184249 << (RF) CGTTCGTGCC
2786298 >> CGCCTGAGCGGGTCAGCGCCCGGAGGTGGTAGCGGAGCGTGGCCACGGAGGGCGCCCCGCTC-GG-GCTGATCGG >> 2786370
3184239 << ***********-*--***********G*************AA************AC****C*T**G****-**** << 3184169
2786371 >> GCACCGCCTGAGCGGGTCAGCGCCCGGAGGTGGTAGCGGAGCGTGGCCACGGAGGGCGCCCCGCTCGGGCGAGAT >> 2786445
3184168 << **GCT**********-*--***********G*************AA************AC****C*T****GAC* << 3184097
2786446 >> CGGGCACCGCCTGAGCGGGTCAGCGCCCGGAGGCGGTAGCGGAGCGTGGCCACGGAGGGCGCCCCGCTCGGGCGA >> 2786520
3184096 << *****GCT**********-*--*************************AA************AC****C*T****G << 3184025
2786521 >> GATCGGGCACCGCCTGAG >> 2786538
3184024 << AC******GCT******* << 3184007
Statistics
Matches: 197 (81.07%), Mismatches: 34 (13.99%), Indels: 12 (4.94%)
ATpairs: 18.27%, CGpairs: 81.73%, GTpairs: 0.00%
:i = 3184151
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 5970518
highcenter: 5970566
testcenter: 5970542
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3190425 center: 6380134 interval size: 80 g: 2
Alignment explanation
Indices: 3189708--3189757,3190378--3190426 Loop: 620 Score: 44
Left Length: 50 Right Length: 49 Average length: 49.5
3 most common centers (desc): 6380134 6380135 6380133
3189698 >> (LF) GACGTGCTCG
3190436 << (RF) GTAGCGCTGT
3189708 >> GCGTGC-CGGGCGCCGACGCGCGGTGGCGCGAGCC-GCTGCCGCCGCTGCGT >> 3189757
3190426 << ******A*****-******T****-*G****C**CA*****A***-****** << 3190378
Statistics
Matches: 42 (80.77%), Mismatches: 5 (9.62%), Indels: 5 (9.62%)
ATpairs: 11.90%, CGpairs: 88.10%, GTpairs: 0.00%
:i = 3190425
tupleindex: 2
intervalindex: 1
matches_in_interval: 74.0000
lowcenter: 6380122
highcenter: 6380146
testcenter: 6380134
im3: 16.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 3216319 center: 6124604 interval size: 600 g: 3
Alignment explanation
Indices: 2908227--2908814,3215778--3216377 Loop: 306963 Score: 130
Left Length: 588 Right Length: 600 Average length: 594.0
3 most common centers (desc): 6124604 6124592 6124586
2908217 >> (LF) AGACCTCGGC
3216387 << (RF) TACAGTGGGC
2908227 >> CCGCCTGCTCGAACTGCTGTCGTTGCTCCAGCTCGGGCGGGACTGGACCAGTTCCGAACTCGCCGACCGGCTCGC >> 2908301
3216377 << ******G****GC******C*GCGG**C***TG********GC*AGC**C*GCTC**********G********* << 3216303
2908302 >> GGTGAGCACGAGAACTGTGCGCGCCGACATCG-GCAAGCTGCGGTCGCTCGGCTATCCCGTGGACGCGCGC--CC >> 2908373
3216302 << ***G***G**G*G**CG*****GC****C***T**C-******GCT*AT******-****-*AG***T*G*TC** << 3216231
2908374 >> CGGCGTCGCG-GGCGGGTACCGGCTGGCCGCCGGAACGGCGATGCCCCCGCTGCTGCTCGACGACGACGAGGCCG >> 2908447
3216230 << ***-*G**C*G***ATG********G*****C**G***T*GC*G*AC*********A****C************G << 3216157
2908448 >> TCGCCGTCGCGG-TCGGACTGGGC--GCGGTCG-CGACC--CAACG-G--CTCGGACT-CGAGGA-GACATCGCT >> 2908511
3216156 << ****-*T*G*A*G****G****G*GA**A****C*G***CC*****G*CC*C***C*TC*GAG**G***CGC**- << 3216084
2908512 >> CACC-GCGC-T-CGCGAAGCTGGAGCAGGTGCTGCCCGCGCGCCTGCGGCGACGCGTC-CAGGCG-GTACGCGAG >> 2908581
3216083 << ****G****G*T**CG***C*G**G***A*G******TTT********G*GG****G*C*G*G*GA*GC****C* << 3216009
2908583 >> --TCGA--CCAGCGTCGTTCCCGGAGCTG-TGCCGCCGCT-CGATCCCTCGGTTCTCGGCGCGGTCGCCGCCGCG >> 2908650
3216008 << GG****TT**C***G*G*GC***GGG*G*C***C*T***CC***-*******GC*G*A*-**G*T****TA*-*- << 3215938
2908651 >> ACCCGGCGCCACGAACGGCTCCGGTTCCGA-TACACGAAGC-CCGGGGGCGCCGAAG-CTGCCCGCCACATCGAA >> 2908722
3215937 << ***T*-*T**CA*ACCA*T-**--***-**C*****GC-**C***T******-*AG*A*C*******C*C****C << 3215870
2908723 >> CCGCAACGGCTGGTG-ACCTGGGGGCCGCTGTGGTATCTGCTCGCGTGGGATCTCGACCGGTGCGACTGGCGAGT >> 2908796
3215869 << *****G**G*T*T*GG*****G*G-*A**CG*****G*****C**G*****GTG******GG**********C** << 3215796
2908797 >> CTTTCGCGTCGACCGCAT >> 2908814
3215795 << ***G***TG********* << 3215778
Statistics
Matches: 416 (67.31%), Mismatches: 154 (24.92%), Indels: 48 (7.77%)
ATpairs: 20.67%, CGpairs: 79.33%, GTpairs: 0.00%
:i = 3216319
tupleindex: 3
intervalindex: 2
matches_in_interval: 218.0000
lowcenter: 6124570
highcenter: 6124638
testcenter: 6124604
im3: 48.0000
frequent_center_ratio*rnkp: 41.4200
Found at i: 3230080 center: 6174232 interval size: 300 g: 3
Alignment explanation
Indices: 2943944--2944398,3229834--3230287 Loop: 285435 Score: 105
Left Length: 455 Right Length: 454 Average length: 454.5
3 most common centers (desc): 6174232 6174233 6174230
2943934 >> (LF) ACGGTCCGTA
3230297 << (RF) GGGCGACTAG
2943944 >> GTCGGCGAGCACGGTGTCACCCGGCTCGACCCACATGGGGCGGGTGAAGGAGCCGGCCAGCACGATCTCCCCGGC >> 2944018
3230287 << ****G*-*G*****G***G******C*G***CCCAT**G******G*AG**A**G*C***A**G*GC*C*****C << 3230214
2944019 >> CTCGAGCCGGTCGCCGTGCTGGTGCAGCTTGTTCGCCAGCCACGCCACCCCGGTGGCCGGATG-GTTGAGCACCG >> 2944092
3230213 << A******CAGT*G***T**C**GGC*G*C****C*********T*C*CCC**A**TC***-**T*GGG*****C* << 3230140
2944093 >> CGGCGGCGACACCGGACTCCTCGATGGTCTC-GTTGCGGT--AGAGCAACGCCGAGACCCAGC-GCAGATCGACC >> 2944163
3230139 << **G**G*GC*C****ACC*CCA**-*G**C*G****TA**CG**C**CGT******-*--***G*******G*C* << 3230069
2944164 >> TCGCCGGGCCGCACCGGGTTGCCGCCGTAGACCAGCCCGGCGAACGCGGCGTTGTCGCTGATGGTGTCGACGATG >> 2944238
3230068 << **GC**T*AC*******GGC**A***GTC**A**G****G**C*C*T**********CG***********T**** << 3229994
2944239 >> GTGCGTCCGGCCAG-C-TCGATGCGCGAGGACAGGATCTCCAGCGCGGGCACCACGTACTCGGTGGCGCGCAGGA >> 2944311
3229993 << GG*T-*C**-****A*G*A***G**C***AGC*G******C**********C****T*T***TGG**G***CGGC << 3229921
2944312 >> CGTCGAACACCGTCACGTCCGGGCCGGTCAACGGCTCGGCG-AGGACGAAGGCGAGCTCCACCTCGATGCGCACG >> 2944385
3229920 << *G***CG*C*C*****GG*C**********C***C-****GG**G********G*GA**CCCA********CC-* << 3229848
2944386 >> TTGGAG-AACTGCC >> 2944398
3229847 << ***G**C***G*** << 3229834
Statistics
Matches: 307 (66.16%), Mismatches: 138 (29.74%), Indels: 19 (4.09%)
ATpairs: 28.01%, CGpairs: 71.99%, GTpairs: 0.00%
:i = 3230080
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6174208
highcenter: 6174256
testcenter: 6174232
im3: 72.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3238480 center: 6185341 interval size: 300 g: 3
Alignment explanation
Indices: 2945962--2947228,3238113--3239391 Loop: 290884 Score: 264
Left Length: 1267 Right Length: 1279 Average length: 1273.0
3 most common centers (desc): 6185344 6185341 6185353
2945952 >> (LF) GGCCTGCTGG
3239401 << (RF) GCGCGCCCCA
2945962 >> TCGGTGTAGAAGTCGATGGAGCGGTAGCCGCCCTCGTGGCCGAGGCCGGAGGCCTTCACGCCGCCGAACGGGGTG >> 2946036
3239391 << ******T****G***GC****ATG*CA*****A***G******G****GA***CGG*A**********-***GT* << 3239318
2946037 >> C-GCAGGTCGCGCACGTTGTTCGAGTTGAGCCAGACCATGCCCGCCT-CCACCGC-CTGCGAGAAGTTGTGCGCG >> 2946108
3239317 << *G**********AA**TT*TTCG******A*******C********GC***C***C*C**G*AGG*C**C***** << 3239243
2946109 >> CGCTTGAGGTCGTTGGTCCAGATGTAGGCCG-CCAGACCGTATTTCACGCCGTTGGCCAGTTCG-AGCGCCTCCT >> 2946181
3239243 << -*-*G*****AG*CA**CT*G*-*G*AA***C****C*****CCC*CT*A*******C*-*C**G*****A**C* << 3239172
2946182 >> CCTCGGTGTCGAAGGGGGTGATGGCCACGACCGGGCCGAAGATCTCCTCCTGGAAGATCCTGGCGTCGGGCTTGA >> 2946256
3239171 << *A************GG*TCG*G**A*A***********************G**CG*C*C*C**T****AACC*** << 3239097
2946257 >> CGTCGGCGAACACGGTGGGGCGCAC-GAAGTTGCCGGTCGGGAACTCCG--C-GG---GCCGGTCGCCGCCGGC- >> 2946325
3239096 << C*G***A**AC*A***G**-**C*AT*A***C***G*G**G*ACC**C*CT*G**AGT****GC*********AC << 3239023
2946325 >> -C-ACCA-GCCGCGCCTCGCTCTTGCCGATCTCGATGTACTCGGTG-ACCTTGGCGTAG-TGCTCGGGGTGC-AC >> 2946392
3239022 << T*C***AA***T*-*****AG**C*C***CA****G***CG**-**G******A**-**T**C-****G*A*C*A << 3238952
2946393 >> CAGCGCGCCGACCTCGGTGGCCGGATCGTGCGGGTAGCCGACCTTCACCC-GCTCGGCCTGGGCGGCGTAGCGCT >> 2946466
3238951 << C****CT**G*CCTT***G**C**C**G*AC**T*G***G***C*C*C*AA*A***-***GGA***A*T*G**CC << 3238878
2946467 >> CGACGAACTCGTCGTAGAT-CTCGCGCTGCACCAGGATGCG-GCTGCCCGCGGTGCAGCGTTCCCCGTTGAGGGA >> 2946539
3238877 << *G*C*********GTA***C**-*A**********G*CG**G*T*-**C**GTC***GTGG*CA******GG*GG << 3238805
2946540 >> GAAGACGCCGAAGATGGTGG-CGTCGATGGCGGCGTCGAGATCCGCGTCGGCGAACACCACCGCGGGGGACTTGC >> 2946613
3238804 << *****A*C**GC***G*GGTA**C*-*G***GT*T********C***********C**C*ACAAG*G******** << 3238731
2946614 >> CGCCCAGCTCCATCGACAGGCCTTTGAGGTGGGGCGCGGC-GTTGGCGAAGATGATCTGGCCGGTGCG-GCTCTC >> 2946686
3238730 << *******A**CCG***C*GGCCCC**A***A**G******G*G*A*-**C***GA**TGG*****-**G***CCT << 3238658
2946687 >> GCCGGTGAACGAGATCAGCGG-CACCTCG-GGGT-GTT--TCACCAGCGCGTCGCCCGCCTCCTCGCCGAGGCCG >> 2946756
3238657 << G********C*A***--****A*CT*C**G****G*CTCC***C*C**G**C*GT*******CG******TT*** << 3238585
2946757 >> TTGACGAGGTTGAACACGCCCTGCGGCAGGCCCGCCTCCT-CGAAGATGCCCGCCCACAGCGAGGC-CGAC-AGC >> 2946828
3238584 << *CG****G*****CC*******GC***************TC**G-**-**AC*C*C*-****CA**C**CAC*** << 3238513
2946829 >> GGGGTGAACTCCGCGGGCTTGAGCACCACGGTGTTGCCGGTGGCCAAGGCGGGGGCCAGCTTCCAGCTCTCCAGC >> 2946903
3238512 << *****GAC*CCC**************CC***********TTA***********G**C*A*******C**C***** << 3238438
2946904 >> ATGAACGGGGTGTTCCACGGCGTGATCAGGCCCGCGACGCCGATCGGCTTGCGGTT-GA-C--GTAGTTGATCTG >> 2946974
3238437 << **G*C***G*G*********CG*****-*-**-*T***GT**GG**-*CC****T*T**C*TG****CT**T*T* << 3238367
2946975 >> GCGGCCGGGCACCTTGTAGGTGTCGTCGGACTG---GGCCACGATCAGGTCGGCGAAGAACCGGAAGTTCTCCGC >> 2947046
3238366 << *AG*****-*CCC--*****GG****A**G*CGGTA***CC**-*T*--**************G*CT**C*CA** << 3238298
2947047 >> GGCGCGGCGGGCCT--GGCCCAGCG--CCTGGGTGATGGGCAGCCCGGAGTCGAAGCTCTCCAGTTCGGCCAGC- >> 2947118
3238297 << GT****-****TA*AG***TAC***CC******T*****A*AAC***GG****GC*C****C**G*****C**AA << 3238224
2947117 >> CGG-GCGTCGCGCGACTCGACCAGATCGGCGATGCGGTGCAGGACCCGGGAACGCTCGCGCGGCAGC-AGCTTCG >> 2947189
3238223 << **AG***CA*C***--******CGC*******G*CG***C****A*CG**GG*****-*AA**C***C***GC** << 3238152
2947190 >> GCCACGGGCCCTCGGTGAAGGCCTTGCGGGCGGCGGCGA >> 2947228
3238151 << ****C**A******AG******CC*T**********A** << 3238113
Statistics
Matches: 874 (66.51%), Mismatches: 358 (27.25%), Indels: 82 (6.24%)
ATpairs: 27.23%, CGpairs: 72.77%, GTpairs: 0.00%
:i = 3238480
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 6185317
highcenter: 6185365
testcenter: 6185341
im3: 55.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3266591 center: 6532610 interval size: 160 g: 2
Alignment explanation
Indices: 3266019--3266064,3266546--3266591 Loop: 481 Score: 42
Left Length: 46 Right Length: 46 Average length: 46.0
3 most common centers (desc): 6532610 0 0
3266009 >> (LF) CCGGAAGCAG
3266601 << (RF) GCGACGTCCT
3266019 >> CGCGTAGAAGGCGATGGGCGCCACGCCGACCCAGAACCCGGTGGTG >> 3266064
3266591 << *****A*CG*******GA*******C*****CG**G*C******** << 3266546
Statistics
Matches: 36 (78.26%), Mismatches: 10 (21.74%), Indels: 0 (0.00%)
ATpairs: 22.22%, CGpairs: 77.78%, GTpairs: 0.00%
:i = 3266591
tupleindex: 2
intervalindex: 2
matches_in_interval: 102.0000
lowcenter: 6532592
highcenter: 6532628
testcenter: 6532610
im3: 32.0000
frequent_center_ratio*rnkp: 21.3900
Found at i: 3267158 center: 6188674 interval size: 300 g: 3
Alignment explanation
Indices: 2921509--2921732,3266942--3267165 Loop: 345209 Score: 105
Left Length: 224 Right Length: 224 Average length: 224.0
3 most common centers (desc): 6188674 6188673 6188675
2921499 >> (LF) TTGCCGCACG
3267175 << (RF) ATAGGCGCCG
2921509 >> AGCTCTCCGGCGGTATGCAGCAGCGGGTTTCGCTGTGC-CGGGCCCT-GCTGCACGAACCGGAAGTGCTGCTGAT >> 2921581
3267165 << **************GT************CCC*C**-**C*****C**G**G**C-**A***GGC*********** << 3267093
2921582 >> GGATGAGCCGTTCGGCGCGCTCGACGCGCTCACCAGGGAGCG-GATGAACGTCGAACTGCATCGAAT-CTGGCGG >> 2921654
3267092 << ***G**T************C****AG**T*****G*G*-***G*G**G*C*T********AC**CA*C*TT**G* << 3267019
2921655 >> GAAACGGGCACCACCGTGCTGCTGGTCACCCATTCGGTGGCCGAGGCCGTCTACCTGGCCAATCGGGTCGTGGTG >> 2921729
3267019 << -**GA*****TC***T*GC**A*G********GCTAA*G*C*********CT*C**G*CAC*G***T***G**** << 3266945
2921730 >> ATG >> 2921732
3266944 << G** << 3266942
Statistics
Matches: 161 (70.61%), Mismatches: 59 (25.88%), Indels: 8 (3.51%)
ATpairs: 29.81%, CGpairs: 70.19%, GTpairs: 0.00%
:i = 3267158
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 6188650
highcenter: 6188698
testcenter: 6188674
im3: 70.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3287772 center: 6571550 interval size: 300 g: 3
Alignment explanation
Indices: 3283635--3283992,3287558--3287915 Loop: 3565 Score: 115
Left Length: 358 Right Length: 358 Average length: 358.0
3 most common centers (desc): 6571550 6571551 6571548
3283625 >> (LF) ACGGCGTTGG
3287925 << (RF) CGGCGGGGGT
3283635 >> TCGCACTCCACACCGCCAACGCGCGCGCCCGCGCCCGCCCT-TCGGTGAAGGTGGTGGTGAGCGTGGCCAGCGTC >> 3283708
3287915 << ****C*********G*C**C*****TACA*****C-**CCCC********G**G*G**GG***TCG******ACC << 3287842
3283709 >> GCGGGCGCGATGGCGGCCGCCGCCACG-CCCTGCACGGCGCGCGCCGCCACCAG--CTGCCACGGTGCCTGCGCG >> 3283780
3287841 << *****CTAG*GGT*******-***CT*T*****A*C***G**C**C**C*AC**TT*G***CCA*****-*-*** << 3287770
3283781 >> AATCCA-CCGGCCGCCGAGGCTGCTCCGAACACCATCAAACC-CACGACGAACACCCGCCGCCTGCCCACCAGAT >> 3283853
3287769 << *****CC**T**-**C*****G**CCA******CCGC*CC**C*G**-**********C***CCA**C*C***C* << 3287697
3283854 >> CGCAGGCCCGGCCCCCGAGCAGCAGGAATCCACCGAAGGTGAGCGCGTAGACATGCACCACCCAGGACAGATCCA >> 3283928
3287696 << **CG***C**G**C**********A***G**C*******GG*T*TC****C*C*ACCA*******GG***AG**C << 3287622
3283929 >> CCGGCG-CGAACCCGAGGTCGGCGCGGATCGC-GGGCAGCGCGACGTTCATGACGACCATGTCCAG >> 3283992
3287621 << **A-**A***C*********G*A**G***-**A*********G*******CG***CACC******* << 3287558
Statistics
Matches: 249 (68.03%), Mismatches: 101 (27.60%), Indels: 16 (4.37%)
ATpairs: 24.50%, CGpairs: 75.50%, GTpairs: 0.00%
:i = 3287772
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6571526
highcenter: 6571574
testcenter: 6571550
im3: 74.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3289610 center: 6443966 interval size: 300 g: 3
Alignment explanation
Indices: 3154356--3154375,3289591--3289610 Loop: 135215 Score: 40
Left Length: 20 Right Length: 20 Average length: 20.0
3 most common centers (desc): 6443966 0 0
3154346 >> (LF) AGCCACGGGC
3289620 << (RF) CTATGTCGCA
3154356 >> CCACCACGTCCACGGCGGCG >> 3154375
3289610 << ******************** << 3289591
Statistics
Matches: 20 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 20.00%, CGpairs: 80.00%, GTpairs: 0.00%
:i = 3289610
tupleindex: 3
intervalindex: 1
matches_in_interval: 113.0000
lowcenter: 6443942
highcenter: 6443990
testcenter: 6443966
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3297089 center: 6594082 interval size: 40 g: 1
Alignment explanation
Indices: 3296993--3297038,3297044--3297089 Loop: 5 Score: 45
Left Length: 46 Right Length: 46 Average length: 46.0
3 most common centers (desc): 6594082 6594081 0
3296983 >> (LF) CAAGACCCGC
3297099 << (RF) TGGCGTTCCA
3296993 >> CGCC-GCGGCTGAGACGTCGCACCACGAGAAAAGGCCGTTTCCCTCG >> 3297038
3297089 << ****T**G*****GG**GC**CC****-******************* << 3297044
Statistics
Matches: 38 (80.85%), Mismatches: 7 (14.89%), Indels: 2 (4.26%)
ATpairs: 28.95%, CGpairs: 71.05%, GTpairs: 0.00%
:i = 3297089
tupleindex: 1
intervalindex: 2
matches_in_interval: 40.0000
lowcenter: 6594074
highcenter: 6594090
testcenter: 6594082
im3: 17.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3299952 center: 6280981 interval size: 300 g: 3
Alignment explanation
Indices: 2976261--2981143,3299841--3304790 Loop: 318697 Score: 965
Left Length: 4883 Right Length: 4950 Average length: 4916.5
3 most common centers (desc): 6280963 6280981 6281029
2976251 >> (LF) AGAACAGCGG
3304800 << (RF) CAGTGGCCGG
2976261 >> CCGTGGC-GCGGAACCACGCACCCT-GCCCGGCATCCTCGCCGCCTCCGCCGCGGCAGCG-CCCGACGCG-ATCG >> 2976331
3304790 << ***T***G**G*GC**C*****C**G**C*T*A*-*A********T***AC**G-*-***T*****CG**G*G** << 3304719
2976332 >> CCGTG--CGCTGT-GCCGACG--AG-GCGCTGACCTACCGGGAACTCGACGAGCGGTCCGACCGGCTGGCCCG-G >> 2976399
3304718 << *C***CA***G**G*CC****CG*GG*******C******G**A******GC***GC*CT*****A****C**A* << 3304644
2976400 >> CTCCTGCTGGCGCGCACGGC-CGGACACGATCGTGTC-G--TCGCGATCGCGCTGCCGCGTTCGCTCGCCGCCGT >> 2976470
3304643 << *C*-**T*G**G***C-*A*A***AC-**C--***T*G*CT*****G***C****T*G**G***T***TAA**** << 3304574
2976471 >> CACCGCCGTGTGGGCGGTGGCCAAGGCCGGAGCGGCGTTCCTGCCGATCGACCCCAGCCTGCCCG-CCGAGCGAA >> 2976544
3304573 << CGA*T***GGGAG**G**G******T****G**G**G***C*G***C*******C*TC-*T****C*******CC << 3304500
2976545 >> TCGCGTTCC-TGCTGTCCGATTCCGGCGCCGCGCTCGCCGTCACCGACAGCGCCGCCGCT-GCCG--CGG-T-GC >> 2976613
3304499 << *-***CGT*T****GT****G******TC***G****CAG*****--*C*-****T-**TG****TT***G*G** << 3304430
2976614 >> CCGCGGCGG-TCG-CGAC--G-CTGGTGCTCGACGACGAGGACA-CC-CGCCGCGC-CGTCGAATCCGT-GCC-- >> 2976679
3304429 << **G**G**GG***T**G*GA*C**************AGG**G*AA**C*****T**A**T**CG*T*TGG***CT << 3304355
2976678 >> CGCGGGGCGGGTCACCGATGCCGAGCGCGGCGGTCCGGTGCGTCTCGACGACGTCGCGTACCTGATCTACACCTC >> 2976752
3304354 << *G*GGA***G*G*CT***-*****G*-****GGC***G-*-***T*--***AG*C**G******C********** << 3304286
2976753 >> CGGCTCCACGGGGACGCCGAAGGGCGTGCTCG-TCACACATCGT-GGACTCGCGGATCTGGTCGCCG-CGCAACA >> 2976824
3304285 << C*****C**G*****T***********-*C**C****G**-**GG**G**CA**T*-**--******T**-***A << 3304217
2976825 >> TCGC--CTG-CTCGGCGTCGACCG-GAA-CGCGGCGGTGTTGCAGGTCGCCGCGCCGAGTTTCGACGCCTCGGTC >> 2976894
3304216 << C***CT*G*C****T*TG*TG**GG**AA****-*TGGG*-***AA*****T*G*****G********CC**T*C << 3304144
2976895 >> TTCGAGCTGCTGCTGGCGCACGGGGCGGGCGC-ACG--GCTGATCGTCGCACCGCCGCAGGTGTACGGCGGGCCC >> 2976966
3304143 << G*C**A***********G*A***TG*G*****G**GTA*C*****-*-**-*****GC*************GCT* << 3304072
2976967 >> CAACTGGCCGATCTGATCC-GCGGCGAGCACGTGACGCACGCGGTGGTGACCCCCTCGGCGCTGGCGACCGTC-- >> 2977040
3304071 << C****G*****T***G*CCT****-**T*CCT*G********GA*GT*G*****CC*G************T**CT << 3303998
2977039 >> CCGGC--CGACGGGCTC-GACGAAC-TGCGGGTGCTGGCGA-CGGCCGGGGAGGCGGTCGGGGTGGAACTGGTCG >> 2977108
3303997 << *****TC**CA****C*A*G**G**G****G*CT***TA*CA****-**A******G****TGGG********-* << 3303925
2977109 >> AGCGG-TGGGCGCCCGGCCGCAGGATGGTCAATCTCTACGGTCCCAGCGAATCCACCATCTGGGCCACC--GCAG >> 2977180
3303924 << *G*G*G*****GCT******AG*GG**G****GCG******T****G***CT****C***CA*******GA*AG* << 3303850
2977181 >> GCGAC-CTGCGCCC-CGGCGCGCCGATCACGATCGGCGGCCCGGTCGGACCGGTGGCGG-CGGTCGTGCTCGAC- >> 2977253
3303849 << ***G*C***-**CCA*****CG********G******TG**A***CG*-*C**CG****C*G**C*********C << 3303777
2977252 >> ACCTGGCTGCGGCCTGCGCCGATCGGTGTCGTGGGTGAGCTGTACCTGTTCGGCGCCGGG-GTCGCGGCCGGCTA >> 2977325
3303776 << *C*-*******A**C*A****C****G***GGG**G*****G*****GC-***C******G**C***GTC***** << 3303704
2977326 >> CGCGGGCAGGCGCGGGCTGACCGCGGCCCGATTCGTGGCCTGCCCGTTCGA-CGGC--GGC-CGC--ATGTACCG >> 2977394
3303703 << *GA**T*G**AT*********C*****C**G*****G***CTA**A****CA*G**GG**CC***CC******** << 3303629
2977395 >> CACCGGCGACCTGGTCCGGCGCAACCG-GGACGGCGCCCTCGAATTCGTGGGGCGCAACGATTTCCAGGTGAAGA >> 2977468
3303628 << ******A***C****C**GA*C*-*C*G****G***TT**C*AC*T*G****G****C***G************* << 3303555
2977469 >> TCCGCGGCACCCGCGTGGAGCTGGGCGAGATCGATGCGGCCCTGGCGGCGCAGGACGCGGTGGCG-TTCGCGGTG >> 2977542
3303554 << *C*****CAA****T*G*****G*********TCG**G**T**GT*G**G**GGG**TGT*G-**G*****GGTA << 3303481
2977543 >> ACGGTCCCGCGCCGGATCGGCGGGGGAGCGGTGGTGCCGGTGTCGTACGTGGTGCCCGCGGCGGGTGCCGC-CGT >> 2977616
3303480 << **G*TCCA****CG****TT***A*G--**TGG*-**A***G**G*****GGT*C**T*G*TA*G-**TG*A**T << 3303410
2977617 >> CTCCGGGACGGAGCTGCGCGGGGCGCTGGCCGACGAGCTCCCCGCCTACATGGTCCCGGCG-GCGGTCGTGGTGC >> 2977690
3303409 << *TA**GGC***A**-****GGT-*-**G**C*G*GC***C*****CG*******C**G***T**T-**TGG**** << 3303339
2977691 >> TCGACGAGGTGCCGCTGACGGCCAACGGCAAGCTCGACCGGGACGCGCTGCCCGAACCCGCCTTCGCCG-CACGG >> 2977764
3303338 << *C***GC*T*G********GG*CCA*****************G***G*************TCGTC****C*C*** << 3303264
2977766 >> --GAATACCGGGC-CCCGTCGACGTGGTCGGAAGCGGC-GGTCGCGGCCGCGTTCGCGGAGGTGCTCGGCCTCGA >> 2977835
3303263 << GG**CCCT**G**T****T-***GCG*T*G***-****A*******GCC*A*T*C*CG***G******T*C**** << 3303191
2977836 >> CCGGGTGGGCGCCGACGACGACTTCTTCGCCCTCGGCGGTGACTCCCTGAGTGCCGCGTCGG-TGGCGGCGCGCA >> 2977909
3303190 << CCTA***G*C*******G***A*********T*******GT****C***G-**C**TGG*T*G***AG******G << 3303117
2977910 >> TCGGCGCGGCGAT-GA-ACACGACCGTGCCGGTACG-GGCGGTGTTCGACTTCCCGACCGTGGCCGCCCTGGCCA >> 2977981
3303116 << *C*G***G**G*GG*CG**G**-**AG*T-***G**G****-*****TG*GTA*****C**G*****C******C << 3303045
2977982 >> C-GCAC-GC-CGCGTCG--CTGG-GCGGCGGGC-AGCGGGTCGC-GCTGACCGCGGTGGCC-CGCCCGGAGCGGC >> 2978047
3303044 << *G**G*A*CT**-****AT*G**G**G**G*T*C*T**GG-***T**G***-*TTTG*T**T*****G**G*TGC << 3302973
2978048 >> TGCCGTTGTCGCTGGCCCAACAGC-GGATGTGGTTCCTGAACCGGTTCGA-GC---CGG-----ACT-CG---G- >> 2978109
3302972 << ****TG*****CG***C**C*-**T**G**********GC********T*G**CCC***GCCGC**CC**TGG*C << 3302899
2978109 >> -C-G-G--C-C-TACAACGTCCCGGTGCTGCTGCGGCTGTCGGGCCGATTGGATCCCGCCGCGCTGGCGGCCGCC >> 2978175
3302898 << T*G*G*CC*C*G********C**GT*GC*******T***GTG**T**CG*G**T*ACG*********AT**C*** << 3302824
2978176 >> CTACGGGATGTGATG-GCTCGGCACGAGGTGTTGCGCACCGTCTATCCCGAGACCGACGGGGAACCGCG-GCAGG >> 2978248
3302823 << **C*TG**C***GT*G**-**G*********G*******C**C**G**C***GCC*****G*****-**G***** << 3302751
2978249 >> TGATCCTCGA-CGAACC--GGA-GA--TCGCCCTGGA-ATCG-----GTG-C-GCGTCG-ATCCGGCCGCC---G >> 2978305
3302750 << **C*C*****A*GGC**TG**GG*GGC**T****GA*G*G**GGTGG***T*G*T*C**C*CCA*******TGG* << 3302676
2978306 >> TC-GAGGACACGAT-CGG-CGAGTTCG-TG-CGCCGCGGCTTCGACG-TGACCACG-CGG-G-T-ACCGCTGCGG >> 2978370
3302675 << **G*G**CAA**GGC***C**CT****T*GA*********GG**G**G**GCCC**C**GA*T*G****AG**G* << 3302601
2978371 >> GTC-GGCCT-CTTCGA-ACTCGCGGGCACG---ACCG--GA-GAGTTCCTGCTGGCGCTGGTGGTGCACCACATC >> 2978436
3302600 << TG*G**T*CT*G***CG**-***GTG*G**CGG****GG**G***TT*C*G**G*AG*****G************ << 3302527
2978437 >> GCGGGGGACGGCCGGTCGATGGGCCCGCTGGCGCG-CGACGTGATGACCGCCTACGCCGCC-CGGACGGCCGGAC >> 2978509
3302526 << **GTAG******A*****G***TT********-**A***C**GCG*C********GC****C*G*-********* << 3302454
2978510 >> AGGCGC-CGGCCTGGGCGCCGCTGCCGGTGCAGTACGCCGACTACGCCCTGTGGCAGCGCGCGGTGCTCGGCACG >> 2978583
3302453 << CG*T*TA**TC***GG**TTG*C*T-*G*************A***T*C*************T*TG*********G << 3302380
2978584 >> GCCGAGGATCCCGGGTCGCTGATGT-CGGCGCAACTGGCGTTCTGGC-GCGCCACCCTCGCGGGCGCGCCCG-AC >> 2978655
3302379 << *TC**G**G*****G***C**G**TT*T*-***C**G*TG*T****CA****C-*C**C*TG***T-*****C*T << 3302308
2978656 >> CGCCTCGAGCTGCCCACCGACCGGCCCCGCCCGCCGGTGGCGTCGCTGTCGGGCGCGCGGAT-GCCGGTCGAGAT >> 2978729
3302307 << *AC**C*GGC*A***C*******G**C********G*G*G****-**TG****-***-*G*GG*A***CA*G-*G << 3302237
2978730 >> CGGCGCCGACCTGCACGCAC-GCCTGCTGGAACTGGCC-CGGTCGCACGGCACCTC-GC-TGTTCATGGTGCTGC >> 2978800
3302236 << **A**T**-***A***G***G*CCTT**TG*C*CG*ACC***G*T***TGT**C**T**T********G****** << 3302163
2978801 >> ACGCGGCACTGGCGGTGGTGCTCGCACGCGCC-AGCGGCAGCGACGACGTCGTGATCGGCACCCCGGTCGCGGGC >> 2978874
3302162 << ****G**C**G******G****-****GC*TAC*G*****G*******T**TGGC********C*G**C**G**C << 3302089
2978875 >> CGCGGCGAACCGGGCCTCGACGAGC-TGGTCGGCATGTTCGTCAACACCCTGGCGCTGCGCACGCCGC-TCGACG >> 2978947
3302088 << ******G*A****GC**C***G-**T**T*******************C****A*A*******-****T*****G << 3302016
2978948 >> GCGGTGAGCCGTTCGCGGACCTGCT-CGCCCGCGCCCGCGAGACGGATCTGCG-CGCCTTCGAGCACGCGGACGT >> 2979020
3302015 << G**TG*GGCC******G********C***T*-**A*********G**G**-**T********GG*****G***** << 3301943
2979021 >> GCCGTTCGAACGCGTCGTCGAGGATCTGAACCCGGACCGCTCGGCCCCGCACCATCCGGTGTTCCAGGTGATGCT >> 2979095
3301942 << *********C**CG*C*******AC**G**A****GT******GTCC*T**A**G***G**************** << 3301868
2979096 >> GGCCTGGCAG-AACCTGGCCGACACCCAGG-TGAGCCTGCC-GGA-TGTGCAG-GTGTCCCTGGCCGAGGCCGAC >> 2979165
3301867 << GA*C-*A*G*G****T*-***CAC*C*CA*G**CTT*****G**CG**G***AG*T****CT**T*-*A-*-*** << 3301798
2979166 >> ACCGGGATCTCCCAGTTCGACCTGCAATGGGTCG-TATCGGATTCCTATGGGAAAGGAG-GTGTGGCAGAGGGCA >> 2979238
3301797 << *****G***C*CT*************C*AGT-**G*GT*G**T**CG*GTGGGG-*GA*G*G*TTG*G**G**C* << 3301725
2979239 >> TTTCCGGAATGCTCATGTATGCGCGT-GAGCTGTTCGACCCGG-CAACGGTGGCGGGATTCGGACGA-CGGCTGG >> 2979310
3301724 << *GC***AGCG*C*C*GG*****-**GG**G*********CT**T**G**GGG***G*G*-***-*T*C******G << 3301653
2979311 >> TGCGAG-TGCTGGAAGCGGTCGCCGACGATCCGTCG-GTCTCGGTCGGGGAAAT-CGACTGGCTGGACGCGGACG >> 2979382
3301653 << -**TC*G****G*GG***T******G*T*G***T*GT**C-*******G**AG*C*T****-**G***G***G** << 3301581
2979383 >> AGCGCTCGCACCTGCTCGCGC-GCACCGGCGCAACACCCGCGCCGACGGTGCTGCTGCCG-GAGGTGTTCGACGC >> 2979455
3301580 << *TA*C**GCC****CGC***CA**C*-*****GCTCC***TG*C*G****-*TG**A**GG***********C** << 3301508
2979456 >> GGCGGTGC-GCAGCG-CAGGCGCGGGTGTCGCCGT-CG-TGTCCGGGCAGACGCGGCTGACCTACGCCGAACTCG >> 2979526
3301507 << ********T***-**T*G****C*G*-*****CG*C**G**GCT*****G-**T**-*G*******T**GC**** << 3301437
2979527 >> ACGAACGGTCGAATCGGCTGGCGCGCCACCTGATCCGGCGCGGCGCCGGACCCGAGCGCACCGTGTTG-GTTGCG >> 2979600
3301436 << **GCGA**T*G**G***********CCAC******CT**T*****A***G**C***T**-*A*-**G*G*G**C* << 3301364
2979601 >> GTGG-CGCGCTCGGTGGAGTCGGTGGTGGCG-TGGTGGGCCGTGGTGAAGACCGGCGCGGCCTATGTCCCGGTCG >> 2979673
3301363 << G*AGT*G**C********T*******GG***C**G***-*C****GG**************C*AG**C***T*** << 3301290
2979674 >> ACCCCGGGTATCCCGCGG-GCAGGATCGAGCAGATGGTGACGGATTCCGGCGCGACGCTGGGGCTGACCGTGGCC >> 2979747
3301289 << *A**CGAG**G**C**G*T**-******GG**G***A*GC*G********A***CAG********G**-**A*T- << 3301218
2979748 >> GCGGTGCGCGACCGGTTGCC-CGCTGCC-GTCGAGTGGGTCGTGCTCGATGCCGACGCCCGTGCCGACGACACCG >> 2979820
3301217 << ***G--*-*-****-*-***T*G*****G******-**--**C*-*C***G*A*AA*CT**TG***CT*AA-*** << 3301154
2979821 >> CCGCGCGGCTCGCGGCGCTGCCGGGC-GGC-CGGATCGGCGACGCCGAACGG-CTGCGCCCGCTGCGGCCGGCGA >> 2979892
3301153 << C-**A***C*-**A*-**G****G**G**TT*G****TG*G*C*****C**GT*G*****-********A**T** << 3301083
2979893 >> ACACCGCGTACGTCGTCTTCACCTCCGGCTCCACCGGCGTGCCGAAAGGTGTCGCGGTCACCCACGCGGGCATCG >> 2979967
3301082 << **G*C**G**A***T***T******C**A**C******TGG*****C**G**C*A***********CG***G*CA << 3301008
2979968 >> CCGATTTCCTGGCCG-G-GCAGCGC-G-GATACGGCGTCGGCCCCGATTCG-C-GGGTGCTGCACTTCGCCTCCC >> 2980036
3301007 << **T*G***CGG****T*A**-****T*G*A*A**T***CG****-**G-**T*G********T*******CT*C* << 3300936
2980037 >> CGTCCTTCGACGCCTCGCTGCTCGAGATCCTGTTGGCGGTCGGGGGCGCAGCGGCGCTGGTGATCGCGCCCACCG >> 2980111
3300935 << **TC******A***C**T*******GG*C*****G**GG****G*****C**GT****G**G*****G**C**** << 3300861
2980112 >> AGCTGTACGGGGGTACGGAACTGG-GCGAGTTCCTGCGGACGCAGCGGGTGACGCACGCCTTCGTGACCCCGGCG >> 2980185
3300860 << C*C**CA***G**GC*******GTG***G**C*AC*AG*-**C*****T*G************T*G***T*GA*G << 3300787
2980186 >> GCACTGGCCTCCGTCGACCCGGCCGGGCTCGACGACCTGCGGGTGGTGCTGTCCGGCGGCGACGAGGTGCCCGCG >> 2980260
3300786 << **C****C*T*C*********TC***GC**TG***CT*****GTG******CA***A**A**C*G*G****CG** << 3300712
2980261 >> GACCTGGTGCGCCGCTGGACCG-GCACCGACGACGCGGGCGTCCGGGAGTTCCGGGTGCTCTACGGCCCGACCGA >> 2980334
3300711 << **A****GGTT***C***A*C*A*CC***-*T**-*A--*-*T*T--*---*-*--*-**--****C******** << 3300653
2980335 >> GGCCACCATCGTCGCGACCGCGGTC-G-ACCGCGGGCAGCCG-ACCGCCCGGTCCTGCATCGGCACGCCGGTGC- >> 2980407
3300652 << *T**********CT***A-*TA***G*G*****A*A-*G***C**C*C***T**TG-*******CCG***T*G*C << 3300581
2980406 >> CGGGGATGCGGACGCTGGTGCTCGACGCCCGCCTGCAGCCGGTGCCGGTCGGGGTGGCGGGCGAGCTGTACCTGG >> 2980480
3300580 << ***G*AG*CA*A**C**-*G**C***GCC**C*****A****G****T*C**G***T*G*********G*****A << 3300507
2980481 >> CGGGCCCGGGGCTGGCACGCGGCTACCTGGATCGCCCCGGCACCAGCGCGGGCCGGTTCGTGGCCTGCCCGTACG >> 2980555
3300506 << *G***TTG*G******GT*C*********T*G**C**C**CGA**G****GTC******T*G***TT******** << 3300432
2980556 >> CCGGGCCCGGCGAGCGCATGTACCGCACCGGCGACCTGGTCCGCTGGAA-CCGG-G-CGG-GGGCGCTG--GAGT >> 2980624
3300431 << C*TT***C********C**************A********C**C***GCC***GT*T**GG*****TC*AG**T* << 3300357
2980625 >> TCATGGGACGCAACGACTTCCAGGTCAAGGTGCGCGGCTTCCGGGTCGAACTGGGTGAGATCGACGCCGCGCTCA >> 2980699
3300356 << T*C*G**G**CCA****GT******C***T*G*****T*****GT*******G*****************G**CC << 3300282
2980700 >> C-CGCGCGTCCCGACGTC---CGGTACGCCGTGACCGTCC-C-GCGCCGCGACGGCGCCGGACCCGTCATGCTGG >> 2980768
3300281 << *T**-**TGT********CTT*A*CG*T**TG*GA**C**T*G**T*****C***-**T*G***-*-*--***** << 3300213
2980769 >> TCTCGTACGTGGTGCCCGAGGCCGGGGCGCTGCCG-G-CCGAAGCCGACCTGCGCGCTGCCC-TGACCACGGTGC >> 2980840
3300212 << *CC****A***TT***-*G*******GT**T-***A*T***GGGC***T***TG***-**T*C**C**C**G**C << 3300141
2980841 >> TGCCGTCCTACATGGTGCCCGCCG-CGGTGCTGATCCTCGACCGGATCCCGCTCTCACCCAACGGCAAACTGGAT >> 2980914
3300140 << *****TTA***********-**T*A**T*GT**G*CT*****CT*C*C*****CTCG****G*********G**G << 3300067
2980915 >> CGCCGCGC-GTTGCCGGCTCCGGTGTTGCAGCCC-AA--G-CGATT-CCGGGCGCCGTCCAC-GCCGATCGAGGA >> 2980982
3300066 << *****-**T*G******TC********-*-***CC**GG*A***C*T***G***********G****-******G << 3299996
2980983 >> GATCGTGGCCGGGGTGTTCGCCGAGACGCTGGGGCTGACCGGACCGGTCGGCGCCGACGACGATTTCTTCGCCCT >> 2981057
3299995 << GCG*G**AC**G**GG*T****AG*CA***G**GC**C**T*---********A********CG*******TT** << 3299924
2981058 >> CGGCGGCAACAGCCTGGTCGCGACCCGGGTCGCGGCGCGC-CTGGGTGCCGC-GATCGACGCGAGTGTGCCGGTA >> 2981130
3299923 << **********AGC***A*C*****CTT***C*A***-**TT***G*C*****G*C*--*A-***G-********C << 3299854
2981131 >> CAGCTGATCTTCG >> 2981143
3299853 << ***CG***C**** << 3299841
Statistics
Matches: 3418 (66.85%), Mismatches: 1302 (25.46%), Indels: 393 (7.69%)
ATpairs: 23.87%, CGpairs: 76.13%, GTpairs: 0.00%
:i = 3299952
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 6280957
highcenter: 6281005
testcenter: 6280981
im3: 41.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3300127 center: 6270067 interval size: 300 g: 3
Alignment explanation
Indices: 2968607--2970153,3299914--3301459 Loop: 329760 Score: 445
Left Length: 1547 Right Length: 1546 Average length: 1546.5
3 most common centers (desc): 6270067 6270064 6270068
2968597 >> (LF) GCCCCCGACG
3301469 << (RF) CGCTCCCGTG
2968607 >> CGACGGTGACCTACGGCGAGCTCGACCGCGAGTCCGCCCGGCTGGCCCGGCGGCTCGTCGCACTCGG-GTGCGGG >> 2968680
3301459 << ***-***G*******T**G**********AC*T**TT*********C***CA***CT***TC*T***G**-***G << 3301387
2968681 >> CCGGAGACGGCCG-TGGGGATCGTGCTGCGCC-GGTCGGTGGAATCGGTCCTCGCGGCGTGGGCGGTCGCGC-GA >> 2968752
3301386 << *******-*G*A*C*G*G*G*C*-***A*T**G****************CCG*****A*GA******C**GTT** << 3301314
2968753 >> TGCGGGGCGGCGATCGTGCAGATCGACCCGGCGTATCCGGCCGCGCGCATCGAGCACATGATCGCCGACAGCGGC >> 2968827
3301313 << G-***G******A******G******A***GAG**G*******T***C****GG******A*******AAG***A << 3301240
2968828 >> GCGCGGACCGTG-CTCACGGTGGCCGAGCACCGGGATCGGGTGCCCGACG-GCGTGGCCGCGCTGGTGCTGGACG >> 2968900
3301239 << ***-*AG*A*C*C******A**TC**GG*****A*GGTGGG******A**T*C*G**CA*-*T*GG**A****** << 3301167
2968901 >> ACCCGGCCACCCGCGCGGCGCTCGCGGGCA-CCGCCGACGGGCCCG-TCGGCGACGACGAGCGGACCCGC-CCGC >> 2968972
3301166 << ******TCAA***C**AGC*C*-**A***GC****-*G***TT***T**TG*G*C*G******G***-**C**** << 3301095
2968973 >> TGCGTCCGGCCGACACGGCGTATCTGACCTACACCTCCGGCTCCACCGGGACGCCGAAGGGTGTGCAGGTGACCC >> 2969047
3301094 << ****C*A**TCT**G****G***C*G*A*********C**A**C*****G**G********G***CA***G**** << 3301020
2969048 >> ATGCCGGGCTGGCCGGGCTGATCGCCGACCGCGTCGCCGCCTA-CGGCATG-GCCGCGGATTCG-C-GGGTGTCC >> 2969118
3301019 << *G*C***G***A**TTGA*GCG******CA***-***T**C*AA**T*C**G***-**-*G-**T*G*****GAC << 3300949
2969119 >> TA-TGCGCTCTCGCCCAGCTTCGACGCCTCGCTGGAACAGTTCCTGACCTGCTTCGCCAGCGGCGCCGCGCTGGT >> 2969192
3300948 << T*G*A***CT-****C********A***C**T**GAGC*GG*C***AA*CG*G***C*C***GC***T****G** << 3300875
2969193 >> GGTGGTGCCC-CCGGAGATCATCGGCGGCGAAGGGCTCACCCGGCTGCTCGCCCAGGCGCGCGTCACCCACCTGA >> 2969266
3300874 << GT*G*GG**CT****C*-*CC*********GC*TT*****C**GC****C*A*CG**T***CT****C***CGGA << 3300801
2969267 >> CCCTCACCCCCGCCATGCTGGCCACGGTCGATCCCGAACCGC-TGACGGAACTGCGCGCG-GTCGTGGTCGGGGG >> 2969339
3300800 << A*T*****T**A**CG*****C*********-*****C*C**C*G**G**CT****-**TG**CG*******A** << 3300728
2969340 >> CGACGT-CTGCCCGCCGAACGTCGTGGAACGCTGGACCG-GG-CCGTGGGCGTTGTTGAACGAATACGGGCCCAC >> 2969411
3300727 << A**C*GC*****-****C*AG*C*GGT*G**C***A*C*A**C***GTTG*-*G-*TG****AG********C** << 3300656
2969412 >> CGAGGCGACC---GTGACCGCCGC-GTGCGCGCGCCTGCGGCCCGGCCACGACCG--CACCGTGGGCGGACCGAT >> 2969480
3300655 << ****T*G***TAG*****-*TA*TA**G***T*GC***AT-*****T*CC*-***TA****T*G*****G***** << 3300584
2969481 >> CCGCGGGGTCGCGG-CGATGGTGCTCGACCGGACCCTGCAACCGGTGCCGCCGGGCACGCCGGGGGAGCTGTATC >> 2969554
3300583 << ******G****CA*A**C**-*G**C******GCC*****A****G****TA****CA*T*G**G******G*G* << 3300510
2969555 >> TGGCCGGGC-CGGGCCTGGCGCGCGGCTACCGGCACCGGGTCGGCGAG-ACCGCGGCCCGATTCGTCGCCGACCC >> 2969627
3300509 << **A****GTT**G**-****GT*C*******A*T*****G-***C*GAG******GTC**C***T*****T**** << 3300437
2969628 >> GTACGGTGCGCCGGGGGAGCGGATGTACCGCACCGGTGATCTCGCGCGGTGGCGCACCGACAG-CGCCGAGCCCG >> 2969701
3300436 << ******GTT******G***********************G**C*A*********C-***-***T*****C**--* << 3300366
2969702 >> AGCTGGAACTGTTGGGCCGCAGCGACTTCCAGGTCAAGATCCGCGGGTACCGGATCGAGCCGGGCGAGATCGACG >> 2969776
3300365 << **C*G***ATGC*G*****CCA****GT******C***********T*A***G*****T*AG**A********** << 3300291
2969777 >> CCGCTCTGACCGGGCACGAGC-ACGTCGAGCTGTCGGTGACGGTGCCGGTGCCGAACAA-GTCGGGCACGACCGT >> 2969849
3300290 << ****G***C*TG*****-*G*C*******T***C*GTGG***G*-*C*GGT***G**GCG*C******CG****G << 3300218
2969850 >> ACTGGCCTCCTACGTGGTGCCGGTGCGCGGTCACCGCCTCGATGTCGC-CGAACTCCAGCG-GTTCGCCCGCGCG >> 2969922
3300217 << C****ACC*C**A***TT****GC**-***C**C*T**CA**GGC*G*C******C-*G**G*GT**ACCG**** << 3300145
2969923 >> ACGCTGCCGCCGCACATGGTGCCGACGGT-GCTGATGCCGCTGGA-GAGCCTGCCGGTCAACGCCTTCGGCAAGG >> 2969995
3300144 << GA*C*****TTAA***********-*T**G*T*G****A*T*G**G***C-*****G*C*C*G**TG******TG << 3300072
2969996 >> TGGACCGCCGGGCGCTGCCGGAACCGGACTTCGGTG---CCGTGCCGGTCGGGCGTCGACCGGAGAC-GCCG-CG >> 2970065
3300071 << *G*********GT*********C****AC****GG*CTT****-*CT**TGG***-**-***AGG**G****A** << 3300000
2970066 >> GGAACGGATCGTGGCGGAGCTGTTCTCGGAGGTGCTCGGCGTGCCCGAGGTCGGCGCCGACGACAGCTTCTTCGC >> 2970140
3299999 << T*CG**GGGA***-**GC**G-*T*C*GAG*************C**TC********A*******C*********T << 3299927
2970141 >> ACTGGGTGGCGAC >> 2970153
3299926 << ***G**G***T** << 3299914
Statistics
Matches: 1075 (67.70%), Mismatches: 430 (27.08%), Indels: 83 (5.23%)
ATpairs: 23.81%, CGpairs: 76.19%, GTpairs: 0.00%
:i = 3300127
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 6270043
highcenter: 6270091
testcenter: 6270067
im3: 69.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3300159 center: 6284119 interval size: 300 g: 3
Alignment explanation
Indices: 2983579--2984703,3299437--3300552 Loop: 314733 Score: 230
Left Length: 1125 Right Length: 1116 Average length: 1120.5
3 most common centers (desc): 6284140 6284119 6284122
2983569 >> (LF) GCTCGACGCC
3300562 << (RF) GGACCTGGCC
2983579 >> CGGCTGCGGCCGGTCCCGCCCGGCGTGGTGGGGGAGCTGTATCTCGCCGGTGTCCAGGTGGCGCGCGGATACCAC >> 2983653
3300552 << *******TA****GC***TAC******TGG**G******G*G**CA****GTT*CG*G****GT*C**G****AC << 3300478
2983654 >> GCCCGGCCCGGATTGACCGCCGAACGGTTCGTGCCCGACCCCTACGGGCA-C-GGT-GAGCGGCTGTACCGAACC >> 2983725
3300477 << TT******C**CG*G*****CG*C******T*GC**T****C*****GT*C*G**CG******T*******G*** << 3300403
2983726 >> GGTGATCTGGTGCGCCG-CAACCGCA--C-C-GGT-GACCTGGAATATCTCGGCCGCACCGACTTCCAGGTGAAA >> 2983794
3300402 << *****G********CA*C*CC*****CT*C*G**CG**CC*G*****GC*******CCA****GT*********C << 3300328
2983795 >> CTGCGCGGGTTGCGCATCGAACTCGGCGAAGTCGAGGCCGTGCTCGC-CGAGCATCCCGGTGTCGCGCGCGCCCT >> 2983868
3300327 << T*G*****T**G**************A**CT****G****GG**C**T**-***GT***TG****TT*AC***TG << 3300254
2983869 >> GGCGGCCGTGCGGTC-CACCGGCGCGG-CGGC-CCG-GCTGGTCGGC-TACCTCGTGCCCGCCCCCGGCGC-G-A >> 2983936
3300253 << GT**GA**-**GTG*C*****GC****C*T**T***G******-***C**AC*CTT***-**CC****-**T*G* << 3300183
2983937 >> CCCTCGAT-GTCGACGCCGTGCTGGCGCACGCCGCGGCGGAGCTGCCGGACTACATGGTGCCCGGTGCCG-TGGT >> 2984009
3300182 << **C*-**GG*G*GC**TTG**TGG*******AC**G***GA*C*****T*A***********-*GT*A**T*GT* << 3300110
2984010 >> CGTGCTCGAC-AGCGTGCCGCTCACCCCGTCGGGCAAGCTGGACCGCAACCGCCTGCCGGAACCCGACGTCGC-G >> 2984082
3300109 << CG**T*****C**-********C*C***GT*G*****T**G******GCC*TC********C**C*ACA****G* << 3300036
2984083 >> CA-CGG-CGCGTACCGGGAACCGGCGACCTGGC-TGGAA-C-GCGAGGTCGCGGAAGTCTTCGAGCACG-TGCTC >> 2984151
3300035 << C*T*G*A**T******G*GC***A*G***-*G*C*G**CC*G**GGA**-***GC-*G**T**G-*A**C***** << 3299965
2984152 >> GGTGTCGAGCGGGTCGGCGCCGACGACGACTTCTACGCCCTGGGCGGCAACTCGCTGCGCTCGGTGCAGGTAGCC >> 2984226
3299964 << **G**C*GGT*********A********C*****A**TT**G***************AACC**TG*T****C*AC << 3299890
2984227 >> GGCGAGCTGTCCCGGGATCTGCACTA-CGAGGTACCGGTCAGCTGGTTCCTGTCCGATCCGCGCCCGGCCGACCT >> 2984300
3299889 << *G***T***-*--***G-*CG*CC**A***G**C*****--**T**GCT-***A**C-*CT****TG****C**C << 3299823
2984301 >> CGCCAAGCGCATCGAAACCGGGATGCGCTCGGGCCGGCCCGCCCCCGAACCAACCGCCGCGCTCTTCGACGTGCT >> 2984375
3299822 << **CAC-***C--****C*A**G---**T-**TG*****C-**CTAC*A-*C--****C*****CC-**G**-*-* << 3299762
2984376 >> GCTGCCGATCCGCACCGGCGGCGAGCAGCCAC-CGCTGTTCTGCATCCACCCCG-CGTCCGGTCTGGCCTGGTGC >> 2984448
3299761 << *A*****A*C**CG*C***T***GG*-***G*C*G********AC***GC**C*C****C***-**A******** << 3299689
2984449 >> TACCGGCCGCTGGCCGAATTCCTCACCGGCGACCGGCCGATCTACGGCTTGCAGGCGCCGCAGCTCGGCGGCGAG >> 2984523
3299688 << ***T*GCC****GA**GCGT***CG**TG****CA****C*C*****CG****TA*******GC**T******GG << 3299614
2984524 >> GAGCCCGGCCCCGACTCCATCGTCGAGACCGCGCGC-CGCTACGTCGCCGAGATCCGCGGCGTGCAGCCACACGG >> 2984597
3299613 << *--**C**AA*-*GCCT***CTG****C*C**-**TC*T******C****GG******AG*T*G*****C***** << 3299543
2984598 >> GCCGTACCACCTGCTCGGCTGGTCGCTCGGCGGTCTCATCGCCCACGCGGTCGCCGCCGAAATACGTGCCGCCGG >> 2984672
3299542 << A**************************C*****C********C****T*T*C**C*ACG*CG*C**C**C**C** << 3299468
2984673 >> TGAGGACGTCGCGCTGTTGGCGATGCTCGAC >> 2984703
3299467 << C*****C**C******G****G********* << 3299437
Statistics
Matches: 768 (66.44%), Mismatches: 317 (27.42%), Indels: 71 (6.14%)
ATpairs: 24.09%, CGpairs: 75.91%, GTpairs: 0.00%
:i = 3300159
tupleindex: 3
intervalindex: 1
matches_in_interval: 132.0000
lowcenter: 6284095
highcenter: 6284143
testcenter: 6284119
im3: 41.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3300660 center: 6274636 interval size: 300 g: 3
Alignment explanation
Indices: 2973482--2974571,3300065--3301150 Loop: 325493 Score: 335
Left Length: 1090 Right Length: 1086 Average length: 1088.0
3 most common centers (desc): 6274636 6274637 6274633
2973472 >> (LF) CCGTCCACCG
3301160 << (RF) TCAAGGCCCG
2973482 >> TCGAGTGGCTGCGCGCCGACGAGGAAACCG-TCGCCACCGTCCCCAGCCCGGCGGGCCCGGTGCTGCCCGACACC >> 2973555
3301150 << ***C***-***CG*****-**GG*C*****T**T**-*T*C**C-***C*TG**G***-*G***C**AC**C*T* << 3301081
2973556 >> ACCGCGTACGTGATCTACACCTCCGGTTCGACCGGAACGCCGAAGGCCGTGCAGGTCTCCCACCGTGGCCTGGCG >> 2973630
3301080 << G*C**G**A**G***********C***********G**G*******C****CA****T*****C*G******A*G << 3301006
2973631 >> AATCTCGTCGCGGCCCAG-GC-CGATGCCTT-CGCGGTGGACACCG-C-GTCGGTCGTGCTGCAAGTGGCGTCAC >> 2973700
3301005 << **-**--****G***C**A**C**GT**C**A**TG***GC*-***T*G*T*G*C-******T*GA*G***T*C* << 3300936
2973701 >> CGGGTTTCGACGCGTGCG-TG-TCGGAGCTGCTGCTGGCGCACAGCCGCGGTGCGTGCCT-GTCGATCGCACCG- >> 2973773
3300935 << **T*G*****A**G-***T**G***-*G******A*G**G*A*C**C***GC**GTGC**G***-*****G***T << 3300864
2973772 >> CCGCAGGTCTACGGCGGGTCGGAGCTCGAGGACCTGATCGGCCGCG-AGCACATCACCCACGCGATCATCACGCC >> 2973845
3300863 << ***C-***CCA******GC****T***TG*GC*C**G*-**A****C***CC*****C*****GA*******GT* << 3300791
2973846 >> GTCCGTGCTCGGCACGATGGCACCCGATCGG-GTGCCCTCGCTG-GCCACGGTCGC-GGTCGTGGGCGAGGCGAC >> 2973917
3300790 << G****G***C******C*G*-******C***G**GT**CT*T**G*C****-*-**A*****CA**A******-* << 3300720
2973918 >> CGGCGCCG-ACCTCGTGCGGCGCTGGGGAGCGGGTCGTCGCCTGCTG-AACCACTACGGACCGACCGAGACCACG >> 2973990
3300719 << A*G*****C*A**C*GGTTG**C***AGC*A***G**GTT***-**TG***CA******C**************G << 3300646
2973991 >> ATCTGGGCGACCGGCTCGACCGAACTGCGG--CCCGG-CGACCAGGTCACCATCGGCGCGCCGATCCCCGGCACG >> 2974062
3300645 << ***CA*T***A-*T-*-*A***G**G**A*AT*****T**CC*G*T************CG*******C****--* << 3300576
2974063 >> TCGGTG-CGG-GTACTCGAC-GCCTGGCTGCGGCCCGTGCCGGTGGGCGTCACCGGTGAACTCTACGTCGGCGGG >> 2974134
3300575 << ******A***A**G**C***G*C*-******TA**C*G****T*******C*****G**C**CG**G*-*A*G** << 3300503
2974135 >> CCGGGC-CTGGCCCGCGGCTACCACGAGCGGCCGGGCCTGACCGCGACA-CGTTTCGTCGCCGACCCGGACCG-- >> 2974207
3300502 << *TTG**C******T*C*******ACT*G********C**G******-**C**C***T*****T*****A**C*GT << 3300429
2974207 >> -GCCCGGCGAACGGATCTACCGCACCGGCGACGCGGTCCGCTGGGTACGCGGCCGC-GACGGCCTG-GAACTGGC >> 2974277
3300428 << T***C*****C*****C***********A***GA***--**-**-*C-********T****G*CC*G**CC*G*T << 3300359
2974278 >> CTACCTGGGCCGCAACGACCAGCAGGTCAAGATCCACGGTCTGCGGATCGAGCCGGGCGAGATCGACGCCCACCT >> 2974352
3300358 << T***C*G*****CCA******G*****C*******C***TA*G**G*****T*AG**A************CG*** << 3300284
2974353 >> GGCCCGCCGAC-CCGCCGTCGCGCGGGTCGCCACCGTGGATCAGCGCGGTCCCGCCGGGGAAC-CGGTGCTGGTG >> 2974425
3300283 << ***T**C*-**T***T*****TT*A**G*T****CG*G*CG**G***TG-*C**C****G*C*T*G*G******* << 3300211
2974426 >> TCCTACGTCGTCCCGGCGGCCGGCGCCGAACTG-GACGTGACGGCG--CTGCGCGCGGATCTGGAACGTGC-GCT >> 2974496
3300210 << C*C**A**CTTC***-*******-**T*G**G*A***G-*G*G***TT***TG****G*GC***G-**G**A*C* << 3300140
2974497 >> CGCGCACTACATGATCCCCGCCG-CGATCGTGGTACTCGACGACCTGCCGCTCACTCCGGTCGGCAAGGTCGATC >> 2974570
3300139 << CG**T*A******C*C**-**T*A*****T**G*CT*******CC*******C*CG**GTG******TG****G* << 3300066
2974571 >> G >> 2974571
3300065 << * << 3300065
Statistics
Matches: 773 (68.65%), Mismatches: 277 (24.60%), Indels: 76 (6.75%)
ATpairs: 25.61%, CGpairs: 74.39%, GTpairs: 0.00%
:i = 3300660
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6274612
highcenter: 6274660
testcenter: 6274636
im3: 55.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3301468 center: 6284161 interval size: 300 g: 3
Alignment explanation
Indices: 2976279--2982938,3301223--3307960 Loop: 318284 Score: 1521
Left Length: 6660 Right Length: 6738 Average length: 6699.0
3 most common centers (desc): 6284188 6284152 6284203
2976269 >> (LF) CGGAACCACG
3307970 << (RF) AGGGCGGCTA
2976279 >> CACCCTGCC-CGGCATCCTCGCCGCCTCCGCCGCG-GCAGCGCCCGACGCGATCGCCGTGCGCTGTGCCGACGAG >> 2976351
3307960 << ***C***C*C***-**C***T***TCT******TTG**-*A*********GC****C******GT--**-***C* << 3307891
2976352 >> G-CG-CTG-ACCTACCGGGAACTCGACGAGCGGTCCGACCGGCTGGCCCGGCTCCTGCTGGCGCGCACGG--CCG >> 2976421
3307890 << GA**T*TGG***********C***********GC**T****G*****C***C*C**GT*G**-*-*****AC*** << 3307818
2976423 >> -GACAC-GATCGTGTCGTCGCGATCGCGCTGCCGCGTTCGCTCGCCGCCGTCACCGCCGTGTGGGCGGTGGCCAA >> 2976494
3307817 << G*G*CCT**G****--**C***C*C**GT*******GCCG****T***CT*******CT*G********G***** << 3307745
2976495 >> GGCCGGAGCGGCGTTCCTGCCGATCGACCCCAGCCTGCCCGCCG-AGCGAATCGCGTTCCTGCTGTCCGATTCCG >> 2976568
3307744 << *T****A**G****T*C****GC********C**-*T****CC*C****C******GT*T****GC********* << 3307671
2976569 >> GCGCCGC-GCTCGCCGTCACC--GAC--A--GC---GCCGCC--GC-----TG-CCG-CGGTG-CCCGCGG-CGG >> 2976622
3307670 << ****-**A*****C*G*C***GA*G*GC*TA**GAA******GA**GCCTT**C***T**TGGT****C**T*** << 3307597
2976624 >> ---TC--G--C-----G--AC-G-CTGGTGCTCGACGACGA-GGACACCCGCCGCGCCGT-CGAATCCGTGCC-C >> 2976678
3307596 << GTG**GG*CT*TGGGG*CC**A*C**********C**-**GG***-**ACT**A**C*G*C***--*T*G***A* << 3307526
2976679 >> GCGG-GGCGGGTCACCGATGCCGAGCGCGGCGGTCCGG-TGCGTCTCGACGACGTC-G-CGTACCTGATCTACAC >> 2976749
3307525 << **G*G***G*********G*****G***T*-*G***G*G****GC***-**-*T**G*C**************** << 3307454
2976750 >> CTCCGGCTCCACGGGGACGCCGAAGGGCGTGCTCGTCACACAT-CGTGGACTCGCGGATCTGGTCGCCGCGCAAC >> 2976823
3307453 << *********C*****G**G**G****GC**GC*C*****G**GC**-**G**C**GAGC**G*G*GT**T***C- << 3307381
2976824 >> ATCGC-CTGCTCGGCGTCGACCGGAACGCGGCGGTGT--TGCAGGTCGCCGCGCCGAGTTTCGACGCCTCGGTCT >> 2976895
3307380 << ***GTC***A*****T**-****TG**-**G*G*GTGGG****GA**A**A*T**G**G**************CG << 3307308
2976896 >> TCGAGCTGCTGCTGGCGCACGGGGCGGGCGCACGGC-TGATCGTCGCACCGCCGCAGG-TGTACGGCGGGCCCCA >> 2976968
3307307 << *C**T***********GAA**G*********-*TG*T**C**T****G***C*-*C*GG************CCC* << 3307235
2976969 >> ACTGGCCGATCTGATCCGCGGCGAGCACGTGACGCACGCGGTGGTGACCCCCTCGGCGCTGGCGACCGTCCCGGC >> 2977043
3307234 << *********G***G*C****G***T*CC************A*GT*G**C***C*************C**C**G*T << 3307160
2977044 >> CGACGGGCTCGACGAACTG-C-G-GGTGCTGGCGACGGCCGGGGAGGCGGTCGGGGTGGAACTGGTCGAGCGGTG >> 2977115
3307159 << ***C***A*CG****A***C*G*G****T*--**A****-**G******AC*AG**TG**C********GTGG** << 3307088
2977116 >> GGCGCCCG-GCCGCAGGATGGTCAATCTCTACGGTCCCAGCGAAT-CCACCATCTGGGCCACCGCAGGCGA-CC- >> 2977188
3307087 << *T*-*CA*G***T*G*G***GT***GT*C*****-***CA**C*CC*****C**CGG********GAG*T*C**C << 3307015
2977188 >> -TGCGCCCCGGCGCGCCGATCACGATCGG-CGGCCCGGTCGGACCGGTGGCGGCGGT-CGTGCTCGACACCTGGC >> 2977258
3307014 << T**CACC****AGT****C**G**G*C**A*A***-***CG*-*C*GTA***T*A**A******C***GCCG*** << 3306942
2977259 >> TGCGGCCTGCGCCGATCGGTGTCGT-GGGTGAGCTGTACCTGTTCGGCGCCGGGGTCGCGGCCGGCTACGCGGGC >> 2977332
3306941 << ****A**C*A****G-***CGT**GG*****************G****G****GG*C**GGC*A*****GAG*** << 3306868
2977333 >> AGGCGCGGGCTGACCGCGGCCCGATTCGTGGCCTGCCCGTTCGA-CGGCG-GCCG--C--ATGTACCGCACCGGC >> 2977401
3306867 << G*GTT***G*********GTT**G***GG****TT*****T**CC*****G*CA*TC*CC*************** << 3306793
2977402 >> GACCTGGTCCGGCGCAACCGGGACGGCGCCCT-CGAATTCGTGGGGCGCAACGATTTCCAGGTGAAGATCCGCGG >> 2977475
3306792 << **A*****CCA*TA*C**CGG*GC****C***C**G-***G****G**CCG***GCT****************** << 3306719
2977476 >> CACCCGCGTGGAGCTGGGCGAGATCGATGCGGCCCTGGCGG-CGCAGGACGCGGTGGCGTTCGCGGTGACGGTCC >> 2977549
3306718 << *AA****T*G******G**********GGTA*AC***-***T*G**GGGC*C******G******G*G******C << 3306645
2977550 >> CGC--GCCGGATCG-GCGGGG-GAGCGGTGG-TGCCGGTGT-CGT-ACGTGGTGCCCGCGGCG-GGTGCCGC-CG >> 2977615
3306644 << A**TA*A**-*-**T**TG*TG****G*G**G**C*G*G**T***C**G-*GG*TT*G*****A**G**A**C** << 3306573
2977616 >> TCTCCGGGACGGAGCTGCGCGGGGCGCTGGCCGACGAGCTCCCCGCCTACATGGTCCCGGCGGCGGTCGTGGTGC >> 2977690
3306572 << C*C***--***A-****-**GTG-**-**GC****GC***C****C*********C**G**G*****C**G**** << 3306504
2977691 >> TCGACGAGGTGCCGCTGACGGCCAACGGCAAGCTCGACCGGGACGCGCTGCCCGAACCCGCCTTCGCCGCA-C-G >> 2977763
3306503 << *C************C*****G**AGC***********A**GT*C**********GC**C*AC*****C**GC*G* << 3306429
2977764 >> GGA-ATACCGG--GCCCCGTCGACGTGGTCGGAAGCGGCGG-TCGCGGCCGCGTTCGCGGAGGTGCTCGGCCTCG >> 2977834
3306428 << **CG*CC***AGG******-*TG**TG**-***-*******C*C*****C*A*****T*G*G**********C*- << 3306358
2977835 >> ACCGG-GTG-GGCGCCGACGACGACTTCTTCGCCCTCGGCGGTGACTCCCTGAGTGCCGCGTCGG-TGGCGGCGC >> 2977906
3306358 << -****A*GGG********C***TC********T*T*******GTG***C***GAC***T*G-**AG*GT*G**-* << 3306286
2977907 >> GCATCGGCGCGGCGATGAACACGACCG---TGCCGGTACGGGCGGTGTTCGACTTCCCGACCGTGGCCGCCCTGG >> 2977978
3306285 << **-**A**T*TG***-*AA*CC*C***TCG*******C****T*T*G*****CCGC*************CCC*** << 3306213
2977979 >> CCACGCACGCCGCGTCGCTGGGCGGCGG--GCAGCGGGTCGCGCTGACCGCGGTG-GCCCGC--CCGGAGCGGCT >> 2978048
3306212 << ****A*C*-*A*C*C-**C*G**G***GTG***G**G**AG****G*********G*C****CA****G****T* << 3306140
2978049 >> GCCGTTGTCGCTGGCCCAACAGCGGATGTGGTTCCTGAACCGGTTCGAGCCGGACTCG-GCGGCCTACAACGTCC >> 2978122
3306139 << G***G********G*C**C******G**********G*****G****GG**G**C**GT***-********T**C << 3306066
2978123 >> CGGTGCTGCTGCGGCT-GTCGGGCCGATTGGATCCCGCCGCGCTGGCG-GCCGCCCTACGGGATGTGATGGCTCG >> 2978195
3306065 << **A*GC*G*****GT*G*T****C**G*G*-*GT*C*A*******-**G*****C**CCGG**G*****G**G** << 3305993
2978196 >> GCACGAGGTGTTGCGCACCGTCTATCCCGAGACCGACG-GGGAACCGCGGCAGGTGATCCT-C-GAC-GAAC-CG >> 2978265
3305992 << ******T***G*******C**C**G**C***CT**C**G***AC**-*TG*****GC*C**C*G***G*GC*C** << 3305919
2978267 >> -GA-GATCGCCCTGGA-ATCGGTG-CGC-GTCGATCCGGCCGCCGTCGAGGACACGATCGGCGAGTTCGTGCGCC >> 2978335
3305918 << G*CA*GG****C*G**C****AG*T***G*T***T*********GC****--**-*G*C*G**G*G***GG***C << 3305847
2978336 >> GCGGCTTCGACGTGACCACGCGGGTACCGCTGCGGGTCGGCCTCTTCGAACTCGCGGGCA-CGACC-GGAGAGTT >> 2978408
3305846 << **T********G*G***--*A**TG***G*-**---**G*****TG**AC**-***GT*GC**G**G**G*-*GT << 3305780
2978409 >> CCTGCTGGCGCTGGTGGTGCACCACATCGCGGGGGACGGCCGGTCGATGGGCCCGCTGGCGCGCGACGT-GATGA >> 2978482
3305779 << ******G*C*T*G***G****A********G*GG******A*****G***GT******T*G******G*G*GG*- << 3305706
2978483 >> CCGCCTACGCCGCCCGGA-CGGCCGGACAGGCGCCGGCCTGGGCGCCGCTGCCGGTGCAGTACGCCGACTACGCC >> 2978556
3305705 << *********TC*****AGC****C*GC*-***T**G******T***************************A**CC << 3305632
2978557 >> CTGTGGCAGCGCGCGGTGC-TCGGCACGGCCGAGGATCCCGGGTCGCTGATGTCGG-CGCA-A-CTGGCGTTCTG >> 2978627
3305631 << A*************G-***G*C***CTA****GG**GC***TGT-**-*-**C***C***GG*C*****G*T*** << 3305561
2978628 >> GCGCGCCACCCTCGCGGGCGCGCCCGACCGCCTCGAGCTGCCCACCGACCGGCCCCG-CCCGCCGGTGGCGTCGC >> 2978701
3305560 << *****T*C*C**C**G*T*GA******CCTT**CGG*******AT************A*******TTG-**CT*- << 3305488
2978702 >> TGTCGGGCG-CG-CGGATGCCGGTCGAGATCGGCGCCGACCTGCAC-G-CACGC-CT-GCTGGAACTGGCCCGGT >> 2978770
3305487 << *T**TG***C**A***-*****A***G*C*-*-*-******T**A*G*C*C***C**G**G*-*G******T**C << 3305418
2978771 >> CGCACGGCACCTCGC-TGTTCATGGTGCTGCACGCGGCACTGGCGGTGGTGCTCGCACGCGC-CAGCGGCAG-CG >> 2978842
3305417 << ****C***CA*T-**T***************C*A****C*********G****-**C****CA**G****C*C** << 3305345
2978843 >> ACGACGTCGTGATCGGCACCCCGGTCGCGGGCCGCGGCGA-ACCGGGCCTCGACGAGCTGGTCGGCATGTTCGTC >> 2978916
3305345 << -****T****G********C*****C*********TG***G****G**-************************** << 3305272
2978917 >> AACACCCTGGCGCTGCGCAC-GCCGCTCGACGGCGGT-GAGCCGTTCGCGGACCTGCTCGCCCGC-GCCCGCGAG >> 2978988
3305271 << *********GA******CA*G*T**-*****G-***TG*G*C*G***T*G*GC*****-**C***G*T***C**G << 3305200
2978989 >> ACGGATCTGCGCGCCTTCGAGCACGCGGACGTGCCGTTCGAACGCGTCGTCGAGGATCTGAACCCGGACCGCTCG >> 2979063
3305199 << *TG**T***CG***CT***G******G********G********C**C**C*****CT*GCC**-*******C-* << 3305127
2979064 >> GCCCCGCACCATCCGGTGTTCCAGGTGATGCTGGCCTGGCAGAACCTGGCCGACACCCAGG-TGAGCCTGCC-GG >> 2979136
3305126 << *AC*-***C*CC*****GC*C*****GCG***GT**CAG***C**C-*A***C*G****GGG**G*C*****G** << 3305054
2979137 >> A-TGTGCAGGTGTCCCTGGCCGAGG--C-CGACACCGGGATCTCCCAGTTCGACCTGCAA-TGGGTCGTATCGGA >> 2979206
3305053 << CG**-**-*G**-*T*-*-******TT*A*****A**GGCGCC**T***********C**G**G*-***--**G- << 3304988
2979207 >> TTCCTATGGGAAAGGAGGTGTGGCAGAGGGC-ATTTCCGGAATGCTCATGTATGCGCGTGAGCTGTTCGACCCGG >> 2979280
3304988 << --**-*G*--*G-*GG*GC*-***AGC*GA*C*GGC***-***--**C*G**G**GTGG***A********C*G* << 3304923
2979281 >> CAACGGTGGCGGGATTC-GGACG-ACGGCTGGTGCGAGTGCTGGAAGCGGTCGCCGACGATCCGTCGGTCTCGGT >> 2979353
3304922 << *G**G**--**T**GC*A**G**C*******TG***CT*G****GG*****C****G***G***C****CG**T* << 3304850
2979354 >> CGGGGAAATCGACTGGCTGGAC-G-CGGACGAGCGCTCGCACCTGCTCGCGCG-CACCGGCGCA-ACACC-C-GC >> 2979422
3304849 << *G*G**G******CG**-*G**G*T*G*-***T**CC*G***A*-*C***G**A*******G*GC*CC**C*G** << 3304778
2979423 >> GCCGACGGTGCTGCTGCCGGAGGTGTTCGACGCGGCGGTGCGCAGCG-CA-G-GC-GC---G-GGTG-TCGCCGT >> 2979488
3304777 << ****-**GT-*-***GC**G**ATG****G***GT*G***CG*G***T*GG*T**G**TGG*G****C******* << 3304706
2979489 >> CGTGTCCGGGCAGACGCGGCTGACCTACGCCGAACTCGACGAACGGTCGAATCGGCTGGCGCGCCACCTGATCCG >> 2979563
3304705 << **C*CT***-**G-****-****C****GC***A******GCC**GC****G***A*******ACGC******CG << 3304634
2979564 >> GCGCGGCGCCGGACCCGAGCGCACCGTGTTG-GTTGCGG-TGGCGCGCTCGGTGGAGTCGGTGGTGGC-GTGGTG >> 2979635
3304633 << G*****AGA***AC*C*-*A*-****CT*G*G*G*GC**G**T*G******T*G**A**G***G*GT*G*GGG*G << 3304561
2979636 >> GGCCGTGGTGAAGACCGGCGCGGCCTATGTCCCGGTCGACCCCGGGTATCCCGCGG-GCAGGATCGAGCAGATGG >> 2979709
3304560 << *-****G*GG***********G****AG**************CTT***G**C**G*T**C**AC**-***G***G << 3304488
2979710 >> TGACGGATTCCGGC-GCGACGCTGGGGCTGACCGTGGCCGCGGTGCGC-GACCGGTT-GCCCGCTGCCGTCGAGT >> 2979781
3304487 << *G**G**G******T***G*-**G**A**G***GC*****T*GT-***G**T***G*G****G*-****G*AG*T << 3304416
2979782 >> GGGTCGTGCTCGATGC-CGACGC-CCGTGCCGACGACACCGCCGCGCGGCTCGCGGCGCTGCCGGGCGGCCGGAT >> 2979854
3304415 << G*GG*AC***C*-***A*****TA***-***AA*GC*C***T-**A**T*C-**AT*T*G****TG*G-**A*GC << 3304346
2979855 >> CGGCGACG--CCGAACGGCTGCGCCCGCTGCGGCCGGCGAACACCGCGTACGTCGTCTTCACCTCCGGCTCCACC >> 2979927
3304345 << **G*****TC****G*--*-*-******G****A*TG***A*AC-**G***G*C****T******C*****C*** << 3304276
2979928 >> GGCGTGCCGAAAGGTGTCGCGGTCACCCACGCGGGCATCGCCGAT-TTCCTGGCCGGGCAGCGCG---GATACGG >> 2979998
3304275 << **CTGT*****C**G*****************G***G*-*A***TG***CGG*T**TT*A*****TGG*CGA**T << 3304202
2979999 >> CGTCGGCCCCGATTCGCGGGTGCTGCACTTCGCCTCCCCGTCCTTCGACGCCTCGCTGCTCGAGATCCTGTTGGC >> 2980073
3304201 << *TG*TG************GTGG*****A******T*****TC*********CC**T****C**AG*C***G**** << 3304127
2980074 >> GGTCGGGGGCGCAGCGGCGCTGGTGATCGCGCCCACC-GAGCTGTACGGGGGT-ACGGAACTGGGCGAGTTCCTG >> 2980146
3304126 << GG****TGG**CG**GT*GT********A-****C**G***C*******G**GC***-****G*G***TG*C*** << 3304054
2980147 >> CGGACGCAGCGGGTGACGCACGCCTTCGTGACCCCGGCGGCACTGGCCTCCGTCGACCCG--GCCG-GG-CTC-G >> 2980216
3304053 << CT*GC*C*T***T*G************T*G********G**C*****CT**T******C*GT**C*A**C*C*A* << 3303979
2980217 >> ACG-ACCTGCGGGTGGTGCTGTCCGGCGGCGACGAGGT-GCCCGCGGACCTGGTGCGCCGCTGGACCGGCACCGA >> 2980289
3303978 << G**G*******G*CTG**T**CA******A**C*G*G*G*CT*G**T**-*****TG*******C***--**C*G << 3303907
2980290 >> CGACGCGGGCGTCCGGGAGTTCCGGGTGCTCTACGGCCCGACCGAGGCCACCATCGTCGCGACCGCGGTCGAC-C >> 2980363
3303906 << **A***GA**-**T---*---*-*----*-******T**G******T****C*****C**G***-*A****C*C* << 3303846
2980365 >> -GCGGGCAGCCGACCGCCCGGTCCTGCATCGGCACGCCGGTGC-CGGGGATGCGGACGCTGGTGCTCGACGCCCG >> 2980436
3303845 << G**A***C*A**C*C*****T**TG-*********G*A*****C*****G-****C*GC************TC** << 3303773
2980437 >> CCTGCAGCCGGTGCCGGTCGGGGTGGCGGGCGAGCTGTACCTGGCGGGCCCGGGGCTGGCACGCGGCTACCTGGA >> 2980511
3303772 << C****CA**************G**GG*G********G*****G*****C*****GC****C*TC*********** << 3303698
2980512 >> TCGCCCCGGCACCAGCGCGGGCCGGTTCGTGGCCTGCCCGTACGCCGGGCCCGGCGAGCGCATGTACCGCACCGG >> 2980586
3303697 << G**CAT***CGAC*GC****GC**G*****G***CTA**A*A**CAGG******C*G***C************** << 3303623
2980587 >> CGACCTGGTCCGCTGGAACCGGGCGGGG-GCG--CTGGAGTTCATGGGACGCAACGACTTCCAGGTCAAGGTGCG >> 2980658
3303622 << A***C****C*******-*-**-***TGG***TT****A**T*G****G****C************C***T**** << 3303551
2980659 >> CGGCTTCCGGGTCGAACTGGGTGAGATCGACGCCGCGCTCACCGCGCGTCCCGACGTCCGGTACGCCGTGACCGT >> 2980733
3303550 << ***C*****GT****C**G**G******TC******T********G*TG******T****G*A****GTA****T << 3303476
2980734 >> CCCGCGCCGCGACGGCGCCGGACCCGTCATGCTGGTCTCGTACGTGGTGCCCGAGGCCGGGGCGCTGCCGGCCGA >> 2980808
3303475 << CCA****-****A--*TT***AC***T*GC*********G*****GGT*C**-*--***TA****TG*AG*T*TA << 3303407
2980809 >> AGCCGACCTGCGCGCTGCCCTGACCACGGTGCTGCCGTCCTACATGGTGCCCGCC-GCGGTGCTGATCCTCGACC >> 2980882
3303406 << G****GCC*******GGT***GC*CC*GGC******GC*CG*************CT**TAGT*G*-*C**C**** << 3303333
2980883 >> GGATCCCGCTCTCACCCAACGGCAAACTGGATCGCCGCGCGTTGCCGGCTCCGGTGTTGCAGCCCAAGCGATTCC >> 2980957
3303332 << **********CT*G**CCA******C**G**G**CCG***GG****G*TT**G*T*---***C**C-***GCC** << 3303262
2980958 >> GGGCGCCGTCCACGCC-GATCGAGGA-GATCG--TGG-C-CG-GGGTGTTCGCCGAGACGCTGGGGCT-GACCGG >> 2981024
3303261 << *T*C*T**GC***G*CT**G**G*TGG**T**CG***A*C**G*****T*C*C****GA***G*TGC*G**--** << 3303189
2981025 >> ACCGGTCGGCGCCGACGACGATTTCTTCGCCCTCGGCGGCAACAGCCTGGTCGCGACCCGGGTCGCGGCGCGCCT >> 2981099
3303188 << *ACA*-***-*******G*************T***********AGC***G*C*******T*G*C*AG******** << 3303116
2981100 >> GGGTGCCGCGATCGACGCGAGTGTGCCGGTACAGCTGA-TCTTCGAGGCG-CCGACCGTCGCGACTCTGGCCGCC >> 2981172
3303115 << **GG*****G*G**C*T*GG*GG*GCT***G*-**C*GC*C***-*GG*TA*****C*****GC*C********* << 3303043
2981173 >> CGGGC-GGAA--TCGCAC-GCCGACACCGGCCGGGTGGC-GCTGACCG-CGCA--G-CCGCGGCCCGAGCGGGTG >> 2981238
3303043 << -*GG*A***GCC***A**G*C**G*C***T*-*TTG*G*G**T*-***T**T*TG*T**T**G*****G*TG*** << 3302971
2981239 >> CCGTTGTCGTACGCCCAGCAGC-GCATGTGGTTCCTCAACCGCTTCGAA-C---C--CG---A-GTCG---G--C >> 2981297
3302970 << **TG*****CGC**C****-**T*CG***********C****C***T*GC*CCC*CC**CGC*G*C**TGG*CT* << 3302897
2981298 >> CGC---C---TACAGCATTCCCGTCGTGATCCGGTTGTCCGGCAGCCTCGATC-GCGACGCCCTGCGCGCCGCGC >> 2981365
3302896 << ***CCC*CGG****T*C*C***T*****G*C**TG**GT***TG*C*****T*A**G-***C***CAT**C**G* << 3302823
2981366 >> TCGACGACGTGGTCGGCCGCCACGAGATCCTGCGCACCGTCTACCCGCTGGTGGCGGGCGAGCCGGTGCAGGTCG >> 2981440
3302822 << *CG****C***GTCG***********C*C********C**C******CT*GC**TG*****T**G*G******C* << 3302748
2981441 >> TGCT-G--CCCGTGGCGGAGGCGGCCGCGG-CG-C-CCGAGGTCGT--CCGGGTCGACCG-GGACGCCGTGG-CC >> 2981505
3302747 << ****G*TA****GGT***GG**G*A*T*GGA*AT*T***GGTG***CT***T*C**CTC*A**G****TGG*A** << 3302673
2981506 >> GAGG---CGGTGCGGGCG--TTC---CTCGCCACCGTGTT-C-GATGTGACCACC-CAGC-CACCCTT-CCG--- >> 2981566
3302672 << *G**CAA**GG*******CT***CTA******C*C*GGGGC*G*G**G*CC*CC*C*A*TA****C*GC***TGG << 3302598
2981566 >> -GGTC--CGTCTGTTC-G--ACCTCGGTGG--G--GACGAGTGGGTGCTGGCCGCCGCCATGCACCACATCGGCG >> 2981629
3302597 << G**T*CT*G**C*GT*G*GG***G***GGTGG*GG******TTG**G**G*A*GAC*A*C************G*T << 3302523
2981630 >> GTGACGGCGCCTCGCTGGCACCGCTGGCCCGCGACAT-GATGCTCGCCTAC-GAGGCGCGGTTGCTCGGTCAGGC >> 2981702
3302522 << AG******ACC*******T**********CA***CC*G*GC**-*******G*G*G***G*GC**-***T*CG*T << 3302450
2981703 >> GC-CGGCCTGGACGCCGCTGCCGGTGCAGTACGCCGACTACGCGATCTGGCAGCGCGCGGTGCTCGGCGCGGAGG >> 2981776
3302449 << *TA**TC***GG**TTG*C*T-*G*************A***T**G*C**********T*TG*******T*G**** << 3302376
2981777 >> AGGATCCCGCGTCGCTGCTGCACGCGCAGATCGACTACTGGACCACCCAC-CTGGCCGATCTGCCCCCG-CGGCT >> 2981849
3302375 << *G**G****CG***C*****T**TC****G***********CAC-*C*C*C****T**C-*T****CCTT*A*** << 3302303
2981850 >> GGA-GCTGCCGACCGACCGCCCCCGCCCGCCCGTGCAGTCCTATGCCGGGGCG--AGCGTGCCGAT-C-CGGATC >> 2981919
3302302 << **GG*A*G***-**********C**********G**G******--********CG*G***-*C*C*C*T*G*-** << 3302233
2981920 >> GGCGCCGAGTTGCACGCCGACCTGGAACGTGTGGCCCGCGA-ACACAACACGACCCTGTTCATGGTGTTCCACGC >> 2981993
3302232 << *T****AAGTGG***GCC**T**TG*C**G*****C-**G*G*******CAG*C*T********G**G*C***** << 3302159
2981994 >> GGCGCTCGCGGCCACGCTCGGCAGGCTGGCGGGCACCGACGACGTCGCCGTCGGCACCCCCTACGCCGGACGCGG >> 2982068
3302158 << G**********ACGA***CGT*G**T**T*G************T**T***********C**CAC*****C***** << 3302084
2982069 >> CGAACCCCAGCTCGACGATCTGGTCGGCATGTTCGTCAACACCCTGGTCCTGCGCACCCGGATGCGGCCGGGCAC >> 2982143
3302083 << *G*A**CCG***C***GCGT**T*******************C*****CA**********G**-**T**GG*-** << 3302011
2982144 >> GACT--TTCGCCGAGCTGCTCGCGCAC-GTCCGCGCGACCGATCTCGCCGCCTTCGGTCACGCCGACGTGCCGTT >> 2982215
3302010 << *G*CCC********G*****-******G*******T******G****T********GG***************** << 3301937
2982216 >> CGAGCGCCTGGTGCAGGAACTCAACCCCGTCCGCTCGCACGCGCACCACCCGCTGTTCCAGGTGATGCTGGCGTT >> 2982290
3301936 << ******C*****GC***AC*****A**C*GT********C**T**A***********************GA**C* << 3301862
2982291 >> CCAGAACCTG--GGTGCCACCGACTTCGCCTTGCCGGGACTGTCGGCCACG-GTC-GCCGACGCCGACACCGGCA >> 2982361
3301861 << **CG****T*GG*****CGCA*-**CCTT**CG*****-***-**-*TA**T***G*TC***TA*********** << 3301791
2982363 >> -CGTCGCTGTTCGACCTGCACGTCACCGTCTCCGACA-GCTACGACGCCGACGGCACG--CCCG-CGGGCATCAC >> 2982431
3301790 << A**-**TT************CA****CG**T****TAG**-**-**G***-*A**C**TT****T****-***C* << 3301721
2982432 >> CGGCGGGATCTCCTACGCGACCGACCTGTTCGACGCCACCACGGTGATCGGTTTCGTCGACCGCTTGCAGC-GGA >> 2982505
3301720 << **A**G*C*CT****A**GC***************TCCT***G*GGGC**GCG***C*T*C**CG***-**T**G << 3301647
2982506 >> TGCTCGCGGCGCTGGTCACCGATCCGGGCCGGCCCGTGCACGAGGTGGAGTTGCT-GACCGCCGCCGAACGCGAT >> 2982579
3301646 << *******G***T*G*G*C**T*G***TG*T*AC*C**GCC***AG**G*TG****G****-*C******A*-*-* << 3301575
2982580 >> GCCGTGCTGGTGG-GGTGGAACGCCACCGATCACGCGCTGCCCGCCGGCGACACGCTGGTCTCGCTGTTCG-GCC >> 2982652
3301575 << -***CG****G**G****GC-**C*C****CC-*-**T--**C*****AG**-*A-*GGG*CT*C******T*C* << 3301508
2982653 >> GCGCCGTGC-GCGCCCACGCCGACGCGCCCGCGGTGGAGTTCGAGGGC-CGGTCGCTGACCTACGCCGAGTTCGC >> 2982725
3301507 << *-**C****T**T*CTG**C**C-***CA****G**GCG*C*******T*G*TC*-*G*******T**G*G***T << 3301436
2982726 >> GGCGCGGGTG-AACCGGTTGGCCCGCTGGCTGATCGCCCGCGGTGTCGGCCCGGAGACGGC-GGTGG-GCTTGCG >> 2982797
3301435 << G-***A**TGG******G****C**CCA********TC*T***G*************-*G*A***G*G***-*-* << 3301365
2982798 >> GATGCGCC-GCTCCCTGGACCAGGTGACCGCGATGTACGCCGTG-C-ACGCCGCGGGCGGAGCGTACGTGCCGAT >> 2982869
3301364 << *G*A*T**G*C**CC****TAG****C*****C**GAC**C***C*G*T*T*-***-**GC****A********* << 3301292
2982870 >> CGATCCGGATCTGCCCG-CCGACCGGATCGACTACATGCTGGCCACCGCCGCTCCCGTGGTGGTGCTCAC >> 2982938
3301291 << *******G-***T****C****C*******G*G*****A*G***CTAA***C*C*C**GG***C****** << 3301223
Statistics
Matches: 4703 (67.47%), Mismatches: 1725 (24.75%), Indels: 542 (7.78%)
ATpairs: 23.39%, CGpairs: 76.61%, GTpairs: 0.00%
:i = 3301468
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6284137
highcenter: 6284185
testcenter: 6284161
im3: 58.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3303314 center: 6277870 interval size: 300 g: 3
Alignment explanation
Indices: 2973559--2974725,3303148--3304305 Loop: 328422 Score: 397
Left Length: 1167 Right Length: 1158 Average length: 1162.5
3 most common centers (desc): 6277864 6277858 6277870
2973549 >> (LF) CGACACCACC
3304315 << (RF) GTGGCTAGAC
2973559 >> GCGTACGTGATCTACACCTCCGGTTCGACCGGAACGCCGAAGGCCGT-GCAGGTCTCCCACCGTGGCCTGGCGAA >> 2973632
3304305 << **G***G**C**********C**G********C**T*******C***G**-****T*****CGG******A**** << 3304232
2973633 >> TCTCGTCGCGGCCCAGGCCGAT-GCCTTCGCGGTGGACACCGCGTCGGTCGTGCTGCAAGTGGCGTCACCGGGTT >> 2973706
3304231 << GA***G**TG*TT*A*GC***GG*C**-**TGTGGTG*G***TA***GC*TGG*****AA*G**GT*G***T*G* << 3304158
2973707 >> TCGACGCGTGCG-TGTCGGAGCTGCTGCTGGCGCACAGCCGCGGTGCGTGCCTGTCGATC-GCACCGCCGCAGGT >> 2973779
3304157 << ********-***T**GA***A***********G*A*C*T*G***G**GTG*T**CA****A**-*****GC**** << 3304085
2973780 >> CTACGGCGG-GTCGGAGCTCGAGGACCTGATCGGCCGCGAGCACATCACCCACGCGATCATCACGCCGTCCGTGC >> 2973853
3304084 << C********G*T**T*-****GG**T***G*C*TC**C**T*CC*****C*****GA*******G***C***G** << 3304011
2973854 >> TCGGC-ACGATGGCACCCG-ATCGG-GTGCCCT-C-GCTGGC-CACGGTC-GC-GGTCGTGGGCGAGGCGACCGG >> 2973920
3304010 << *-***C**G**G*-***C*G*C***A*C**C**C*G**TGGAC*C***T*A*TA*****CG**A******GA*** << 3303938
2973921 >> CGCCGACCTCGTGCGGCGCTGGGGAGCGGGTCGTCGCCTGCTGAACCACTACGGACCGACCGAGACCACGATCTG >> 2973995
3303937 << TG****T**C***TGG*******GG*TG**G***********G***CG*********G***************CA << 3303863
2973996 >> GGCGACCGGCTCGACCGAACTG-CGGCCCGGCGACCAGGTCACCATCGGCGCGCCGATCCCCGGCACGTCGGTGC >> 2974069
3303862 << ***G***GAC***C*CGGC***C***A*-****C**G*T***********T*G*A*C*C*C***CC**-***CG* << 3303790
2974070 >> G-GGTACTCGACGCCTGGCTGCGGCCCGTGCCGGTGGGCGTCACCGGTGAACTCTACGTCGGCGGGCCGGGCCTG >> 2974143
3303789 << *A***C*******TCG*******A**C********G******G****G**C******G***GC*********C** << 3303715
2974144 >> GCCCGCGGCTACCACGAGCGGC-CGGGCCTGACCGCGACACGTTTCGTCGCCGA-CC---CGGACCGGCCCGGCG >> 2974213
3303714 << **C*TC*******AC**G***AT*****-****C***C*C**G***********A**AAA***A***-*****C* << 3303642
2974214 >> AACGGATCTACCGCACCGGCGACGCGGTCCGCTGGGTACGCGGCCGCGACGGCCTGGAACTGGCCTACCTGGGCC >> 2974288
3303641 << GC*****C***********A****A***C******--***-*-*-*-***G**--*-******AC********** << 3303576
2974289 >> GCAACGACCAGCAGGTCAAGATCCACGGTCTGCGGATCGAGCCGGGCGAGATCGACGCC-CACCTGGCCCGCCGA >> 2974362
3303575 << ***C****AAG*****C*****C*C***CA*G**G*******AG*********TC****C***-*GT**-***G* << 3303503
2974363 >> CCC-GCCGTCGCGCGGGTCGCC-A--CCGTGGATCAGCGCGGTCC-CGCCGGGGAACCGGTGCTGGTGTCCTACG >> 2974432
3303502 << ***G*T*T**-***A--*****G*AT***T**AC*-*****T**TT**CA*GG**-****--*****G******* << 3303435
2974433 >> TCGTCCCGGCGGCCGGCGCCGAACTGGACGTGACGGCGCTGCGCGCGGATCTGGAACGTGCG-CT-CGCGCACTA >> 2974505
3303434 << **--*T-***GT***TA**CG*G**G***T*GC*G***C*******GG*G**G*GC-*GG**C**C*G***C*-* << 3303365
2974506 >> CATGATCCCCGCC-GCGATCGTGGTACTCGACGACCTGCCGCTCACTCCGGTCGGCAAGGTCGATCGGAAAGCGT >> 2974579
3303364 << ****C*C*****CT**-***TGG**C**C***GCCT*G*****C**G************G****G***CGG**GG << 3303291
2974580 >> TGCGCG--CCAG-GCCGGTCCGAGCCCGGCAGGAGTCGGGCCGGCCGCCCGCCACGCCGGCCGAACAGACCGTGG >> 2974651
3303290 << ***G**TT**G*T**T**-***-**C****G*-**--**T*CG**T-****TC**GC**T******C*GAC**G* << 3303222
2974652 >> CGCGGCTGTTCGCCGAGGTGCTCCAGCTCGACACCGTCACGGCCGACAGCAACTTCTTCACCCTCGGCGGCGAC >> 2974725
3303221 << *****C**T*C*C****G*****C*GC****CCTA**CGC*******CG*C*A******C**T********T** << 3303148
Statistics
Matches: 828 (69.06%), Mismatches: 298 (24.85%), Indels: 73 (6.09%)
ATpairs: 24.76%, CGpairs: 75.24%, GTpairs: 0.00%
:i = 3303314
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6277846
highcenter: 6277894
testcenter: 6277870
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3303566 center: 6273295 interval size: 300 g: 3
Alignment explanation
Indices: 2968569--2970182,3303119--3304738 Loop: 332936 Score: 423
Left Length: 1614 Right Length: 1620 Average length: 1617.0
3 most common centers (desc): 6273295 6273301 6273286
2968559 >> (LF) CGGCCGCGCG
3304748 << (RF) GGTGGCACCG
2968569 >> CCGCGACCCC-GCCGCCACCGCGATCATCGCCCCCGACG-CG--AC-G-G-TGACCTACGGCGAGCTCGACCGCG >> 2968636
3304738 << *********CT*****-******C*CC*****CA**CC*T**CG**G*G*G***C****G****A********-* << 3304666
2968637 >> AGTCCGC-CCGGCTGGCCCG-GCGGCTCGTCGCACTCGGGTGCGG-GCCGGAGACGGCCGTGGGGATCGTGCTGC >> 2968708
3304665 << G*GC**TT****A****C**A***-**CT****G*C***AGA***A**C**A***G*CT-*G*G*G***C****T << 3304593
2968709 >> GCCGGTCGGTGGAATCGGTCCTCGCGGCGTGGGCGGTCGCGC-GATGCGGGGCGGCGATCGTGCAGATCGACCCG >> 2968782
3304592 << G***G***T*G**A**G**C***T*G**GGAG**G*****GTT**G-***G**G**GA****G*G*C******** << 3304519
2968783 >> GCGTATCCGGCCGCGCGCAT-CGAGCACATGATCGCCGACAGCGGC-GCGCGGACCGTGCTCACGGTGGCCGAGC >> 2968855
3304518 << TT***G*******T***CC*C**-*******G**T*****AG****T****GGA*C**-*****GGC******** << 3304446
2968856 >> ACCGGGATCGGGT-GCCCGA-CGGCGTGGCCGC---G-CTGGTGCTGGACGACCCGGCCACCCGCGCGGCGCTCG >> 2968924
3304445 << **CGG**T***G*G****GGC*G**G*G*T***GGA*C********G*****A******AA******G*T***** << 3304371
2968925 >> CGGGCACCGCCGACGGGCCCGTCGGCGACGACGAGCGGACCCG-CCCGCTGCGTCCGGCCGACACGGCGTATCTG >> 2968998
3304370 << TG***AT*T***G**TG***G*CG***G********G******C*****G***CA*T-****AGA***G**G*** << 3304297
2968999 >> ACCTACACCTCCGGCTCCACCGGGACGCCGAAGGGTGT-GCAGGTGACCCATGCCGGGCTGGCCGGGCTGATCGC >> 2969072
3304296 << CA*********C*****C********T********G**G**-***G*****G*****G***A*-*TT**--**** << 3304226
2969073 >> CGAC---C-GCGTCG-CCGCCTACGGCATGGCCGCGGATTCGCGGGTG-TCCTATGCGCTCTCGCCCAGCTTCGA >> 2969141
3304225 << ****CTT*A***-**T***C**-**T**GGT**G*G********GTGGG*C*TA*A***-*T*G**C******** << 3304154
2969142 >> CGCCTCG---CTGGAACAGTTCCTGACCTGCTTCGCCAGCGGCGCCGCGCTGGTGGTGGTGCCC-CCGGAGATCA >> 2969212
3304153 << ***CC**TAC*****A*A*G*C***C**--**GC*T*G-*******T*GT*****T*G-*****C**G***C*CA << 3304083
2969213 >> TCGGCGGCGAAGGGCTCACCCGGCTGCTCGCCCAGGCGCGCGTCACCCACCTGACCCTCACCCCCGCCATGCTGG >> 2969287
3304082 << T*********G*TT***C**CTT*****C*TC*C**TT**CT****C***CGGAA*T*******C***CG***** << 3304008
2969288 >> CCACGGTCGATC--C--CGAAC--CGCTGACGGAACTGCGCGCGGTCGTGGTCGGGGGCGACGT-CT-GCCCGCC >> 2969354
3304007 << *C**GT****G*CC*TC**CACCC*****G**G*G*******CTG*CT*******G**A**C*GC**G*CT*-** << 3303934
2969355 >> GAACGTCGTGGAACGCTGGACCG--GGCCGTGGGCGTTGTTGAACGAATACGGGCCCACCGAGGCGAC---CGTG >> 2969424
3303933 << ****-*C***TGG******C***TG******G*G*-*-*G*G****GG*****T*********T*G**CTA**** << 3303862
2969425 >> ACCGCCGCGTGCGCGCGCCTG-CGGCC--CGGCCACGACCGCACCGTGGGCGGACCGATCCGCGGGGTCGCGG-C >> 2969495
3303861 << C**T**GA**GC****GC***C***A*CC*****-***A*--***T*G***TGG*A*C*C*******-*****C* << 3303791
2969496 >> GATGGTGCTCGACCGGACCCTGCAACCGGTGCCGCCGGGCACGCCGGGGGAGCTGTATCTGGCCGGGCCGGGCCT >> 2969570
3303790 << GC***********CT*GCC****CA*********CAG***CAG**G**G*****G**G**G**C*********C* << 3303716
2969571 >> GGCGCGCGGCTACCGGCACCGGGTCGGCGAGACCGCGGCCCGATTCGTCGCCGACCCGTACGGTGCGCCGGGGGA >> 2969645
3303715 << *****TC*******A*C*****AT***CGA***C*****C**G***********A**A*A****G****G****G << 3303641
2969646 >> GCGGATGTACCGCACCGGTGATCTCGCGCGGTGGCGCACCGACAGCGCCGAGCCCGAGCTGGAACTGTTGGGCCG >> 2969720
3303640 << *********************-*--*A*-*-**-***AC-***C***--**G*C***T****ACATGG******* << 3303575
2969721 >> CAGCGACTTCCAGGTCAAGATCCGCGGGTACCGGATCGAGCCGGGCGAGATCGACGCCGCTCTGACCGGGCACGA >> 2969795
3303574 << ***************C*****C*******A***G*******AG*********TC******T**G****GG***GG << 3303500
2969796 >> GCACGTCGAGCTGTCGGTGACGGTGCCG-GTGC-CGAACAAGTCGG-GCACGACCGTACTGGCCTCCTACGTGGT >> 2969867
3303499 << GC**T**G-***-***GGG*ATGG*TC*A*G**C***A***--***A**-******C-****A*********GGT << 3303431
2969868 >> GCCGGTGCGCGGTCACCGCCTCGATGTCGCCGAACTCCAGCGGTTCGCC-CGCGCGACG-CTGCCGCCGCACATG >> 2969940
3303430 << *C*GTG-**TA*-*C*T-******GT******GCC*C*-***GG-*T**A****CGG**C*****GC******** << 3303361
2969941 >> GTGCCGACGGTGC-TGATGCCGCTGGAGAGCCTGCCGGTCAACGCCTTCGGCAAGGTGGACCGCCGGGCGCTGCC >> 2970014
3303360 << *****GC**T-**T*G*GGCA******GG*CT*G***G*C*G*G*CC********G*G*****CCGG**G***** << 3303287
2970015 >> GGAACCGGACTTCGGTGCCGTGC-CGGTCG-GG--CGTCG-ACCGGAGACGCCGCGGGAACGGATCGTGGCGGAG >> 2970084
3303286 << G*****G**C--*T*-****-**C***G**T**CT**-**G***G*****GC**TGG******G*C**G***GC* << 3303217
2970085 >> CTGTTCTCGGAGGTGCTCGGCGTGCCCGAGGT-CGGCGCCGACGACAGCTTCTTCGCACTGGGTGGCGACA-GCA >> 2970157
3303216 << C**T*CCCG***G******T***GCTC**A**C***-*******G*CTA********GT*G**G***T**AG**- << 3303144
2970158 >> TCCTGTCGATCCGGCTGGTGGCACG >> 2970182
3303143 << *C***C***G**T******G**C** << 3303119
Statistics
Matches: 1136 (67.82%), Mismatches: 423 (25.25%), Indels: 116 (6.93%)
ATpairs: 23.24%, CGpairs: 76.76%, GTpairs: 0.00%
:i = 3303566
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 6273271
highcenter: 6273319
testcenter: 6273295
im3: 30.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3303579 center: 6287350 interval size: 300 g: 3
Alignment explanation
Indices: 2977242--2984209,3303141--3310165 Loop: 318931 Score: 1242
Left Length: 6968 Right Length: 7025 Average length: 6996.5
3 most common centers (desc): 6287380 6287377 6287392
2977232 >> (LF) TGGCGGCGGT
3310175 << (RF) GGTCTTGGAT
2977242 >> CGTGCTCGACACCTGGCTGCGGCCTGCGCCGATCGGTGTCGTGGGTGAGCTGTACCTGTTCGGCGCCGGGGTCGC >> 2977316
3310165 << **********C*CC*G*****G**C*A****GG***G**C**G**G**T**G******CG*****ACGT*G*C** << 3310091
2977317 >> GGCCGGCTACGCGGGCAGGCGCGGGCTGACCGCGGCCCGATTCGTGGCCTGCCCGTTCGACGGCGG--C-CGCAT >> 2977388
3310090 << GGC*******GA******T*G*GT*********G*TT**C*********CT***G***TG*GG***AC*C***** << 3310016
2977389 >> GTACCGCACCGGCGACCT-G-G--TC--CGGCGC-A-ACCG-G--G-A---C---GGCGCCCTCGAATTCGTGGG >> 2977445
3310015 << ***A********C**A**G*G*GC*ACC****G*C*A****G*GG*C*CCT*GTG****A***C****T*G**** << 3309941
2977446 >> GCGCAACGATTTCCAGGTGAAGATCCGCGGCACCCGCGTGGAGCTGGGCGAGATCGATGCGGCCCTGGCGGCGCA >> 2977520
3309940 << G****G************G************GTC***T*G**T**G***********C*****C***GA***GC* << 3309866
2977521 >> GGACGCGG-TGGCGTTCGCGGTGA-CG-GTCCCGCGCCGGATCGG-CGGGGGAGCGGTGGTGCCGGTGTCGTACG >> 2977591
3309865 << G**-****C*****GCC******AC**A*C*****GC***G-**GT*G**G**-**T-*G**CA**-*-*-**** << 3309798
2977592 >> TGGTGCCCGCGGCGGGTGCCGCCGT---CTCCGG-GACGGAGCTGCGCGGGGCGCTG-GCCGACGAGCTCCCCGC >> 2977661
3309797 << GG***C****TG*G**G***T****CCT*T***GG****A-***-******T*--**G****GT*-***C****C << 3309728
2977662 >> CTACATGGTCCCGGCGGCGGTCGTGGTGCTCGACGAGGTGCCGCTGACGGCCAACGGCAAGCTCGACCGGGACGC >> 2977736
3309727 << *********C**G****A*G*CT***G***C******G*****A***TG************T*******GT*C** << 3309653
2977737 >> GCTGCCCGAACCCGCCT-TCGCCGCACGGGAATACCGG-G-CC-CCGTC-G---AC-GTGGTCGGAAGCGGCGGT >> 2977802
3309652 << T*******G-*****TCG**-***CA**GGCGC*****G*C**A*****G*GCG**G*T*****T*GT**-**T* << 3309581
2977803 >> CGCGGCCGCGTTCGCGGAGGTGCTCGGCCTCGACCGGGTGGGCGCCGACGACGACTTCTTCGCCCTCGGCGGTGA >> 2977877
3309580 << C**G**CTAG*****G**********G*******CT*T*G**CTA***C****C********T*********GT* << 3309506
2977878 >> CTCCCTGAGTGCCGCGT-CGGTGGCGGCGCGCATCGGCGCGGCGATGAACACGACCGTGCCGGTACGGGCGGTGT >> 2977951
3309505 << ***C**G*AG*****GGC**GG*A****TC*-***TT*T*G*TAG*GCC*C**C*CG*GT*GT*G**G*TGG*** << 3309432
2977952 >> TCGACTTCCCGACCGTGGCCGCCCTGGCCACGCACGCCGCGTCGCTGGGCGGCGG--GCAGCGG-GTCGCGC-TG >> 2978022
3309431 << ****CCG**********A****C******CT**CC*A**-*G***G*A**TG**TAG**G**GGG*G*****G** << 3309358
2978023 >> A-CCGCGGTGGCCCGCCCGGAGCGGCTGCCGTTGTCGCTGGCCCAACAGCGGATGTGGTTCCTGAACCGGTTCGA >> 2978096
3309357 << CA**G**GGG**TC*****G-***GT*G***G*G****G***C**C******G*****T****G*****A***** << 3309284
2978097 >> GCCGGACTCGGCGGCCTACAACGTCCCGGTGCTGCTGCGGCTGT-CGGGCCGATTGGATCCCGCCGCGCTGGCG- >> 2978171
3309283 << GCT*G**C*G**G*********T*C***G**CG******G***CT***ACA*G*G*-*G*T**********-**G << 3309211
2978170 >> GCCGCCCTACGGGATGTGATGGCTCGGCACGAGGTGTTGCGCACCGTCTATCCCGA-GACCGACGGG-GAACCGC >> 2978242
3309210 << **C*CC**GTAG**G**G**G*TG*********TCGG********TG**AG*****T*C**--***TG*CG***A << 3309138
2978243 >> GGCAGGTGATCCTCGACGAACCGGAGATCGCCCTGGAA-TCGGTGCGCGTCGATCCGGCCGCCGTCGAGGACAC- >> 2978317
3309137 << TA***G******T*GGC*G*C*G**G**AG*C***TGGG***T*G**-**C**CC*GT***C**G***A*A***G << 3309064
2978316 >> GA--TCG--GC-GAGTTCGTGCGCCGCGGCTTCGACGTGACCACGCGGGTACCGCTGCGGGTCGGCCTCTTCGAA >> 2978385
3309063 << *GCG***GG**G**T****GGC**AT*********AG**GC**TG*T**GC***C*******-***C-**CA*CA << 3308991
2978386 >> CTCGCGGGCACGACCGGAGAGTTCCTGCTGGCGCTGGTGGTGCACCACATC-GCGGGGGACGGCCGGTCGATGGG >> 2978459
3308990 << *CTG***T*-**-*-*G**GGT-*C****G*A*******G***********A****A*-*****A****G**G*G << 3308921
2978460 >> CCCGCTGGCGCGCGACGTGATGACCGCC-T-ACGCCGCCCGGACGGCCGG-ACAGGCGCCGGCCTGGGCGCCGCT >> 2978531
3308920 << C*******AG******G**C**C*****C*C***--******C**GTC**C**-*******GCT***T******* << 3308849
2978532 >> GCCGGTGCAGTACGCCGACTACGCCCTGTGGCAGCGCGCGGTGCTCGGC-ACGGCCGAGGATCCCGGGTCGCTGA >> 2978605
3308848 << *********T**********A*T*****************G********C***TC-*GG**-****GTGT**C*C << 3308776
2978606 >> TGTCGGC-G-CAACTGGCGTTCTGGCGCGCCACCCTCGCGGGCGC-GCCCGACCGCCTCGAGCTGCCCACCGACC >> 2978677
3308775 << G-*****T*C**C*****G*T******AT**C*C**C**G**-**A********TC*****G******GAC**** << 3308703
2978678 >> GGCCCCGCCCGCCGGTGGCGTCGCTGTCG-GGCGC-GCGGATGCCGGTCGAGATCGGCGCCGACCTGCACGCACG >> 2978750
3308702 << *G*****C****A*G-****CTG*C*-**T*****T****C***C*A**TGG***GG*******TGG*CC**-** << 3308631
2978751 >> CCT-GCTGGAACTGGCCCGGTCGCACGGCACCTC-GC-TGTTCATGGTGCTGCACGCGGCACTGGCGGTGGTGCT >> 2978822
3308630 << **CG*****GCC****--**G**C***GCC*C**T**G**********************C*****GTGGG**** << 3308558
2978823 >> CGCACGCGCCAGCGGCAGCGACGACGTCGTGATCGGCACCCCGGTCGCGGGCCGCGGCGAACCGGGCCTCGACGA >> 2978897
3308557 << C**C**CAAC****GC***TC****T***GGC*C*********T***********AGC**A****GC**C***** << 3308483
2978898 >> GCTGGTCGGCATGTTCGTCAACACCCTGGCGCTGCGCACGCCGCTCGACGGCGGTGAGCCG--TTCGCGGACCTG >> 2978970
3308482 << *****************************A******C**GCT*T*****GG**G-*-****CG****T*G*CC*A << 3308410
2978971 >> CTCGCCCGCGCC-CGCGAGACGGATCTGCGCGCCTTCGAGCACGCGGACGTGCCGTTCGAACGCGTCGTCGAGGA >> 2979044
3308409 << ****T*-***CAC********G**G**GTT********GGT****G*****G********C**CA*C**C****- << 3308337
2979045 >> TC-TGAACCCGGACCGCTCGGCCCCGCACCATCCGGTGTTCCAGGTGATGCTGGCCTGGCAGAACCTGGCCGACA >> 2979118
3308336 << **C*G*****G**C******T**C*G*CC******G*****************A***T-*-**G*CG*G**GCC* << 3308264
2979119 >> CCCAG-G-T-GAGCCTGCCGGATGTGCAGGTGTCCCTG-GCCGAGGC-CGACACCGGGATCTCCCAGTTCGACCT >> 2979188
3308263 << **AC*G*G*G****-****G*CG**-**GG-*G*CTC*A**A*GG**A*****C**G*C**C**T********** << 3308192
2979189 >> GCAATGGGTCGTATCGGATTCCTATGGGAAAGGAGGTGTGGCAGAGGGCATTTC-CGGAATGCTCATGTATGCGC >> 2979262
3308191 << ***GG---***-*--**-*C*--*G*TG**G*G-**GG-*T***G*G**ACCT*C*G****--**C*G*****GT << 3308130
2979263 >> GTGAGCTGTTCGACCCGGCAACGGTGGCGGGATTCGGACGACGGCTGGTGCGAGTGCTGGAAGCGG---TCGCCG >> 2979334
3308129 << GG**GC*T*****A*TG**G*****G*T*TGG****GG**G**GA*G***TGG*****G**G**G*GGG****** << 3308055
2979335 >> ACGATCCGTCGGTCTCGGTCGGGGAAATCGACTGGCTGGACG-CGGACGAGCGCTCGCACCTGCTCGCGC-GCAC >> 2979407
3308055 << -**G-***G**GC*-*******A**G******GA***G****T*G*-****AA*C*GT*A***C*CG**AA**-* << 3307985
2979408 >> CGGCGCAACACCCGCGCCGACGGTGCTGCTGCCGGAGGTGTTCGACGCGGCGGTGCGCAGCGCAGGCGCGG-GT- >> 2979482
3307984 << **G***CG*GC*C*AG***G**T*GTG****C**GC*T**G**TG**T*T*G*G-**T*-***CA**G**TG*GG << 3307912
2979481 >> GTCGCCGTCGTGTCCGGGCAGACGCGGCTG-ACCTACGCCGAACTCGACGAACGGTCGAATCGGCTGGCGCGCCA >> 2979554
3307911 << *****C**-*G*G*TGGT*C*C*A**T*TGG******GCC**C********C**GC*G**G**G********CCA << 3307838
2979555 >> CCTGATCCGGCGCGGCGCCGGACCCGAGCGCACCGTGTTGGTTGCGGTGGCGCGCTCGGTGGAGTCGGTGGTGGC >> 2979629
3307837 << C**G***CGG*T***A****GC**C***TG*CAC***CG***C**GT**G*****CCGG*G**GC**T*GTGG** << 3307763
2979630 >> GTGGTGGGCCGTGGTGAAGACCGGCGCGGCCTATGTCCCGGTCGACCCCGGGTATCCCGCGG-GCAGGATCGAGC >> 2979703
3307762 << *TAG*****C**G*GG********A**G**C**G**C**G***********G**G**C*C**T**-******G** << 3307689
2979704 >> AGATGGTGACGGATTCCGGCGCGACGCTGGGGCTGACCGTGGCCGCGGTGCGCGACCGGT-TGCCCGC-TG-CCG >> 2979775
3307688 << *G***G*GC*G************GA***G**G******G**G***TT-***GAAC***GGG****C*TT**C*** << 3307615
2979776 >> TCGAGT----GGGT-CGTG-CTC--G-ATGCC--G--AC-GCCCG-TGC-CGACGACACCGC--C-G-CG-CGGC >> 2979829
3307614 << T***GGTGGG***CT**CGT***GG*C*GT**GG*CC**A*C*A*C***A**C**-*C***CTT*A*T*GA**** << 3307541
2979831 >> -T-CG-CGGCGC-T-GCCGGGCGGCCGGATCGGCGACGCCGAACGGCTGCGCCCGCTGCG-GCCGGCGAACACCG >> 2979898
3307540 << G*C**T*T****G*G****--*******-**TG*********G**GTC**A*********G*A**-**G*AG*C* << 3307470
2979899 >> CGTACGTCGTCTTCACCTCCGGCTCCACCGGCGTGCCGAAAGGTGTCGCGGTCACCCACGCGGGCATCGCCGATT >> 2979973
3307469 << *****G*CT***T************C**C***TGG**G**C*GC****A****************G*C***--*G << 3307397
2979974 >> TCCTGGCCGGGCAGCGCGGATACGGC-GT-CGGC--C-CCGATTC-GCGGGTGC--TGCACTTCGCCTCCCCGTC >> 2980040
3307396 << C*-*G***GT-*-*T**T***G*T**A**A****TA*T****GT*G**GG*GT*GG********A****T**GTC << 3307325
2980041 >> CTTCGACGCCTCGCTGCTCGAGATCCTGTTGGCGGTCGGGG-GCGCAGCGGCGCTGGTGATCGCGCCCACCGAGC >> 2980114
3307324 << *************C****C**TG*C***G****GA***G**G*C**-**GT*GT****G*****G**CC***CG* << 3307251
2980115 >> TGTACGGGGGTACGGAACTGGGCGAGTTCCTGCG-GACGCAGCGGGTGACGCACGCCTTCGTGACCCCGGCGGCA >> 2980188
3307250 << *******G**CGC********G***GG*C*****G*G**T*-**************C***T*G**C**G*****C << 3307177
2980189 >> CTGGCCTCCGTCGACCCGGCC-GGGCTCG-ACGACCTGCGGGTGGTGCT-GTCCGGCGGCGACGAGGTGCCCGCG >> 2980260
3307176 << *****CT*C**-*-****T*CT***C*A*G****A***CGG*G****T*G***-********C*G*-***A**CT << 3307106
2980262 >> -GACCTGGTGCGCCGC-TGGACCG-GCACCGACGACGCGGGCGTCCGGGAGTTCCGGGTGCTCTACGGCCCGACC >> 2980332
3307105 << G**C*****-**T*T*G*******A**C**-**--***TA**T-*T---*---*T---**-*--********A*C << 3307048
2980333 >> GAGGCCACCATCGTCGCGACCGCGGTCGA-CCGCGGGCAGCCGACCGCCCGGTCCTGCATCGGCACGCCGGTGCC >> 2980406
3307047 << *********C***G***G*****GAG*T*C***TA**AC****CA*TC*******G**-*C**AGA********C << 3306974
2980407 >> GGGGATGCGGAC-GCTGGTGCTCGACGCCCGCCTGCAGCCGGTGCCGGTCGGGGTGGC-GGGCGAGCTGTACCTG >> 2980479
3306973 << G**G*****-**A*A*G*****C***GCC**C****CA*********G-****GTG**G***A************ << 3306901
2980480 >> GCGGGCCCGGGGCTGGCACGCGGCTACCTGGATCGCCCCGGCACCAGCGCGGGCCGGTTCGTGGCCTGCCCGTAC >> 2980554
3306900 << A*G*****G**G*****G***A*******G*CG***TT****GAC*G****GTT**G***GG****TT******* << 3306826
2980555 >> GCCGGGCCCGGCGAGCGCATGTACCGCACCGGCGACCTGGTCC-GCTGGAACCGGGCGGG-GGCGCTGGAGTTCA >> 2980627
3306825 << *CCG***C***A*****C*****************A*****CCA*T*G**GC*G*-****G***-***GCG***G << 3306753
2980628 >> TGGGACGCAACGACTTCCAGGTCAAGGTGCGCGGCTTCCGGGTCGAACTGGGTGAGATCGACGCCGCGCTCACCG >> 2980702
3306752 << ****G**CCG****CT******C***T*G***********GT****C***G*G*********GTA*A***C-*C* << 3306679
2980703 >> CGCGTCCCGACGTCCGG-TACGCCGTGACCGTCCCGCGCCGCGACG-GCGCCG-GACCCGTCATGCTGGTCTCGT >> 2980774
3306678 << TG*GT****CC*CAC*GG*A***CG*G**C***CA**TACA*****T**T*CTG**C***-*C-*****G*C*** << 3306606
2980775 >> ACGTGGTGCCCGAGGCCGGGGCGCTGCCGGCCGAAGCCGACCTGCGCGCTGCCCTGACC-ACGGTGCTGCCGTCC >> 2980848
3306605 << *****TGGC****TG****G*A*CG**A*GC**CG******C***AC**GT**C**GC*C**G*-******GCC* << 3306532
2980849 >> TACATGGTGCCCGCCGCGGTGCTGATCCTCGACCGGATCCCGCTCTCACCCAACGGCAAACTGGATCGCCGCGCG >> 2980923
3306531 << *********************C*GC*C**C***CT*C*C***C*CT*C***AGC*****C**G******TTC*** << 3306457
2980924 >> TTGCCGGCTCCGGTGTT-GCAGCC-CAAGCG-ATTCCGGGCGCCGTCCACGCCGATCGAGGAGAT-CGTG-GCCG >> 2980993
3306456 << G****G**C********G**C***C*GC*C*G*CC***AG****--**C*T****-**A****GCC**C*A*C** << 3306385
2980994 >> G-GGTGTTCGCCGAGACGCTGGGGCTGACCGGACCGGTCGGCGCCGACGACGATTTCTTCGCCCTCGGCGGCAAC >> 2981067
3306384 << *G********TCG*GCA***G**G*-*G****AC*G--*********C***TCG*******T*T*********G* << 3306313
2981068 >> AGCCTGGTCGCGACCCGGGTCGCGGCGCGC-CTGGGTGCCGCGATCGACGC-GAGTGTGCCGGTACAGCTGATCT >> 2981140
3306312 << AGC***G*C**G*****AG**T*G**-***A***GTGT***T*A***CC**G***G-*******C*C*CT***** << 3306240
2981141 >> TCGAGGCGCCGACCGTCGCGACTCTGGCCGCCCGGGCGGAATCGCACGCCGA-CACCGGCCGGGTGGCGCTGACC >> 2981214
3306239 << ****************C**GCCCC*****T*A**GGA**CCC**C-*****GC***CGT***G**AG****G*** << 3306166
2981215 >> GCG---CAGCCGCGGCCCGAGCGGGTGCCGTTGTCGTACGCC-CAGCAGCGCATGTGGTTCCTCAACCGCTTCGA >> 2981285
3306165 << ***CAC*C******A**C*G****T*G***G*****GA-***C********CG*********************G << 3306092
2981286 >> ACCCGAGTCGGCCGCCTACAGCATTCCCGT-CGTGATCCGGTTGTCCGGCAGC-CTCGAT-CGCGACGCCCTGCG >> 2981357
3306091 << G********GTC********T***-*C***A***GG*C**GT*GCT***C-**C*****GT**-*A***C***** << 3306020
2981358 >> CGCCGCGCTCGACGACGTGGTCGGCCGCCACGAGATCCTGCGCACCGTCTACCCGCTGGT-GGCGGGCGAGCCGG >> 2981431
3306019 << *********C*G*******T***G***C*****TC*C********C**C******CT**TG****G*C*A***GT << 3305945
2981432 >> TGCAGGTCGTGCTGCCCGTGGCGGAGGCGGC-CGCGGCGCCCGAGGTCGTC--CGG-GTCGACCGGGACGCCGTG >> 2981502
3305944 << G-**************CTGG***GCG****AC*G**G**A*-***T*****CT**GG*T***T*G**G****G-* << 3305873
2981503 >> GCCGAGGCGGTGCGGGCGTTC-CTCGCCACCGTGTTCGATGTGACCACCCAGCCACCCTTCCGGGTC-C-GT-CT >> 2981573
3305873 << -*-***GT*G**CGG***G**C*G***CC*T*G-*****GG*G***CACC*GT*G**CG****GG**T*G**C** << 3305801
2981574 >> GTTCGACCTCGGTGGGGACGAGTGGGTGCTGGCCGCCGCCATGCACCACATCGGCGGTGACGGCGCCTCGCTGGC >> 2981648
3305800 << *GC*-***C**GGGG**-**-*GTGG****G*CCTA**ACG****A*******G**GG******ACC******** << 3305729
2981649 >> ACCGCTGGCCCGCGACAT-GATGCTCGCCTACGAGGCGCGGTTGCT-CGGTCAGGCGCCGGCCTGGACGCCGCTG >> 2981721
3305728 << *******T********G*G*GG**-************G**-*G**CC***GCG***T**G*************** << 3305656
2981722 >> CCGGTGCAGTACGCCGACTACGCGATCTGGCAGCGCGCGGTGC-TCGGCGCGGAGGAGGATCCCG-CGTCGCTGC >> 2981794
3305655 << *******************A**C*A*C***********G-***G*C****TA*GG*GG**GC***T*TC**AC** << 3305582
2981795 >> TGCACGCGCAGATCGACTACTGGACC-ACCCACCTGGCCGATCTGCCCCCGCGGCTGGAGCTGCCGACCGACCGC >> 2981868
3305581 << C*C-***G***G*C*G*******GC*C**C*C*-*******G******CT*CTT***GG******GAT******C << 3305509
2981869 >> CCCCG-CCCGCCCGTGCAGTCCTATGCCGGGGCGAGCGTGCCGATC-CGGATCGGCGCCGAGTTGCACGC-CGAC >> 2981940
3305508 << *****A******-*TT*G*CTC***GT**G****AGC******A**C***AC*G-**T*G**G*G*C-**C**GC << 3305437
2981941 >> CTGGAACGTG-TGGCCCGCGAACACAACACGACCCTGTTCATGGTGTTCCACGCGGCGCTCGCGGCCACGCT-CG >> 2982013
3305436 << **G*G-**TGG*****T*C*GC**CCC*CAG*C*T***********G*C*C*A*******C****ACGA***C** << 3305363
2982015 >> -GCAGGCTGGCGGGCAC-CGACGACGTCGCCGTCGGCACCCCCTACGCCGGACGCGGCGA-ACCCCAGCTCGACG >> 2982085
3305362 << G**-**-*GT*G***CCC**-****T***A*T*******C**CCAC**C**G***TG***G***C*-******** << 3305292
2982086 >> ATCTGGTCGGCATGTTCGTCAACACCCTGGTCCTGCGCACCCGGATG-CGGCCGGG-CACGACTTTCGCCGAGCT >> 2982158
3305291 << *C***************************G*C*****CA**-*-*G*A**T**G**T*C**C*G***T***G*** << 3305219
2982159 >> GCT-CGCGCACGTCCGCGCGACCGATCTCGCCGCCTTCGGTCACGCCGACGTGCCGTTCGAGCGCCTGGTGCAGG >> 2982232
3305218 << ***C*****-**T***C*TG*T***T**C*****CT***GC**************G*****T**CC*****C*** << 3305145
2982233 >> AACTCAACCCCGTCCGCTCGCACGCGCACCACCCGCTGTTCCAGGTGATGCTGGCGTTCCAGAACC-TGGGTGCC >> 2982306
3305144 << *CT**CC**C-*T****CC*A--*****C*CC***C*GC*C*****GCG***GT*GC*****C**CC*GG*-*** << 3305074
2982307 >> ACCGACTT-CGCCTTGCCGGGACTGTCGGC-CACGGTCGCCGACGCCGACACCGGCACGTCGCTGTTCGACCTGC >> 2982379
3305073 << G**TG*G*C**C**CG*****-***C**GAC****G-**TC**TGA*****A**G*C**C*GTT**********C << 3305001
2982380 >> ACGTCACCGTCTCCGACAGCTACGACGCCGACGGCACGCCCGCGGGCATC-ACCGGCGGGATCTCCTACGCGACC >> 2982453
3305000 << *TG*CGC****C**--**-*---*******-***C--**A**-*--*-**C****G**TTA**CA******G*** << 3304939
2982454 >> GACCTGTTCGACGCCACCACGGT-GATCGGTTTCGTCG-ACCGCTTGCAGCGGATGCTCGCGGCGCTGGTCACCG >> 2982526
3304938 << **CA***********C****G**G**CTG*G*C-*G**C**C***CT*-******G**C**G***C***G*C*** << 3304866
2982527 >> ATCCGGGCCGGCCCG-TGCACGAGGTGGAGTTGCTGACCG-CCGCCGAACGCGATGCCGTGCTGGTGGGGTGGAA >> 2982599
3304865 << *G****-*C*AC***T*G*C***GT*G**GCG**CG****T****-*****-*--***GT-**--*G*G*GG--- << 3304802
2982600 >> CGCCACCGATCACGCG-CTGCC-CGCCGGCGACACGCTGGTCTCGCTG-TTCGGCCGCG-CCGTGCGCGCCC-AC >> 2982669
3304801 << **A*****CG*G**T*C*G***C*****-**-******G*-*C*TC*TG****-****GT*****-**G*C*C** << 3304732
2982670 >> GCCGACGCGC-CCGCGGTGGA-GT--TCGAGG--G-C-CGGTCGCTGACCTACGCCGAGTTCG-CGGCGCGGGTG >> 2982735
3304732 << -****CG***T*********AG*GGC***C**TG*C*T*G*-******C****GC***AG***T*G*-***G*G* << 3304660
2982736 >> AACCGGTTGGCCCGCTG-GCTGATCGCCCGCGGTGTCGGCCCGGA-GACGGCGGTGG-GCTTGCGGATGCGCCGC >> 2982807
3304659 << ***********C**-**G****************G****AC***CA***G*-*T*G*G***G*-**G**TG**** << 3304588
2982808 >> TCCCTGGAC-CAG-G-TGACCGCGATGTACGCCGT-GC-ACGCCGCGGGCGGAGCGTACGTGCCGATCGATCCGG >> 2982877
3304587 << **CT*G**AA*G*A*G*G*****GG*---******G**G*T*T*-***-**GG**G*A***G***C****G***T << 3304518
2982878 >> ATCTGCCCG-CCGACCGGAT-CG--AC-TAC--AT-G-CTG-GCCACCGCC---G--CTC-CCGTGGTGGTGCTC >> 2982936
3304517 << *C-*T****C****C***C*C**CG**T*C*AG*GG*T**GG*C**C****GAG*CA***T**GC**GG*T**T* << 3304444
2982937 >> ACCGCAC---TCGAC---GAC-C-TCGAT-C--TGGCGGGT-CT-G--GA-C-G-CCA-C-GCA--G-G-T-GAC >> 2982986
3304443 << C***T**CCG***G*GGG*G*C*G****GC*GG****A***C**G*TG**A*G*C**AA*G**CGG*T*G*G*** << 3304369
2982987 >> CG--AC---GCCGAGCGGCT-CGC-CC--CG--CT-AC--GGCCCGAC-C----ACC--T--GGCCTACATCCTG >> 2983038
3304368 << C*GA**TGG*****G*GG**C***C**CT**TC*GC**GG******G*C*CCAG***CT*GA*******G*CC*G << 3304294
2983039 >> TTCACCTCCGGATCCACCGGCCGGCCGAAGGGCGTGGCGATCCCGCACCGCGCGGTGGTGAACCAGGTGCGCTGG >> 2983113
3304293 << *T******C**G**C*****CTGT***********G***C**T*G***-**-***GG-**A-*C*TG*A***G*T << 3304223
2983114 >> CTCACCGACGCCTACGCGCTCGGC-CC-CGGC-GATGTG-GTGT--TGCAGAA-GACACCCGCCACCTTCGACGT >> 2983181
3304222 << *CT**A*-***CTG**-*****T*T**T*GG*G***AG*G*GTGGG****AAAG*G*****-*C*C********G << 3304151
2983182 >> GTCGGTGTGGGAGCTGTT-C-GGCAGTCTGGCGGTGGGCGCGCGGC-TGGTGATC-GCCCGCCCCGGCGGCCACA >> 2983252
3304150 << *C**T**GA***A***G*C*A***GG**C*T*GG-**-***-*TG*T********A********CT*CA*A-**C << 3304080
2983253 >> CCGACCCGGCCTACCTCGCGGAGGTCATCGC-CGCGCACGGCGTGACGATCACCTCGTTCGTGCCGTCGATGCTC >> 2983326
3304079 << C**C*--*T*CT**-****G**TG*CG*C*TC**C*T****T-*G***GT*C***AGT**TGG***C*GCG***C << 3304009
2983327 >> GCGGCGTTCGCGCAGTCGGCACCGGCATCGGCGCTGC-GCTCGCTGCGGGCGCTGCTGGTGGCCGGTGAGGCGTT >> 2983400
3304008 << ***T*GT***T-*---*****C***--*C********G**T*-*****G*CT***T****G*C**********G* << 3303941
2983401 >> CGG-CGCGGACGTGGTGGCCGCAGTGCGACGGGTGCTGCCCGAGGTGGAACTGCACAACCTCTACGGACCGACCG >> 2983474
3303940 << ***T*G**T**-*****T**-*CG**C*G**TG-*--***-*---*G*G-****A****CG*********G**** << 3303876
2983475 >> AGTTCACCGTGCACGCGACCGCGCGCCCGGTCCGTGCCGGCGA-CACCGGCGCCG-TCCCGATGGGTACGCCGGT >> 2983547
3303875 << **TG***CT*GCAC**G***-*A-*A*C*GC***--*A****CA*CC****-***T**T*G**G**G**G*A*** << 3303806
2983548 >> GTGGAACGCCCGCGCCTACGTGCTCGACGCCCGGCTGCGGCCGGTCCCGCCCGGCGTGGTGGGGGAGCTGTATCT >> 2983622
3303805 << *G*GCCC**C**C***CAC**********TC********A*****C***CA******GGGG**G*****G**G** << 3303731
2983623 >> CGCCGGTGTCCAG-GTGGCGCGCGGATACCACGCCCGGCCCGGATTGACCGCCGAACGGTTCGTGCCCGACCCCT >> 2983696
3303730 << ***C**-*G*CC*G*******TC**G****AC*T****AT***CG****C**C*GC**G*****GC****A**A* << 3303657
2983697 >> ACGG---GCACGGTGAGCGGCTGTACCGAACCGGTGATCTGGTGCGCCGCAAC-CGCACCGGTGACCTGGAATAT >> 2983767
3303656 << A***AGG**G***C*G****T*******G********GC********A*C*GCC**C****G-**T****AC**G << 3303583
2983768 >> CTCGGCCGCACCGACTTCCAGGTGAAACTGCGCGGGTTGCGCATCGAACTCGGCGAAGTCGAG-GCCGTGCTCGC >> 2983841
3303582 << **C*******C***************CT**********G********C********CT**-**G****GT***T* << 3303509
2983842 >> CGAGCATCCCGGTGTCGCGCG-CGCCCTGGCGGCCGTGCGGTCCACCGGCGCGGCGGCCCGGCTGGTCGGCTACC >> 2983915
3303508 << **GG**G****TGT**-***AA*****TAT*G*TC*****GC*C*A*TT**CA**G*T**********AG****C << 3303435
2983916 >> TCGTGCCCGCCCCCGGCGCGACCCTCGATGTCGACGCCGTGCTGGCGCACGCCGCGGCGGAGCTGCCGGACTACA >> 2983990
3303434 << **GT*C**T**CTA*-***-***-****GT***G***C****CG**G***GA******GGC******G*GCG*** << 3303363
2983991 >> TGGTGCCCG-GTGCCGTGGTCGTGCTCGACAGCGTGCCGCTCACCCCG-TCGGGCAAGCTGGACCGCAACCGCC- >> 2984064
3303362 << *********G*T**T-*GTG******C***G*CT*G*****C******C****-******G*****CC-*****G << 3303291
2984063 >> TGCCGGAACCCGA-C-GTCGCGCACGGC-GCGTACCGGGAACCGGCGACCTGGCTGGAACGCGAGGTCGCGGAAG >> 2984134
3303290 << ****G********C*T*C*GC**C****G*T*CCT**G*G***G*T****CG*TGG*****CGA*******GCC* << 3303216
2984135 >> TCTTCGAGCACG-TGCTCGGTGTCGAGCGGGT-CGGCGCCGACGACGACTTCTACGCCCTGGGCGGCAACTCGCT >> 2984207
3303215 << *CT*C*-**CT*G******TG******CTA**C***-*******G***A****A****T*G************** << 3303143
2984208 >> GC >> 2984209
3303142 << ** << 3303141
Statistics
Matches: 4839 (66.50%), Mismatches: 1877 (25.79%), Indels: 561 (7.71%)
ATpairs: 23.87%, CGpairs: 76.13%, GTpairs: 0.00%
:i = 3303579
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 6287326
highcenter: 6287374
testcenter: 6287350
im3: 58.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3306729 center: 6281035 interval size: 300 g: 3
Alignment explanation
Indices: 2973543--2974344,3306691--3307489 Loop: 332346 Score: 219
Left Length: 802 Right Length: 799 Average length: 800.5
3 most common centers (desc): 6281029 6281035 6281030
2973533 >> (LF) CGGGCCCGGT
3307499 << (RF) CGTCCGAGGG
2973543 >> GCTGCCCGACAC-CA-CCG-CGTACGTGATCTACACCTCCGGTTCGACCGGAACGCCGAAGGCCGTGCAGGTCTC >> 2973614
3307489 << *****C**A*C*C**A***C*****G****************G*****C**G**G**G*****C**GCA****T* << 3307415
2973615 >> CCAC-CGTGGCCTGGCGAATCTCGTCGCGGCCCA-G-GCCGATGCCTTCGCGGT-GG-A-CACCG-CGTCGGTCG >> 2973682
3307414 << ****C**-********----****-*A**-****G*T**T***-**TC*A-*A*G**G*A*****T*TG**GG** << 3307349
2973683 >> TGC--TGCAAGTGGCGTCACCGGGTTTCGACGCGTGCGTGTCGGAGCTGCTGCTGGCGCACAGCCGCGGTGCGTG >> 2973755
3307348 << GT*GG****GA*GA*G*****GT*G********G*GC***GA***T***********GAA*-**C****-***GG << 3307276
2973757 >> -CC-TG-TCGATCGCACCGCCGCAGG-TCTACGGCGGGTCGGAGCTCGAGGACCTGATCGGCCGCGAGCACATCA >> 2973826
3307275 << T**T**C**-*****G***C*-*C*GG*C*********GC***T**C*GG******G*CG**CG***T*CCC*C* << 3307203
2973827 >> CCCACGCGATCATCACGCCGTCCGTGCTCGGC-ACGATGGCACCCGATCGGGTGCCCTCGCTGGCCACGGTCGCG >> 2973900
3307202 << *C******A**********GC*C*G***-***C***C**G*GCT***CC**A***T*CTA******C****CTAG << 3307129
2973901 >> GTCGTGGGCGAGGCGACCGGCGCCGACCTCGTGCGGCGC-TGGGGAGCGGGTCGTCGCCTGCTGAACCACTACGG >> 2973974
3307128 << ****CG*********AC*AGC*T***C**C**-**T*T*G***TGG*A*G*G*TG***T***TG***TAC***** << 3307055
2973975 >> ACCGACCGAGACCACGATCTGGGCGACCGGCTCGA--CCGAACTGCGGCCCGGCGACCAGGTCACCATCGGCGCG >> 2974047
3307054 << G***A*C***C****GC**CGG**G****G***G*TC****AC-*A****C*A*TC**-****G*CG*C**AGA* << 3306982
2974048 >> CCGATCCCCGGCACGTCGG-TGCGGGTACTCGAC-GCCTGGCTGCGGCCCGTGCCGGTGGGCGTCACCGG-TGAA >> 2974119
3306981 << ***C*C*C*****A*-**TG**AAG**C**C***G*C*-*******A**C******GG****T-*C****C***C << 3306910
2974120 >> CTCTACGTCGGCGGGCCGGGCCTGGCCCGCGGCTACCACGAGCGGCCG-GGCCTGACCGCGACACGTTTCGTCGC >> 2974193
3306909 << **C***G*CAG***G**G************A******A**-**G**TTG************GT***G***GGC** << 3306836
2974194 >> CGACCCGGACCGGC--C-CGGCGAACGGATCTACCGCACCGGCGACGCGGTCCGCTGGGTACGCGGCCGCGACGG >> 2974265
3306835 << *T*****A**C***CC*C***A**C*****C**************AGA***C-*-**T-*-**TG******--** << 3306767
2974266 >> CCTGGAACTGGCCTACCTGGGCCGCAACGACCAGCAGGTCAAGATCCACGGTCTGCGGATCGAGCCGGGCGAGAT >> 2974340
3306766 << *--**G-***GC**A*********CCG****C*G*****C*******C***GA*G**G*******A*G******* << 3306695
2974341 >> CGAC >> 2974344
3306694 << **** << 3306691
Statistics
Matches: 564 (68.03%), Mismatches: 208 (25.09%), Indels: 57 (6.88%)
ATpairs: 25.00%, CGpairs: 75.00%, GTpairs: 0.00%
:i = 3306729
tupleindex: 3
intervalindex: 1
matches_in_interval: 98.0000
lowcenter: 6281011
highcenter: 6281059
testcenter: 6281035
im3: 48.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3306911 center: 6276457 interval size: 300 g: 3
Alignment explanation
Indices: 2968932--2970139,3306327--3307526 Loop: 336187 Score: 277
Left Length: 1208 Right Length: 1200 Average length: 1204.0
3 most common centers (desc): 6276460 6276466 6276457
2968922 >> (LF) TCGCGGGCAC
3307536 << (RF) CTGTCGCGGA
2968932 >> CGCCGACGGGCCCGTCGGCGACGACGAGCGGACCCGCCCGCTGCGTCCGGC-CG-ACACGGCGTATCTGACCTAC >> 2969004
3307526 << *****-***-**C***TG*****G***G**G*CC*A*********-*-*A*C**G*AG*******G****A**** << 3307456
2969005 >> ACCTCCGGCTCCACCGGGACGCCGAAGGGTGTGCAGGTGACCCATGCCGGGCTGGCCGGGCTGATCGCCGACCGC >> 2969079
3307455 << ***********C**C**G**G**G****GC**GCA***G*****G**C**G******AG***GCG*GT***C*TC << 3307381
2969080 >> GTCGCCGCC-TACGGCATGGCCGCGGATTCGCGGGTGTCCTATGCG-CTC-TCGCCCAGCTTCGACGCCTCG--- >> 2969150
3307380 << T**-*T**AC*A******GT***TG-*G-***GG*GTG***CGT*AA***G**T******************CAC << 3307309
2969149 >> CTGGAACAGTTCCTGACCTGCTTCGCCAGCGGCGCCGCGCTGGTGGTGGTGCCC-CCGGAGATCATCGGCGG-CG >> 2969221
3307308 << *******A*G*C***C***A*C-**C*-*-******T*GT****GT*G*GG**CC****GGACA*-******C** << 3307238
2969223 >> --AAG-GGCTCACCCGGCTGCTCGCCCAGGCGCGCGTCACCCACCTGACCCTCACCCCCGCCATGCTGGCCACGG >> 2969293
3307237 << CC**GA***GC***A*-****C****C*T-**-*-**C**C***CG*AA*T****C*****CCG******C**** << 3307167
2969294 >> TCGATCC-CGAACCGCTG-ACGGAACTGCGCGCGGTCGTGGTCGGGGGCGACGTCTGCCCGC-CGAACGTCGTGG >> 2969365
3307166 << *-*GG*CT***CCC*A**G***-*A***CG******CT*G*****G*****C*GC***A**CT***C*-*C**G* << 3307095
2969366 >> A-ACGCTGGACCGGGCCGTGGGCGT-TGTTGAACGAATACGGGCCCACCGAGGCGACCGTGACCGCCGCGTGCGC >> 2969438
3307094 << *G**-********A**-*GGTG**GT**GTG***TAC*****G**CA*C*****G*****GC*****T*GCG*A* << 3307022
2969439 >> GC-GCC--TGCGGCCCGGCCACGACCGCACCG-TGGG-CGGACCGATCCGCGGGGTCGCGGC-GATGGTGCTCGA >> 2969507
3307021 << GTT***CT**CA*C****A**-*G*C*AG***G****A*A*-***C*C*****GT*-***T*A*A*G*****C** << 3306950
2969508 >> CCGGACCCTGCAACCGGTGCCGCCGGGCACGCCGGGGGAGCTGTATCTGGCCGGGCCGGGCCTGGCGCGCGGCTA >> 2969582
3306949 << ****GCC****CA***********************A********G***A****G**G********G***A**** << 3306875
2969583 >> CCGGCACCGGGTCGGCGAGACCGCGGCCCGATTCGTCGCCGACCCGTACGGTGCGCCGGGG-GAGCGGATGTACC >> 2969656
3306874 << **AGCC***GTT****GA*******GTT**G***GGC***T**********-***C**G**A************* << 3306801
2969657 >> GCACCGGTGATCTCGCGCGGTGG-CGCACCGACAGCGC-CGAGCCCGAGCTGGAACTGTTGGGCCGCAGCGACTT >> 2969729
3306800 << *******G*****-*-*A****TA**-**-*G*-***CC**-***A*G***AG--***--**-***CCG****CT << 3306737
2969730 >> CCAGGTCAAGATCCGCGGGTACCGGATCGAGCCGGGCGAGATCGACGCCGCTCTGACCGGGC-ACGAGCACGTCG >> 2969803
3306736 << ******C***********G*A***G*******A*G***********GTA*AC***-*C*TG*G**GG*CCC**C* << 3306663
2969804 >> AGCTGTCG-G-TGACGGTGCCGG-TGCCGAACAAGTCGGGCACGA-CCGTA-CTGGCCTCCTACGTGGT-GCCGG >> 2969872
3306662 << G-**-***G*G*G*****GCA*GT**A***-*C**-*TG*-****C***GCC******C*C******TGG****T << 3306593
2969873 >> TGCGCGGTCACCGC-CT-CGATGTCGCCGAACTCCAGCGGTTCGCCCGCGCGAC-G-CTGCCGCCGC-ACATGGT >> 2969942
3306592 << TG*-***-*CAC**C**C**GC*-******GC*C*A*-*GGT*-*CA*******G*C*****-*C**A******* << 3306524
2969943 >> GCCGACGGTGCTGATGCCGCTGGA-GAGCCTGCCGGTCAACGCCTTCGG-CAAGGTGGACCGCCGGGCGCTGCCG >> 2970015
3306523 << ***GC*G*G*C**C*GCA******G***C-*******C*-****G****C****G*G**A***TT*********G << 3306451
2970016 >> GAACCGGACTTCGGTGCCGTGCCGGTCGGGC-GTC-GACCGGAGACGCCGCGGGAACGGATCGTGGCGGAGCTGT >> 2970088
3306450 << *GC****AC****GC****G-*C**C*T***G***G*G**G*GTG**T**A**-*C***GCC*******G*C*** << 3306378
2970089 >> TCTCGGAGGTGCTCGGCGTGCCCGAGGTC-GGCGCCGACGACAGCTTCTTCG >> 2970139
3306377 << **CT*G*G*********G-*****CA*G*G********C************* << 3306327
Statistics
Matches: 845 (67.49%), Mismatches: 311 (24.84%), Indels: 96 (7.67%)
ATpairs: 23.55%, CGpairs: 76.45%, GTpairs: 0.00%
:i = 3306911
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 6276433
highcenter: 6276481
testcenter: 6276457
im3: 52.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3307935 center: 6281098 interval size: 300 g: 3
Alignment explanation
Indices: 2973130--2973447,3307651--3307968 Loop: 334203 Score: 96
Left Length: 318 Right Length: 318 Average length: 318.0
3 most common centers (desc): 6281098 6281099 6281097
2973120 >> (LF) CGAGCAACTG
3307978 << (RF) CGGGCGCCAG
2973130 >> CCGGCGCGCACCCTG-CGCGACATCCTGACCGCCACCGCCGCAGCGCAT-CCCGATGCCACCGCCGTGCGCGCGG >> 2973202
3307968 << ***G**TA***C***C****C-**C**G****TC*******T*-***C*C*****G***CA***C******-*TG << 3307897
2973203 >> GGACCACCTCG-CTC-ACCTATCGGGCGTTGGCCGAGCGGGCGG-CCGACCTCGCACGCAGGCTCATCGCCCGGG >> 2973274
3307896 << G-**CCC****T*T*G*****G****T*G*G*T******G**GTT***-***C**C**CCA***********TG* << 3307824
2973275 >> GCGCTCGCCCCG-A-ATCGTTCGTCGCCGTGG---TGGCGC-CGCGATCGGCG-GAACTACCCGTGGCGATCTGG >> 2973342
3307823 << *A**-***C***C*C*G***C-**C**C****GGT**G***C**CGG***T**G**A*-***-*---******** << 3307756
2973343 >> GCGGTGGCGATGACCGGCGCCGCCTTCGTGCCCATCGACCC-GGCGAATCCGCCCGAGCGGATCGCCGGTC-TGC >> 2973415
3307755 << *****G**G*T******A*****C*T*******C*******G***A*G-***CCC***********-*GT*T*** << 3307683
2973416 >> TGGCGGACGCGCACTGCGCC-CTCGGCGTGACC >> 2973447
3307682 << *G**G**AA*GCC*-****AC******G***** << 3307651
Statistics
Matches: 231 (69.37%), Mismatches: 72 (21.62%), Indels: 30 (9.01%)
ATpairs: 22.08%, CGpairs: 77.92%, GTpairs: 0.00%
:i = 3307935
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 6281074
highcenter: 6281122
testcenter: 6281098
im3: 57.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3308355 center: 6290569 interval size: 300 g: 3
Alignment explanation
Indices: 2979849--2982285,3308284--3310764 Loop: 325998 Score: 537
Left Length: 2437 Right Length: 2481 Average length: 2459.0
3 most common centers (desc): 6290569 6290572 6290587
2979839 >> (LF) TGCCGGGCGG
3310774 << (RF) ACTGCGGCGG
2979849 >> CCGGATCGGCGACGCCGAACGGCTGCGC-CCGCTGCGGCCGGCGAACACC-G-CGTACGTCGTCTTCACCTCCGG >> 2979920
3310764 << ****-**TG*********G**T*-****A********G**--***G****A*C*******CG*C*********** << 3310694
2979921 >> CTCCACCGGCGTGCCGAAAGGTGTCGCGGTCACCCACGCGGGCATCGCCGATTTCCTG-GCCGG--GCAGCGCGG >> 2979992
3310693 << ******C***TCT**G**C**G****CAT***C******G*GC****A*T*GGCC***G**A**TA*****T**T << 3310619
2979993 >> ATACGGCG-TCGGCCCCGATT-CGCGGGTGCTGCACTTCGCCTCCC-CGTCCTTCGACGCCTCGCTGCTCG-AGA >> 2980063
3310618 << C***G-**G***T*C***C*CT*****-*******CTT-*T*C***C*GT*********A****C*-**C*C**A << 3310548
2980064 >> TCCTGTTGGCGGT-CGGG--GGCGCAGCGGCGCTGGTGATCGC-GCCCACCGAGCTGTACGGGGGTACGGA--AC >> 2980132
3310547 << **A*G*C*G**G*C*T**AG*****G-**-*-******G****G**C*-****GCC*G**G*G*T*G***GGA** << 3310477
2980134 >> -TGGGCGAGTTCCT-GCGGACGCAGCGGGTGACGCAC-GC-C-TT-CGTGACCCCG--GCGG-CACTGGCCTCCG >> 2980198
3310476 << G***G**C*C*CT*G**G**-*T*T**G**G**-***T**A*T**A****G*CA**TA**A*A*CC**AA*CA*T << 3310404
2980199 >> TCGAC-CCG--GC-CG-GGCT-CGACGACCTGCGGGTGGTGCTGTCCGGCGGCGACGAGGTGCCCGCGGAC-CTG >> 2980266
3310403 << G****C***TA*AC**G****C**C*TC*******GT****A*G*C*T*******T*G*G*******G*G*T*G* << 3310329
2980268 >> -GTGCG----CC--GCTGGAC-CGGCACCGACGACGCGGGCGTCCGGGAGTTCCGGGTGCTCTACGGCCCGACCG >> 2980333
3310328 << A*G***TTAA**TG**G*GG*A******TGGC**********C**G*GC*G*C*TGTTG***********G**** << 3310254
2980334 >> AGGCCACCATCGTCGCGACCG-C-GGTCGA-CC-GCGGGCAGCCGACCGCCCGGTCCTGCATCGGCACGCCGGTG >> 2980404
3310253 << *****C**C***T**AG***AT*A**G**AC**G**G**-*A***CT*T**CA*-**--*******A******** << 3310183
2980405 >> CCGGGGATGCGGACGCTG-GTGCTCGACGCCCGCCTGCAGCCGGTGCCGGTCGGGGTGGCGGGCGAGCTGTACCT >> 2980478
3310182 << AC*TTG*GGT*T**-**TG***********CC******CG*********GG***G****AG*****T**G***** << 3310109
2980479 >> GGCGGGCCCGGGGCTGGCACGCGGCTACCTGGATCG-CCCCGGCACCAGCGCGGGCCGGTTCGTGGCCTGCCCGT >> 2980552
3310108 << ***G***CA*GT******G*************CGT*T****T**AC-*G***G*TT************CT***G* << 3310035
2980553 >> ACGCCGGGCCCGGCGAGCGCATGTACCGCACCGGCGACCT-G-G--TCCGCTG---GA-ACCGGGC-GG-GG--- >> 2980616
3310034 << A*T**---*****A*G*********A********C**A**G*G*GC*AC**C*GGG**A****G**G**T**TGG << 3309963
2980616 >> --G-CG-C-TGGAGTTCATGGGACGCAACGACTTCCAGGTCAAGGTGCGCGGCTTCCGGGTCGAACTGGGTGAGA >> 2980684
3309962 << TG*C**A*G****T*T*G****G****G***A************T*G******GTC**GT*******G**G**** << 3309888
2980685 >> TCGACGCCGCGCTCACCGCGCGTCCCGACGTCCGGTACGC-CG-TGACCGTCCCGCGCCGCGACGGCGCCGGACC >> 2980757
3309887 << ****C**C*****CGAC**-**T*CT*-**CCA**GC**CC**C**AC***CC*G*******C*G**T****GCT << 3309815
2980758 >> CGTCATGCTGGTCTCGTACGTGGTGCCCGAGGCCGGGGCG-CTGCCGGCCGAAGCCGACCTGCGCGCTGCCCTGA >> 2980831
3309814 << **--*-******CCCG****GG***C***GTG****G**GT*G*A-**T*TGG******C***A***C*CT***G << 3309744
2980833 >> -CCACGGTGCTGCCGTCCTACATGGTGCCCGCCGCGGTGCTGATCCTCGACCGGATCCCGCTCTCAC-CCAACGG >> 2980904
3309743 << C**C*T*-******GCC***************C*A*G**T**CGC**C***CT*G*C***A*CT-**C******* << 3309671
2980905 >> CAAACTGGATCGCCGCGCGTTGCCGGCTCCGGTGTTGCAGCCCAA-GCGATTC-CGGGCGCCGTCCACGC-C-GA >> 2980975
3309670 << ***CT*G**G***TTC**TG****G**G***GT*G*G*G*CA*CGG****GGCC***G*A******C***T*G** << 3309596
2980977 >> --TCGAGGAGATCG-TGGCCGGGGTGTTCGCCGAGACGCTGGGGCT-GACCGGACCGGTCGGCGCCGACGACGAT >> 2981046
3309595 << CC****TG*GC-**T******G*T*G*********CA***G*GG**G***-*-*--*T****CTA***C****CG << 3309526
2981047 >> TTCTTCGCCCTCGGCGGCAACAGCCTGGTCGCGACCCGGGTCG-CGGCGCGCCTGGGTGCCGCGATCGACGCGAG >> 2981120
3309525 << *******T*************AGC**GT****GC****G*G**A****TC*T-*GTTGT***TAG***C****-* << 3309453
2981121 >> TGTGC-CGGTACAGCTGATCT-T-CGAGGCGCCGACCGTCGCGACTCTGGCCGCCCGGG-CGGAATC-GCACGCC >> 2981190
3309452 << G*GA*T*GT*G*-**-**G**C*A******G********CA*GC*C*******TC****A***GGC*G*AC*T** << 3309380
2981191 >> GA-CACCGGCCGGGTGGCGC-TGA-CCGCGCAGCCGC-GGCCCGAGCGGGTGCCGTTGTCGTACGCCCAGCAGCG >> 2981261
3309379 << **A*C***G**G*GG*-***G**CA**G***--****T******G***GT*G***G*G***GGC**C******** << 3309308
2981262 >> CATGTGGTTCCTCAACCGCTTCGAACCCG-AGTCGGCCGCCTACAGCATTCCCGTCGTGATCCGGTTGTCCGGCA >> 2981335
3309307 << CG*****T**********A*****-*CT*G*GC*G**********T***C**CG*C*G*G*C**GG**CT***AC << 3309234
2981336 >> GCCTCGATCGCGACGCCCTGCGCGCCGCGCTCGACGACGTGGTCGGCCGCCACGAGATCCTGCGCACCGTCTACC >> 2981410
3309233 << AC*****G*T**G***C********C*C****TA******GT***T***C*******C**********TG**A** << 3309159
2981411 >> C-GCTGGTGGCGGGCGAGCCGGTG-CAGGTCGTGCTGCCCGTGGCGGAGGCGGCCGCGGCGCC-CGAGGTCGTCC >> 2981482
3309158 << *G*TT**GG-***T**-***G**TA***G*CT*G*TG**C*GT**G**GTAA-****A*TG**A***AGGC**CC << 3309087
2981483 >> GGGTCGACCGGGACGCCGTGGCCGAGGCGGT-GCGGGCG--TTCCTCGCCACCGTGTTCGATGTGACCACCCAGC >> 2981554
3309086 << T**G*-*****--*****TA*A*TGG***G*G**G*G**TT***CG**C*AT**CG******G**GC**T****C << 3309015
2981555 >> CACCCTTCCGGGTC-CG-TCTGTTCGACCTCGGTGGGGACGAGTGG-GTGCT-G-GCCGCCGCCATGCACCACAT >> 2981624
3309014 << *C**CC*C*****CC**G*C**C******C-*TGG*G*-*-**GGTG*****G*A**A*CA**--********** << 3308945
2981625 >> CGGCGGTGACGGCGCCTCGCTGGCACCGCTGGCCCGCGACATGATGCTCGCCTACGA-GGCGCGGTTGCTCGGTC >> 2981698
3308944 << *A***********ACC**GT*G**C*******A*******G**C**CG****CA-**G***G***CG**TC**CT << 3308871
2981699 >> AGGCGCCGGCCTGGACGCCGCTGCCGGTGCAGTACGCCGACTACGCGATCTGGCAGCGCGCGGTGCTCGGCGCGG >> 2981773
3308870 << G*******GCT********************T**********A*T*GG*C************G*********TG* << 3308796
2981774 >> AGGAGGATCCCGCGTCGCTG-CT-G-CACGCGCAGATCGACTACTGGACCACCCACCTGGCCGATCTGCCCCCGC >> 2981845
3308795 << ***GG**-*****TGT**C*C**G*C**-*-****G*C*G*******GCA***CGC*******CC******CTG* << 3308724
2981846 >> GGCTGGAGCTGCCGACCGACCGCCCCCGCCCGCC-CGTGCAGTCCTATGCCGGGGCG-AGCG--TGCCGATCCGG >> 2981916
3308723 << T***G**G*****GGAC***********C****AC**-**C*T**C--**-*T****G****CC***C*A**TGG << 3308653
2981917 >> ATCGGCGCCGAGTTGCACGCCGAC-C--TGGAACGTGTGGCCCGCGAACACAACACGACCCTGTTCATGGTGTTC >> 2981988
3308652 << ***GG******GTGG*CC****G*C*CG***--**-*****CCG**C**C*CC*CAG*C*************G*C << 3308581
2981989 >> CACGCGGCGCTCGCGGCCACGCTCG-GCAGGCTG-GCGGGCACCGACGACGTCGCCGTCGGCACCCCCTACGCCG >> 2982061
3308580 << ***********C**GT**GA***C*G**-**A**T***G*TC*T*-****T*******C********CTA***C* << 3308508
2982062 >> GACGCGGCGAACCCCAGCTCGACGATCTGGTCGGCATGTTCGTCAACACCCTGGTCCTGCGCACCCGGAT-GCGG >> 2982135
3308507 << *G***AGC**A**CCG***C*****C*****************************C*****C***CT***G*TGG << 3308433
2982136 >> CCG-GGCACGACTTTCGCCGAGCTGCTCG-CGCACGTCCGCGCGACCGATCTCGCCGCCTTCGGTCACGCCGACG >> 2982208
3308432 << ***G***-**C***-**TCG**C*A****T***C-**C****T******G***TT********GGT********* << 3308361
2982209 >> TGCCGTTCGAGCGCCTGGTGCAGGAACTCAACCCCGTCCGCTCGCACGCGCACCACCCGCTGTTCCAGGTGATGC >> 2982283
3308360 << *G***********CA*****C***AGC*********TC******TG***G*CC**A******************* << 3308286
2982284 >> TG >> 2982285
3308285 << ** << 3308284
Statistics
Matches: 1713 (67.12%), Mismatches: 653 (25.59%), Indels: 186 (7.29%)
ATpairs: 23.18%, CGpairs: 76.82%, GTpairs: 0.00%
:i = 3308355
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6290545
highcenter: 6290593
testcenter: 6290569
im3: 51.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3309187 center: 6281116 interval size: 300 g: 3
Alignment explanation
Indices: 2971922--2971977,3309139--3309194 Loop: 337161 Score: 57
Left Length: 56 Right Length: 56 Average length: 56.0
3 most common centers (desc): 6281116 0 0
2971912 >> (LF) GCCCAGGCAC
3309204 << (RF) GAGTAGCTGC
2971922 >> TCGTCGACCGGCACGACAGCCTGCGCACCGCGTTCGTGGAGAGCGCGGACGGGCCG >> 2971977
3309194 << **T*************C************T*G***GGG**TC**G*******G*** << 3309139
Statistics
Matches: 45 (80.36%), Mismatches: 11 (19.64%), Indels: 0 (0.00%)
ATpairs: 26.67%, CGpairs: 73.33%, GTpairs: 0.00%
:i = 3309187
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6281092
highcenter: 6281140
testcenter: 6281116
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3309942 center: 6293713 interval size: 300 g: 3
Alignment explanation
Indices: 2982970--2984207,3309500--3310773 Loop: 325292 Score: 563
Left Length: 1238 Right Length: 1274 Average length: 1256.0
3 most common centers (desc): 6293743 6293713 6293731
2982960 >> (LF) GGCGGGTCTG
3310783 << (RF) CAGGCCGATA
2982970 >> GACGCCACGCAGGTGACCGACGCCGAGCGGCTCGCCCCGCTACGGCCCGACCACCTGGCCTACATCCTGTTCACC >> 2983044
3310773 << ******C*G*G***G***********G**T*C***A*****C**G**************C***C*C********* << 3310699
2983045 >> TCCGGATCCACCGGCCGGCCGAAGGGCGTGGCGATCCCGCACCGCGCGGTGGTGAACCAGGTGCGCTGGCT-CAC >> 2983118
3310698 << *****G*****C***T*T**G********G*CA***TCG***CG****T*G**G****C*G********T*C**C << 3310624
2983119 >> CGACGCCTACGCGCTCGGCCCCGGCGATGTGGTGTTGCAGAAGACACCCGCCACCTTCGACGTGTCGGTGTGGGA >> 2983193
3310623 << *-***TC***G******T*C****A**G*G****G**********C*****************G*****G***** << 3310550
2983194 >> GCTGTTC-GGCAGTCTGGCGGTGGGCGCGCGGCTGGTGATCGCCCGC-CCCGGCGGCCACACCGACCCGGCCTAC >> 2983266
3310549 << *A*G***A***G*-***GT***G*****G**G******G*****-**C****T***C***GC***A********* << 3310477
2983267 >> CTCGCGGAGGTCATCGCCGCGCACGGCGTGACGATCACCTCGTT-CGTGCCGTCGATGCTCGCGGCGTTCG-CGC >> 2983339
3310476 << **C**G*C***C*******T*T*TG****G**G*-**C***T**A***************CA***A*****A*T* << 3310403
2983340 >> AGTCGGCACCG-GCATCGGC-GCTGC-GCTCGCTGCGGGCG--CTGCTGGTG-GCCG-G-TGAG-GC-GTT-CGG >> 2983403
3310402 << G*T**G*CTA*A**C-****A**C**T**GA**C**T**A*AA****T*GC*G*TT*G*G**GGG**G*GGT*G* << 3310329
2983404 >> CGCG-GACGTGGTGGCCGCAGT-G-CG-ACGGGT-GCTGCCCGAG-GTGGAACTGCACAACCTCTACGGACCGAC >> 2983472
3310328 << A***G**TA*GGTG*****GG*G*C*TG**G**TG**C*C*C*GGG*G**--*****************G**G** << 3310256
2983473 >> CGAGTTCACCGTGCACGCGACCGCGCGCCCGGTCCGTGCCGGCGACACCGG-CGCCGTCCCGATGGGTACGCCGG >> 2983546
3310255 << ****CG*C****GC***AG***ATGA*C***AC**G-*****--*A-****T*T****C**G**G**GA****** << 3310185
2983547 >> TGTGGAACGCCCGCGCCTACGTGCTCGACGCCCGGCTGCGGCCGGTCCCGCCCGGCGTGGTGGGGGAGCTGTATC >> 2983621
3310184 << ********T**T*TT****************CC*G*****G*****C**************G**G**T**G**G* << 3310110
2983622 >> TCGCCGGTGTCCAGGTGGCGCGCGGATACCACGCCCGGCCCGGATTGACCGCCGAACGGTTCGTGCCCGACCCCT >> 2983696
3310109 << *C*****G**C***G****G*****G****AC*C*T*T***GTCG********************C********* << 3310035
2983697 >> ACGGGCACGGTGAGCGGCTGTACCGAACCGGTGATCT-G-G--T-G-CGCCGC-A-ACCGCACCGGTG-ACC--- >> 2983761
3310034 << A*TGG*G*****G***GT****A**G*****C*****G*G*GC*A*C**C*G*C*A*****C****T*C***TGC << 3309960
2983761 >> ---T---GGAATATCTCGGCCGCACCGACTTCCAGGTGAAACTGCGCGGGTTGCGCATCGAACTCGGCGAAGTCG >> 2983828
3309959 << CGC*GGA******G**C***********A********G**CT*G*****GGT******************CT*** << 3309885
2983829 >> AGGC--CG-TGCTCGCCGAGCATCCCGGTGTCGCGCGCGCCCTG-GCGGCCGTGCGGTCCACCGGCGCGGCGGCC >> 2983899
3309884 << ****CC**G****C*****GC*C*C-****C****C***CAC**G*A****G-**G*-*CC***GTG*****T*C << 3309813
2983900 >> CGGCTGGTCGGCTACCTCGTGCCCGCCCCCGGCGCGACCCTCGATGTCGACGCCGTGCTGGCGC-ACGCCGCGGC >> 2983973
3309812 << T*-*****C******CG****C****T********G***C*C**GTG**G**T******G***CC**AC***G** << 3309739
2983974 >> GGAGCTGCCGGACTACATGGTGCCCG-G-TGCCGTGGTCGTGCTCGAC-AGCGTGCCGCTCACC-CCGTCGGGCA >> 2984044
3309738 << T*-******G*C**************G*C***--**T*C*G***C***C***-*****A*C*T*C**TT***-** << 3309669
2984045 >> AGCTGGACCGCAACCGC-CTGCCGGAACCCGACG-TCGCGCACGGCGCGTACCGG-GAAC-C-G---GCG-ACCT >> 2984110
3309668 << **T*G********C-**T*****G*G-****GT*G**G**CA**G****-*****G*CG*A*G*AGG***G***C << 3309597
2984111 >> GGCTGGAACGCGAGGTCGCGGAAGTCTTCGAGCACGTGCTCGGTGTCGAGCGGG-TCGGCGCCGACGACGACTTC >> 2984184
3309596 << T*C*G****T**G*T*C**G*GCT******GGC*C*******GGG****-**T*T****CTA***C****C**** << 3309523
2984185 >> TACGCCCTGGGCGGCAACTCGCT >> 2984207
3309522 << *A**T***G************** << 3309500
Statistics
Matches: 925 (71.26%), Mismatches: 289 (22.27%), Indels: 84 (6.47%)
ATpairs: 25.73%, CGpairs: 74.27%, GTpairs: 0.00%
:i = 3309942
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6293689
highcenter: 6293737
testcenter: 6293713
im3: 74.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3309944 center: 6279658 interval size: 300 g: 3
Alignment explanation
Indices: 2967720--2970153,3309505--3311983 Loop: 339351 Score: 278
Left Length: 2434 Right Length: 2479 Average length: 2456.5
3 most common centers (desc): 6279694 6279658 6279703
2967710 >> (LF) ACCAGGACCT
3311993 << (RF) GGCTCCTCAG
2967720 >> GGCCTACCGGGATTCCACCCGCTTCGACAACGACCGCAAGTACTGGACCGAGCACCTGGCCGGTGCGCCGCCGGT >> 2967794
3311983 << ******A**G**G**CC******C***TGC*******C********GC***T**C**G*****G***C-**CTTG << 3311910
2967796 >> -GGTGAGCCTGGCCGGCCGGGTCGGCAA-GCCCACCCTCCATCCGACGCTGATCAGCGCCCCGT---TGCCCGAC >> 2967864
3311909 << G**********A**T-***A*C*G**CCG********G*C*G***CC**C*GC*GAC****T*CCGC***A**** << 3311836
2967865 >> GACA-CCGCG-CGCCT-GCTGGACGAGGTGATCGCGGCGCGCGGCACGAGCGTCACGCCCATCGC-GGTCGCGGC >> 2967935
3311835 << *GC*C**A**T****CG***G****GG*G*CG***G***AA******G*T**G*A**T*CG*-**A********* << 3311762
2967936 >> CTTCGCGGCGTATCTG-GCGCGGATGACCGGCAGCGACG-AGGTGCTGCTGAGCCTGCCGGTCTCGGGCAGGCAC >> 2968008
3311761 << C**C**G**G**GC**G**A***-********-*TAG**C*G***C****G********G***C*G*G*G*-*** << 3311690
2968009 >> T-CGGCGGTGCTGCGACGGTCCGGTGGCATGGTCGCCAACGTGGTGCCGTTGCGGGTGCGG-GTCGCCG-G-ACG >> 2968079
3311689 << GT*G*A**G******G**G**C*GC***C**G*CA*C************G*****G*-***G****T**T*C**T << 3311616
2968080 >> CG-CGGTCGGTGAGTTGATCGAG-GCCACCCAGGGCGAGCTGACCAGTGCGCTGCGCCGCCAGCGCTACCGCCAG >> 2968152
3311615 << *GT*G****GG**GG**C*-*G*G***C**C**GACT**T*G***C*G*****G****T************C**G << 3311542
2968153 >> GAGGACATCTTCGCCGATATGG-G-C-A-TCGCCCGTGACGAGGC-CGCGTCCTTCGGTCCGGCGGTGAACCTGA >> 2968222
3311541 << **G******--*****GC*G**G*C*A*G**-****T-**-*GG*C**C**A******T***TA***G***T*G* << 3311472
2968223 >> TGATGATCGAGAACGAGGT-CGTCTTCGGGGAGACGACCGGGCGG-CTGCATGTGCTCACCTCGGGGCCGACCGC >> 2968295
3311471 << **G**A****GGGC***G*C**-******G-**G*AGCAG****TT*****G*****CC**T*G**G***CA**T << 3311399
2968296 >> CGACCTGTTCGTCAACATCTACCCGGGTGCGGGCCGCGAGAGCACCCACATCGATTTCCAGGGCAACC-CGAACA >> 2968369
3311398 << C*******GC******C*****TTGT*G-****C*-**----*******G*C**G***C*T*G*****C*GAC*- << 3311331
2968370 >> TCTACACCC-GCGCCGAACTGGCCGGGCATCACCGGCGGTTCCTGCG-CTTCCT-GCACGCCTTCCTCGCCCGCG >> 2968441
3311330 << *****C**CT***C-**CC*G****G****************C*-**T**T***G**-**TT***C*****CG** << 3311259
2968443 >> -GCGCCGACTGCCCGGTGGCGGCGCTGCCGCTGCTGGAACCGGCGGAGCGGGCGGCGCTGCTGCCCGTGCGCGGA >> 2968515
3311258 << T**-***C*TG******GGC********T*CGGT*GTGG*****G**T*TG*T*GA*C**C***T*G-**A-*** << 3311187
2968516 >> CCGA-ACC-CCGC-GCCGCCGCGGCTGCTACCC-GACAT-CCTGGGCGCGGC-CGCGC-GCCGCGACCCCGC-CG >> 2968582
3311186 << T***G***C****G*TC*A***GG*G**G****A*C*GCT****AA***G**T**C**G***TA*AC****CT** << 3311112
2968583 >> CCACCGCGATCATCGCCCCCGACGCGACGGTGACCTACGGCGAGCTCGACC-GCGAGTCCGCCCGGCTGGCCCGG >> 2968656
3311111 << **CA****G**CTCAA*CT****T*GC**A*******AG****T******CT***GT-**TT************G << 3311038
2968657 >> CGGCTCGTCGCACTCGGGTGCGGGCCG-GAGACGGCCGTGGGGATCGTGC-TGCGCCGGTCGGTGGAATCGGTC- >> 2968730
3311037 << *A****T****G*C***G-*******GG*****G*A***G***G*-****G****C**--****--*-***TG*A << 3310970
2968729 >> C-TCG-CGGCGTGGGCG-G-TCGCGCGATGCGGG-GCGGCGATCGTGCAGATCGACCCGGCGTATCCGGCCGCGC >> 2968798
3310969 << *C***A****T**AT**G*T**TAG**G-*****G*****GAT*G***G*G*C*******TGG******A**T** << 3310896
2968799 >> GCATCGAGCACATGATCGCCGACAGCGGCGCGCGGACCGTGCTCACGGTGGCCGAGCACCGGGATCGG-G-TGCC >> 2968871
3310895 << **GC**GGC****AG****AG*CCG**T*G**CA*AC*G*****CAG*G*****C*C*C-***G-***G*G**** << 3310823
2968872 >> CGACGGCGTGGCCGCGCTGGTGCTGGACGACCCGGCCACCCGCGCGGCGCTCGCGGGCACCGCCGACGGGCCCGT >> 2968946
3310822 << **G**T****G***A***G*G***G***-**CCA***-**A*AG****AT*-*-----**-****G*---**C** << 3310760
2968947 >> CGGCGACGACGAGCGGACCCGC-CCGCTGCGTCCGGCCGACACGGCGTATCTGACCTACACCTCCGGCTCCACCG >> 2969020
3310759 << *TG*****G***G**-**C***A********G**G*T*G**GA******GC**GAC*A***************C* << 3310686
2969021 >> GGACGCCGAAGGGTGTGCAGG-TGACCCATGCCGGGCTGG-C--CGGGCTGATCGCCGACCGCGTCGCCGCCTAC >> 2969091
3310685 << *G*CT**G*****G**-*C*AT*G*C***G****G*T*G*A*TT*G*****--***A*CTA**TC*T*-*TC*** << 3310615
2969092 >> G-GCATGGCCGCGGATT-CGCGGGTG-TCCT-ATG-CGCTCTCGCCCAGCTTCGACGCCTCG--CTGGAACAGTT >> 2969159
3310614 << GG**-*G*T***G*C*CT*****-**G*C*TC*T*T***-*-****-*G********A****CA****C*--*** << 3310547
2969160 >> C--CTGACCTGCTTCGCCAG-CGGCGCCGCGC-TGGTGGTGGT-GCCCCCGGAGATCATCG-G--C-GGCGAAGG >> 2969225
3310546 << *AA***C**-***--**TC*A*******-***G*****G*G*GG**C****TG*CC**G**G*TA*G***GA*G- << 3310477
2969226 >> GCTCACCCGGCTGCTCGCCCAGGCGCGCGTCACC-CACCTGACCCTCACCCCCGCCATGCTGGCCACGGTCGATC >> 2969299
3310477 << -**CC**C**C**T*****C**TTT*********T**C**G*AA-**CAC**CA*C******A*CCA*A***-** << 3310405
2969301 >> -CCGAA-CCGCTGA-CGGAACTGCG-C-GC--G-GTC-G-TGGTCGG--G-GGCGACGT-CTGCCCGCCGA-AC- >> 2969360
3310404 << T****GC***T**AC**GCC*****C*T**GA*G*C*T*C**A**A*GT*G*****T*GC**********GG**G << 3310330
2969359 >> GT-CGTGGA----ACGC-----T-GG-AC-CGGG-C-CGTG-GGC--GTTGTTGAACGAA-T--ACGGGCCCACC >> 2969412
3310329 << **C**G*T*AAGG****GCGGG*G**G**T*G**T*C**C*G***GG*GC*G**G**T*GG*GA****G****** << 3310255
2969413 >> GAGGCGACCGT-GACCGCCGCGTGCGCGCGCCTGCGGCCCGGCCACGA-CCG--CACCGTGGGCGGACCGATCCG >> 2969483
3310254 << *****GC****G***-*A*T*G*T*A-*-***-*A*-****-**C-**A***CT*******GG*TA-*C*G**CG << 3310188
2969484 >> CGGGGTCG--CGGC-GA---TG-GTGCTCGAC-CGGACCCTGCAACCGGTGCCGCCGGGCACGCCGGGGGAGCTG >> 2969550
3310187 << ***A**C*TT*TG*T**TGG*TG*********C***C**-***CG***********G***CA*CAG**G**T**G << 3310114
2969551 >> TATCTGGCCGGGCCGGGC--CTGGCGCGCGGCTACCGGCACCGGGTCG-GCGAGACCGCGGCCCGATTCGTCGCC >> 2969622
3310113 << **G********-*-*A**TC*****G**********A*CC*T*TGG*GT**A-******G*TT**C*****C*** << 3310042
2969623 >> GACCCGTACGGTGCGCCGGGGGAGCGGATGTACCGCACCGGTGATCTCGCGCGGTGGCGCACCGACA--GCGCCG >> 2969695
3310041 << *****G*A*TGG-*-****A*G-***G*****A********C***********A*****CG****A*GG****** << 3309970
2969697 >> -AG--CC-CGA-G-C-TGGAACTGTTGGGCCGCAGCGACTTCCAGGTCAAGATCCGCGGGTACCGGATCGAGCCG >> 2969763
3309969 << C**CT**T**CG*A*G*****ATGG*********G***A********************GG*C**G*****T*AG << 3309895
2969764 >> GGCGAGATCGACGCCGCTCTGACCGGGC-ACGAGCACGTCGAGCTGTCGGTGACGGTG-CCGGTGCCGAACAAGT >> 2969836
3309894 << ***********C**C**C***-*A**G*C******CC**C*G**C*C*****ACG***C**G*GGC**CG*CGTG << 3309821
2969837 >> CGGGCACGACCGTACTGGCCTCCTACGTGGTGCCGGTGCGCGGTCACCGCC-TCGATGTCGCCGAACTCCA-GCG >> 2969909
3309820 << ***GC****C*-*CC***C**T*CG*****--***GTG*-***-*C**T**C*C**GTG******GC*C*AG*** << 3309751
2969910 >> GTTC-GCCCGCGCGACGCTGCCGCCGC-ACATGGTGCCGACGGTGCTGATGCCGCTGGA-GAGCCTGCCGGTCAA >> 2969981
3309750 << *CT*A**C*-***-*C******-*C**A**********GC***********C*******G****-*****A*C** << 3309680
2969982 >> CGCCTTCGGCAAGGTGGACCGCCGGGCGCTGCCGGAACCGGA-CTTC-GGT-GCCGTG-CCGGTCGGGCGTCGAC >> 2970052
3309679 << ****TT*******T*G******TT***T*****G*GG***G*C**G*G***G****G*T****-***G*AG**A* << 3309606
2970053 >> CGGAGACGCCGCGG--GAACGGATCG-TGGCGGAGCTGTTCTCGGAGGTGCTCGGCGTGCCCGAGGTCGGCGCCG >> 2970124
3309605 << **G-*-*T***T**AG****TGC-**T****G*G*T*G***C*G**********G*G*GCT****T****CTA** << 3309534
2970125 >> ACGACAGCTTCTTCGCACTGGGTGGCGAC >> 2970153
3309533 << *C***C*********TG**G**G***T** << 3309505
Statistics
Matches: 1701 (65.96%), Mismatches: 633 (24.54%), Indels: 245 (9.50%)
ATpairs: 23.10%, CGpairs: 76.90%, GTpairs: 0.00%
:i = 3309944
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6279634
highcenter: 6279682
testcenter: 6279658
im3: 40.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3310117 center: 6284236 interval size: 300 g: 3
Alignment explanation
Indices: 2974072--2974840,3309386--3310164 Loop: 334545 Score: 191
Left Length: 769 Right Length: 779 Average length: 774.0
3 most common centers (desc): 6284230 6284227 6284236
2974062 >> (LF) GTCGGTGCGG
3310174 << (RF) GTCTTGGATG
2974072 >> GTACTCGACGCCTGGCTGCGGCCCGTGCCGGTGGGCGTCACCGGTGAACTCTACGTCGGCGGGCCGGGC--CTGG >> 2974144
3310164 << **C********CC*G*****G**C******GGG*****CCA***G*********G*-***G***-*A**TC**** << 3310092
2974145 >> CCCGCGGCTACCACGAGCGG-CCGGGCCTGACCGC-GACACGTTTCGTCGCCGACCCGGACCGGCCCGGCGAACG >> 2974217
3310091 << ************AC*-**T*T**GGTC********G**-***C*****C********GAA*TGG*****A*GC** << 3310019
2974218 >> GATCTACCGCACCGGCGA-C--GCG-GTCCGCTGG--G-TACGCG-GCCGCGACGGCCT-GGAA-C-TGGCCTAC >> 2974281
3310018 << G**C**A********C**A*AG***G**AC**C*GGG*T***-**G****-**C*T**TG**GCA*G***TT*** << 3309946
2974282 >> CTGGGCCGCAACGACCAGCAGGTCAAGATCCACGGTCTGCGGATCGAGCCGGGCGAGATCGACGCCCACCTGGCC >> 2974356
3309945 << **********G***AAAG*************C***G*T***G*****T*AG***********C**CCGC***-*A << 3309872
2974357 >> CGCCGACCCGCCG-TCGCGCGGGTCGCCACCGTGGATCAGCGCGGTCCCGCCGGGGAACCGGTGCTGGTGTCCTA >> 2974430
3309871 << C******CT**C*C*C*******GC*ACAC*****GG*CG*****G*C*T****G**-*-*T-*******CC*** << 3309800
2974431 >> CGTCGTCCCGGCGGCCGGCGCCGAAC-TGGACGT-GACGGCGCTGCGCGCGGATCTGGAACGTGCGCTCGCGCA- >> 2974504
3309799 << **G***CC*G**TG********-*G*C*****TGG*G**T**-***A*****CT***GCG**GTC***-**G*CC << 3309728
2974503 >> CTACATGATCCCCGCCGCGATCGTGGTACTCGACGACCTGCCGCTCA-CTCCGGTCGGCAAGGTCGATCGGAAAG >> 2974576
3309727 << *******C*C*****C*A*G*CT***GC**C*****C******A*C*T*C**TT-*******T****G**G**C* << 3309654
2974577 >> CGTTGCGCGCCAGGCCGGTCCGAGCCCGGCAGGAGTCG-GGCCGGCCGCCCGC-CACGCCGGCCGAACAGACCGT >> 2974649
3309653 << *TG***G****GG**T*G***GC*A*-*G*CG**GGC*G****A-***A****C***GCT**A******GC*CT* << 3309581
2974650 >> GGCGCG-GCTGTTCGCCGAGGTGCTCCAGCTCGACACCGTCACGGCCGACAGCAACTTCTTCACCCTCGGCGGCG >> 2974723
3309580 << ***-**G*T*G***************CGG******CTCT**CC*TA***CCT*CC*******CT**********T << 3309507
2974724 >> ACA-GCATCGT-GTCGCT-GCGAC-T-GGT-GGCGCTGGCCCGGTCGGCCGGGCTGCGATTCAC-ACCACGCGAC >> 2974791
3309506 << **AG**-**T*G*G***GG***G*C*G**GT**TA*TTGT***T**A-*C*G**C***G*-***G*A*-****** << 3309436
2974792 >> GTGTTCGAGGGAAAGACCGTCGCGGCGCTGGCCGCGCTGGCCCGC-GCCG >> 2974840
3309435 << G*********GGGG******CA*G**********T**C**A*C**G**** << 3309386
Statistics
Matches: 539 (67.38%), Mismatches: 209 (26.12%), Indels: 52 (6.50%)
ATpairs: 23.38%, CGpairs: 76.62%, GTpairs: 0.00%
:i = 3310117
tupleindex: 3
intervalindex: 1
matches_in_interval: 119.0000
lowcenter: 6284212
highcenter: 6284260
testcenter: 6284236
im3: 47.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3322120 center: 6361739 interval size: 300 g: 3
Alignment explanation
Indices: 3039617--3039657,3322082--3322122 Loop: 282424 Score: 45
Left Length: 41 Right Length: 41 Average length: 41.0
3 most common centers (desc): 6361739 6361738 0
3039607 >> (LF) GAGGGTGGCC
3322132 << (RF) GAACTGGACC
3039617 >> AGCACCGCGCCGATCCCGCGGTCGACGA-GTCCGGCGGCGGC >> 3039657
3322122 << *********C**G**T**A********GG***-********* << 3322082
Statistics
Matches: 35 (83.33%), Mismatches: 5 (11.90%), Indels: 2 (4.76%)
ATpairs: 17.14%, CGpairs: 82.86%, GTpairs: 0.00%
:i = 3322120
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 6361715
highcenter: 6361763
testcenter: 6361739
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3366140 center: 6732219 interval size: 20 g: 1
Alignment explanation
Indices: 3366079--3366106,3366111--3366140 Loop: 4 Score: 41
Left Length: 28 Right Length: 30 Average length: 29.0
3 most common centers (desc): 6732217 6732219 6732218
3366069 >> (LF) TCACCGGCCA
3366150 << (RF) GGCCCCCGCA
3366079 >> CGCACACG-GCTC-GGGCCCGTGCGCGAAC >> 3366106
3366140 << *******GG****G**************** << 3366111
Statistics
Matches: 27 (90.00%), Mismatches: 1 (3.33%), Indels: 2 (6.67%)
ATpairs: 22.22%, CGpairs: 77.78%, GTpairs: 0.00%
:i = 3366140
tupleindex: 1
intervalindex: 1
matches_in_interval: 18.0000
lowcenter: 6732213
highcenter: 6732225
testcenter: 6732219
im3: 7.0000
frequent_center_ratio*rnkp: 4.0000
Found at i: 3389538 center: 6778609 interval size: 80 g: 2
Alignment explanation
Indices: 3389070--3389116,3389495--3389539 Loop: 378 Score: 43
Left Length: 47 Right Length: 45 Average length: 46.0
3 most common centers (desc): 6778609 6778612 6778611
3389060 >> (LF) CCCTCCGACT
3389549 << (RF) CGCCGCACCG
3389070 >> CGACCAGTTCCTCGTAGCTGGGTCCGTCGCCGCCGCGCTG-CCCGCGC >> 3389116
3389539 << ***********GC**-****G-**C*-**C**********T******* << 3389495
Statistics
Matches: 39 (81.25%), Mismatches: 5 (10.42%), Indels: 4 (8.33%)
ATpairs: 20.51%, CGpairs: 79.49%, GTpairs: 0.00%
:i = 3389538
tupleindex: 2
intervalindex: 1
matches_in_interval: 39.0000
lowcenter: 6778597
highcenter: 6778621
testcenter: 6778609
im3: 16.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 3399524 center: 6438947 interval size: 300 g: 3
Alignment explanation
Indices: 3039420--3039595,3399352--3399527 Loop: 359756 Score: 41
Left Length: 176 Right Length: 176 Average length: 176.0
3 most common centers (desc): 6438947 6438950 6438948
3039410 >> (LF) CCGGGCAGTG
3399537 << (RF) GCTCGGTCGA
3039420 >> CCGCGGCGGCGCT-GCCGTAGGCGACAGCGCGGCGCAGCCGGTCGGCCGGAGCCGCGCCCGCGAGGTCGGCCAGC >> 3039493
3399527 << **T*******-**G*C***CG******A**-*G***G***G*-*AG****A-*C*****C***G*G********* << 3399457
3039494 >> AGGTA--CCCGGCGA-GCGCGGCGT-CACCGGCGCCGACGGTGCT-GCGCGGC-CGGATCGCGGGCGCGGTGGCA >> 3039562
3399456 << G*G*GCC*****CAGG**A****G*C*C***GAA**TG*G*G**CT**T*G**C****G****G**T**AG***C << 3399382
3039563 >> TGCCAGGCGC-CCTCGGCGGTGGCCAGCACCGCG >> 3039595
3399381 << *-*--*-***A*******GG**********C*** << 3399352
Statistics
Matches: 125 (67.93%), Mismatches: 43 (23.37%), Indels: 16 (8.70%)
ATpairs: 11.20%, CGpairs: 88.80%, GTpairs: 0.00%
:i = 3399524
tupleindex: 3
intervalindex: 1
matches_in_interval: 126.0000
lowcenter: 6438923
highcenter: 6438971
testcenter: 6438947
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3402653 center: 6409672 interval size: 300 g: 3
Alignment explanation
Indices: 3006927--3007144,3402528--3402745 Loop: 395383 Score: 91
Left Length: 218 Right Length: 218 Average length: 218.0
3 most common centers (desc): 6409672 6409670 0
3006917 >> (LF) GGTCGCGTAC
3402755 << (RF) CGGGCGTGGA
3006927 >> TCGCCGCCCA-CC-GACAGACCCTGCAGCAGCCGCGCCAGCAGCAGGATCACCGGGGCGGCGATGCCGAT-C-GT >> 3006997
3402745 << ********C*C**G**A-*-*******G*******TC**G**G***G*C******G**GGT**T******C*A** << 3402673
3006998 >> CGCATAGCCGGGCGTCACCGCGATCAGCAGCGACCCGGCCGCCATCA-CGGTCACCGACAGGGTAAGCGCGGAGC >> 3007071
3402672 << **--***AA****TC*C*TG********CAC******TACG******C*T*-**C*****G*TGG**C*A*AA** << 3402601
3007072 >> GGCGGCCGAACCGGTCGGCGTAGCGGCCCAACGCCCAGCCGCCGAGCGGACGCATCAGGAAGCCGACGGCGAA >> 3007144
3402600 << *G*******C******TG**T**A*G**C***T**TC************G**CCGCGG*********T***** << 3402528
Statistics
Matches: 156 (69.96%), Mismatches: 57 (25.56%), Indels: 10 (4.48%)
ATpairs: 25.00%, CGpairs: 75.00%, GTpairs: 0.00%
:i = 3402653
tupleindex: 3
intervalindex: 1
matches_in_interval: 111.0000
lowcenter: 6409648
highcenter: 6409696
testcenter: 6409672
im3: 48.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3402716 center: 6455163 interval size: 300 g: 3
Alignment explanation
Indices: 3052379--3052748,3402418--3402783 Loop: 349669 Score: 158
Left Length: 370 Right Length: 366 Average length: 368.0
3 most common centers (desc): 6455163 6455166 6455162
3052369 >> (LF) GCTGCGGTCC
3402793 << (RF) GCTGGCGCAC
3052379 >> GGGCTGTGCTCGGCCACCAGCAGCACCGCGCC-GCCCCATTCGCCGCCCACCGCGAAACCCTGGATGAACCGCAG >> 3052452
3402783 << ****-*******T*CC******G*CA******G**T**-*********C*C*G***AC*****G*GG*C****** << 3402711
3052453 >> CGTCACCAGCAGCGTGGGCGCCAGGTAGCCCAC-CTGACCGAACGTCGGCAG-GCAGCCCATCAGGAAGGTCGCC >> 3052525
3402710 << *TG**********TGG******GT*T****C*AC***A*-*A*CA*C*****G***-**C*****GCA**T*-** << 3402639
3052526 >> GC-GCCGACGAGCAGCAGGCTCAGCTGCAGCAGCTTCTTGCGCCCGT--A-CTTGTCGCCGAAGTGGCCGAACAC >> 3052596
3402638 << *TA***G*AG********GCT**-*-*-*G***CC*C*******C*GGC*C*GC***T********G******** << 3402567
3052597 >> CACACCGCCCAGCGGGCGGGCCGCGAAACCGACGGCGTAGGTGACGAAGGCGGCCAGGATCGCGTCGAGATCACT >> 3052671
3402566 << **CC*****C*****G*****CG****C*****T***T*****GA*****T***C***C*-**G-**G*C-*CCC << 3402495
3052672 >> GGTGCCCTGGGCGAAGAACACCTTGTTGAACACCAGGGTGGCCGCGGTGCCGTAGAGGAAGAACTCGTACCACTC >> 3052746
3402494 << *G*GTC**G**C*******ACCGG*GC***C*A***G*G***C**************G*A***C*********** << 3402420
3052747 >> GA >> 3052748
3402419 << ** << 3402418
Statistics
Matches: 265 (70.29%), Mismatches: 94 (24.93%), Indels: 18 (4.77%)
ATpairs: 29.06%, CGpairs: 70.94%, GTpairs: 0.00%
:i = 3402716
tupleindex: 3
intervalindex: 1
matches_in_interval: 124.0000
lowcenter: 6455139
highcenter: 6455187
testcenter: 6455163
im3: 43.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3420973 center: 6515730 interval size: 300 g: 3
Alignment explanation
Indices: 3094714--3094940,3420794--3421013 Loop: 325853 Score: 141
Left Length: 227 Right Length: 220 Average length: 223.5
3 most common centers (desc): 6515730 6515733 6515727
3094704 >> (LF) GCCTTGACGG
3421023 << (RF) GACACGTCCT
3094714 >> CGTTCTCGATGTTGCTGGGGGCGATGTTCTTGCCCGCCTCGTTGATGATCAGTTCCTTCTTGCGGTCGATGATGC >> 3094788
3421013 << **********G*GGA*****AT********G-******C**--********AC*****CT*G*****G*GG*-** << 3420943
3094789 >> GC-AGGTAGCCGTCCTCGTCGAGGGTGCCGACATCGCCGGTGTGCAGCCAGCCCTCGGCGTCGATCGCCTCGGCG >> 3094862
3420942 << T*C**T********CCC*****T*AT******C********************C***T*GT*GC****CC***A* << 3420868
3094863 >> GTCTTGTCGGGCATGTTGCGGTAGCCGCGGGTGACGATGGGGCCGCGGATGAGCACCTCGCCGTCG-GCGTCCAG >> 3094936
3420867 << *-***G-***AA-**GG*T**********GT*G***A***G*********G*G**********-**A***-**C* << 3420798
3094937 >> GCGC >> 3094940
3420797 << **** << 3420794
Statistics
Matches: 170 (74.24%), Mismatches: 48 (20.96%), Indels: 11 (4.80%)
ATpairs: 30.00%, CGpairs: 70.00%, GTpairs: 0.00%
:i = 3420973
tupleindex: 3
intervalindex: 1
matches_in_interval: 103.0000
lowcenter: 6515706
highcenter: 6515754
testcenter: 6515730
im3: 36.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3434548 center: 6486932 interval size: 300 g: 3
Alignment explanation
Indices: 3052384--3052653,3434279--3434548 Loop: 381625 Score: 106
Left Length: 270 Right Length: 270 Average length: 270.0
3 most common centers (desc): 6486932 6486933 6486929
3052374 >> (LF) GGTCCGGGCT
3434558 << (RF) CGGTGCCGCG
3052384 >> GTGCTCGGCCAC-CAGCAGCACCGCGCCGCCCCATTCGCCGCCCACCGCGAAACCCTGGATGAACCGCAGCGTCA >> 3052457
3434548 << *******AT-**A**A***C*AC***********G***C****C*TC**T*CC**********A*****GC**** << 3434475
3052458 >> CCAGCAGCGTGGGCGCCAGGTAGCCCACCTGAC-CGAACGTCGGCAGGCAGCCC-ATCAGGAAGGTCGCCGCGCC >> 3052530
3434474 << *********G*******GTG-**A**CT*C*GCC**A*C**C*****-***C**C**CCG**********TC*** << 3434402
3052532 >> ---GACGAGCAGC-AGGCTCAGCTGCAGCAGCTTCTTGCGCCCGTACTTGTCGCCGAAGTGGCCGAACACCACAC >> 3052601
3434401 << GTA*****A****C****C-*-*--*****G*CC******C**GTG*GC***T**G*CT**T***GGC*CT*AC* << 3434331
3052602 >> CGCCCAGCGGGCGGGCCGCGAAACCGACGGCGTAGGTGACGAAGGCGGCCAG >> 3052653
3434330 << *******A**G***********C**G**TG**TC***GC****G******** << 3434279
Statistics
Matches: 193 (69.68%), Mismatches: 70 (25.27%), Indels: 14 (5.05%)
ATpairs: 26.42%, CGpairs: 73.58%, GTpairs: 0.00%
:i = 3434548
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 6486908
highcenter: 6486956
testcenter: 6486932
im3: 85.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3467321 center: 6474258 interval size: 300 g: 3
Alignment explanation
Indices: 3006866--3007150,3467108--3467392 Loop: 459957 Score: 78
Left Length: 285 Right Length: 285 Average length: 285.0
3 most common centers (desc): 6474258 6474257 6474259
3006856 >> (LF) GGAAACTGGA
3467402 << (RF) CGTCGCTCGG
3006866 >> GTAGAACCCGCGCCTGCC-CTTGGAGGCCACCTCCGAC-AGGTAGGTC-GCGCTGGTCGCGTACTCGCCGCCCAC >> 3006937
3467392 << *****G******C*C**CC**G**G*-***A****-**C*A*******A****-*GGC*A*T*A**G**T**CC* << 3467321
3006938 >> CGACAGACCCTGCAGCAGCCGCGCCAGCAGCAGGATCACCGGGGCG-GCGATGCCGATCGTCGCATAGCCGGGCG >> 3007011
3467320 << ******G*******G***A***TC**G******G*CCC*C******T**-*CG***CGC**C**C***CA****T << 3467247
3007012 >> TCACCGCGATCAGC-AGCGACCCGGCCGCC-ATCACGGTCACCGACAGGGTAAGCGCGGAGCGGCGGCCGAACCG >> 3007084
3467246 << C**CCG*****-**C*A***AC*G-*****G****C*TTC*AC*ACCGGT*G***T**GA***********G*** << 3467174
3007085 >> GTCGGCGTAGCGGCCCAACGCCCAGCCGCCGAGCGGACGCATCAGGAAGCCGACGGCGAACACCGC >> 3007150
3467173 << ****G*GG**CG***C***TCCTA******G*****G**CCG****A*****G**G****C***** << 3467108
Statistics
Matches: 195 (67.01%), Mismatches: 84 (28.87%), Indels: 12 (4.12%)
ATpairs: 24.62%, CGpairs: 75.38%, GTpairs: 0.00%
:i = 3467321
tupleindex: 3
intervalindex: 1
matches_in_interval: 124.0000
lowcenter: 6474234
highcenter: 6474282
testcenter: 6474258
im3: 41.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3498795 center: 6910184 interval size: 600 g: 3
Alignment explanation
Indices: 3411264--3411613,3498571--3498920 Loop: 86957 Score: 111
Left Length: 350 Right Length: 350 Average length: 350.0
3 most common centers (desc): 6910184 6910185 0
3411254 >> (LF) GCCGCCGCGC
3498930 << (RF) GACAGGTCAC
3411264 >> AGGATGTCGAGCACGTTCTCCACGCCGGCCTGCCCGTTGGCGGCCAGGCCCCACAGGTAGGCGCGGCCGATCATC >> 3411338
3498920 << **********G*C**GC**C***G*******GC**TGG***GTA**T***CA*C****************GC*CC << 3498846
3411339 >> ACCGC-GCGCGCACCCAACGCGACCGCCTTGACCACGTCGCTGCCGCGGCG-GATGCCGCCGTCGAGCAGCACCT >> 3411411
3498845 << CA-**T*********C*C******C***CG***C*A****CG****-*T*TA*******CA*********C*A** << 3498773
3411412 >> CGATCTCGTGCCCGACGGTGTCG-GCGATGACGGGCAGCGCCCGCACCGCGGCCGGG-GTGCCGTCGAGGTTGTT >> 3411484
3498772 << **C*C***GGC****-*G*GG**G**G*GGA********TCCA*C*T**-*GT****G*G**CT**G*TG*-**G << 3498701
3411485 >> G-CCGCCGTGGTTGGACACCGAGATCGCGGCGACGCCCGCGTCCACCGCGCG-GCGCGCGTCGTCCACCCGGATC >> 3411557
3498700 << *C**T*****T*****C*C*TG***CG**A****T**C*A***T**CT*-**G**********C*C*CC-*AG*C << 3498628
3411559 >> -ACGCCCTTGAGCATCACCGGGCCGTTCCACTGCTCGCAGATCCAGGCCACGTCGTC >> 3411613
3498627 << C*A********G**G****AA***GCC******C**G*C***********C***G** << 3498571
Statistics
Matches: 242 (67.79%), Mismatches: 101 (28.29%), Indels: 14 (3.92%)
ATpairs: 27.69%, CGpairs: 72.31%, GTpairs: 0.00%
:i = 3498795
tupleindex: 3
intervalindex: 2
matches_in_interval: 223.0000
lowcenter: 6910150
highcenter: 6910218
testcenter: 6910184
im3: 53.0000
frequent_center_ratio*rnkp: 41.4200
Found at i: 3507474 center: 6579240 interval size: 300 g: 3
Alignment explanation
Indices: 3070721--3071836,3507404--3508520 Loop: 435567 Score: 2222
Left Length: 1116 Right Length: 1117 Average length: 1116.5
3 most common centers (desc): 6579241 6579240 0
3070711 >> (LF) CACAACTAAG
3508530 << (RF) GAGGCGATCG
3070721 >> TGTATGAGGCCGTGACGTTGGTGACGCCGGTGTGGAGGCGGCTGGCTGGTGGCCGGTTTCCGGCGGCAGTGTGGG >> 3070795
3508520 << *************************************************************************** << 3508446
3070796 >> GTCGATGGTAGTTGTAGTGGATGTTCCAGATTCCGAGTGCGTCGGTGCGTTGGGTTTCGCTGGTCCATTCACGGG >> 3070870
3508445 << *************************************************************************** << 3508371
3070871 >> CGTAGAGGAATTCCTCGGCCAGGATGCGGTGGTAGCGCTCGACCTTGCCGTTGTGCCGTGGCGTGTAGGGGTTGA >> 3070945
3508370 << *************************************************************************** << 3508296
3070946 >> TGCGCTGGTGGCGAGCGCCGAGCAGCACCTTGGAGAAATCGGCCGCCCGGTAGCAGGCGCCGTTGTCGGTGACGA >> 3071020
3508295 << *************************************************************************** << 3508221
3071021 >> TCCGCTGTATGCGGCTGATGCCGTGAGCGGCGAAGAACGCTCTGGCCCGGAAAACGAACCCGATCGCGGTGAGGG >> 3071095
3508220 << *************************************************************************** << 3508146
3071096 >> CTTTCTCGTCCGGCAGAGCCTCGGTGTAAGCCAGCCGGGAGAACCCGTCGACCGCGGTGTGCAGGAACACATACC >> 3071170
3508145 << *************************************************************************** << 3508071
3071171 >> CGGTGCGGGTGCCACGCTTCTTTGCGCGGGCGACAGCCTTGTCCCGATCGGAGCCTTTGCCGTGCACACGCCAGC >> 3071245
3508070 << *************************************************************************** << 3507996
3071246 >> CGCCGCCGTCGGGGATGCGTCCGACCTTCTTGACGTCGATGTGCACCATGTGACCGGGACGGTGGGCGATGATGC >> 3071320
3507995 << *************************************************************************** << 3507921
3071321 >> GACGCGGTGCGCGGTTCGATGCGCCGGCGGGGTCGAGAAACCGCCGCCGGTTCAGTCCCAGCCGGTGCAGGTGGC >> 3071395
3507920 << *************************************************************************** << 3507846
3071396 >> GACTGACCGTGCGTACCGAGATCGTCATGCCCTCGGCCCGCAGCTCGGTAGCGATGCGTCGTGCCGACCATTTGC >> 3071470
3507845 << *************************************************************************** << 3507771
3071471 >> GCTCACGTCGCAGCTGTTCGATCCGCACGATCGTCTCGGCGGGTGTCGCTGCCGGTGACCGGTGCGGCACCGAGG >> 3071545
3507770 << *************************************************************************** << 3507696
3071546 >> ATCGGTCGATCAGGCCCAGCTCACCGAACCGGCGAAACCTGTTGACCCACTTGCTCGCACACTGGCGTGACAGCC >> 3071620
3507695 << *************************************************************************** << 3507621
3071621 >> CCATTTCGGCGGCGACATGAGCGATCGGCCGCACCTGGCAGCGTTGCACGAGCCGGTAGCGGCCCTCCACGGTCA >> 3071695
3507620 << *************************************************************************** << 3507546
3071696 >> AAGGGGCAT-TACGGTGAATCACGGCGGTTCTTTCGGCTTGCGGCGGACGTGGTAGTTGGCGCTTCACATCCTGC >> 3071769
3507545 << *********G***************************************************************** << 3507471
3071770 >> CGCCGAAAGAACCGCCCTCAGCTCACCACCGCCACCGCGTCACCAACGTCACGACCCGCAACAACTA >> 3071836
3507470 << ***************************************************************C*** << 3507404
Statistics
Matches: 1115 (99.82%), Mismatches: 1 (0.09%), Indels: 1 (0.09%)
ATpairs: 33.99%, CGpairs: 66.01%, GTpairs: 0.00%
:i = 3507474
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6579216
highcenter: 6579264
testcenter: 6579240
im3: 67.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3513729 center: 6853264 interval size: 300 g: 3
Alignment explanation
Indices: 3339079--3339796,3513471--3514188 Loop: 173674 Score: 231
Left Length: 718 Right Length: 718 Average length: 718.0
3 most common centers (desc): 6853267 6853264 6853266
3339069 >> (LF) CGGATCGAAT
3514198 << (RF) CTGGAGCGGC
3339079 >> TCGACGACGTCCACTTCTCCTA-C-G-ACGGCCGCACCGAGGTCCTGCGCGGGGTG-CGCGCGGTGTGTGAGCCG >> 3339149
3514188 << ****C**A**C******T****A*G*C*****-**G***-*-*C********T***A**AA*TGG*GAGGG***G << 3514117
3339150 >> GGCACGATCACCGCGCTGGTCGGCCCGTCCGGCGCGGGGAAATCGACCCTTGCCGCCCTGGTCCCCCGGTTCCAC >> 3339224
3514116 << *-*A**G*C**C**G**************C**TA*G**G**CT****CC*CT**TCCT**G*CT******T*CGC << 3514043
3339225 >> GACGT-GAC-CGGCGGTGCCGTGCGGATCGGCGGGGTGGACGTGCGCGACATCCCCACCGAACGCCTGCT-C-GC >> 3339295
3514042 << ***GGG***C***-*GT**T-*G********T**G**G**AG*******TG**CT*-***CA**TCTA**T*G** << 3513971
3339296 >> CTCGATGGCACTGGTGTTCCAGGACGTCGTGC-TCGTGCG-CGACACCGTCACCGAGAACATCCGGCTCGGGCGA >> 3339368
3513970 << TT*-**G**CC****G***********-**T*G**A*-**T*******T**GCC*G*******CG*T*-**G**G << 3513900
3339369 >> CCCGAG-GCCGGGCGGGACGAGGTCGAGGCCGCGGCGAAGGCGGCCG-CGATCCACGACGTCATCACCGCCCTCC >> 3339441
3513899 << ****C*G***TG**T***CG**T*************GGCG******TT**-*C***TG*A**C*C***GCC**C* << 3513826
3339442 >> CCGACGGCTACGACACGGTGCTCGGCGTGGACGT-GGA--ACTGTCCGGCGGCGAACGGCAACGGCTCACCATCG >> 3339513
3513825 << *CG*************GGC*C******T*TA**CG**GCG************A**C**G**C**AT*AA*C**** << 3513751
3339514 >> CCAGGGCGATCCTGTCCGACGCGCCGATCGTGGTGCTCGACGAAGCGACCGCCGCGCTCGACCCGGACAGCGAAA >> 3339588
3513750 << **G*G********GTTC**************GG****C*****CG*************C***T*G**C*****CC << 3513676
3339589 >> CCGCCGTGCAGCACGCGCTCTCGGCGCTGATCGCCGGGCGGACCGTCCTGGTCGTGGCCCACCG-C-CTGCACAC >> 3339661
3513675 << AC*********C*T**GT**CTG**T***C****C*T*TT*******C*G**CT*G**C*****C*A**G***-* << 3513602
3339662 >> GATCACCGAAGCCGACCAGATCCTCGTCCTCGACGACGGCCGCGTCGTCGAACGCGG-ACGCCACGCCGACCTGC >> 3339735
3513601 << *-*CCAC*GG**C***********C**C*****C*****CCAC**C*G***C*****G**-*****TC**C**** << 3513529
3339736 >> TCGCCGCGA-ACGGGCGCTACG-CGCGCATGTGGGCCGCCCAGCACCGCGCGTCCCAGGACTG >> 3339796
3513528 << *C**-***CG*C*********GT***-*********C**C***-***-****-***C*G**** << 3513471
Statistics
Matches: 505 (68.43%), Mismatches: 193 (26.15%), Indels: 40 (5.42%)
ATpairs: 27.33%, CGpairs: 72.67%, GTpairs: 0.00%
:i = 3513729
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6853240
highcenter: 6853288
testcenter: 6853264
im3: 68.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3513806 center: 6855008 interval size: 300 g: 3
Alignment explanation
Indices: 3339161--3341471,3513543--3515869 Loop: 172071 Score: 386
Left Length: 2311 Right Length: 2327 Average length: 2319.0
3 most common centers (desc): 6855002 6855024 6855030
3339151 >> (LF) GCACGATCAC
3515879 << (RF) CGTCACACAC
3339161 >> CGCGCTGGTCGGCCCGTCCGGCGCGGGGAAATCGACCCTTGCCGCCCTGGTCCCCCGGTTCCACGACGT-GA--C >> 3339232
3515869 << *************A********A****G********CC*G***GCC**GT****C******ACC*****G**AA* << 3515795
3339233 >> CGG-C-GGTGCCGTGCGGATCGGCGGGGTGGACGTGCGCGACATCCCCACCGAACG-CCTGCTCGCCTCGATGGC >> 3339304
3515794 << ***C*T***-**-*-**--****************G**CG*C***C*CA*-*G*C*T**********T*GG**** << 3515726
3339305 >> ACTGGTGTTCCAGGA-C-GT-CGTGCTCGTGCGCGACACCGTCACCGAGAACATCCGGCTCGGGCGACCCGAGGC >> 3339376
3515725 << CT*************C*G**A*G*****-*-*-*********CC****************C*GG**C**CAG*** << 3515654
3339377 >> CGGGCGG-GACGAGGTCGAGGCCGCGGCGAAGGCGGCC-GCGATCCACGACGTCATCA-C-CGCC-CTCCC-CGA >> 3339445
3515653 << *TG-**TG*G***************G***GC***G***G***G-*******A*****CA*A**CTT**C**C**- << 3515582
3339446 >> CGGCTACGACAC---GGT-GCTCGGCGTGGACGTGGAACTGTCCGGCGGCGAACGGCAACGGCTCACCATCGCCA >> 3339516
3515581 << ************GGT***G*C*CT***C**-**GGGCC**G********CG*C**G**C**GT**********TG << 3515508
3339517 >> GGGCGATCCTGTCCGACGCGCCGATCGTGGTGCTCGACGAAGCGACCGCCG-CGCTCGACCCGGACAGCGAAACC >> 3339590
3515507 << *A**GG*C**GC*C**************G**G********C******A**AA***-*********C*T****C*C << 3515434
3339591 >> GCCGTGCAGCACGCGCTCTCGGCGCTGATCGCCGGGCGGACCGTCCTGGTCGTGGCCCACCGCCTGCACACGATC >> 3339665
3515433 << **CT*G***C*****T**C*G*TT**G*G*GC***G**G*****C*****C*****C*****C***AG******* << 3515359
3339666 >> ACCGAAGCCGACCAGATCCTCGTCCTCGACGACGGCCGCGTCGTCGAACGCGG-ACGCCACGCCGACCTGCTCGC >> 3339739
3515358 << CA***G**C****CG***C*C**C**C**TAG******C****G****AG***G****-**T****T******** << 3515285
3339740 >> CGCGAACGGGCGCTACGCGCGCATGTGGGC-CGCC-C-AGCAC-CGCGCGTCCCAGGACT-GACCCCACC-CCGA >> 3339808
3515284 << ***GCC*********A**G**CG*G****TT*T**T*C***C*C*G****CTACC**A**G*C*TC*A*CT**T* << 3515210
3339809 >> GAAGGA-A--C-CCGATGATCACCAACCT-CTACCG--GCTCGCACCCCATCCCGGCCTGCTGGTGCG-GCTGGG >> 3339875
3515209 << *C***GG*AC*C*******CC*CT*AA**C*CC*A*TA***-**A*C**CG*CC**T**T*G*GCT**T*A*GG* << 3515136
3339876 >> C-G--CCCTCAAC-GC-CG-T-C-CAG-TCGATCCTGCAGGGCCTGCTGCTGGGC-A-GTGCGATCCCGATCCTG >> 3339939
3515135 << *G*AT****CACCA**C**G*C*A*C*C******C******GC**-*CG**TG**G*G**A-************* << 3515063
3339940 >> CGGGCGCTGCTCCAGCCCCAGCCTCGGT-TCGACGAGGCCGCGCCCTGGCT-GGCTGCCGCCGCTG-CCGGTCTC >> 3340011
3515062 << ATG*T****TC*TC***CC**C-***TGT**TG**GG**AAC*T*****A*G***-*A-**A*C**C**A*-**C << 3514992
3340012 >> G-TCGCCTACGCGGTGT-TGACGGTCCTGACCACACCGGT-CGCGTTCGCCGCCGCCGTC-GATCTGACCGC-GC >> 3340081
3514991 << *C*C*A*G*C****-**G**-*TG*T*C*C*TC*AC****A**T*****C-**C*AC*C*G**GC**GA***G** << 3514920
3340082 >> AGATCCGGCACCGGATCATCCGCCATGTCGCC-ACCGTGCCGATGGGCTGGTTCACCGCCGAACACAAGGCGCAG >> 3340155
3514919 << G-*G****AAC***G**CC*-*T**T*GA**CC***T*****GT**G*-*T--*-*A*CT*GC*-*CG*G***G* << 3514852
3340156 >> TTGACGCGGGCGACCACCGCCGACGCCAACAACATCGGCCACCTGGCCG-TCA-C-CATCGGCGCTCCCGCGG-T >> 3340226
3514851 << C****-*A--*-*******A*TAC*C**C****C***-***T*CG*T**T*C*C*A*C**G*C*T*CC**AA*G* << 3514782
3340227 >> GACC-TC--GCTGCTCAC-G-CC-GCTGACGATCGTGGCGATGACCTTCGCCGTCGACTGGCGGCTGGCCCTGCT >> 3340295
3514781 << *AA*T**GT*T**C*C**G*A**G*CG*CA*****CG*A*G*G*A*G*********************CA***C* << 3514707
3340296 >> GCTGGCCGCCGTGCTGCCGCCCGCGCTGCTGG-CGCTGCGCCGGGCCGGGCGGATCGCCG-CGCAGGC-CGACAT >> 3340367
3514706 << ***G**C***AG*******AA****C**A**AA**-*G**C**GTA*GT**T****T***C***C***C**-*CG << 3514634
3340368 >> CGAATTGGAGGAGGCGG-CGACCGAACTGGC-CG-GCCGGGCGGTCGAACTGGGGCAGGCGCAGCCGGTGCTGCG >> 3340439
3514633 << **C*GG*-*G*G***G*T**-***--*C*G*C**T******A******CATG*A*****CG*A************ << 3514563
3340440 >> GGCGGCGGGTCAGGCGGGCACCG-GCACCGCCCGGATGCGGGCGGCGCTGGACGAACACCGGGCGGTCTACCGGC >> 3340513
3514562 << G**GT*G**C***TAG****C**G*AG***C*-*GG**CAG*T*T**A****C**C**CTTG****-*C*A-*A* << 3514491
3340514 >> GGGGCCTGCGGCGTTCGATGGTCCCCGACCTGACCTTCA--CCGCCGTCGTGATGGCCG-GTTTC-GC-CGCGGT >> 3340583
3514490 << **G-*T***T*TTCGC*G**T-**AC*-**C*C***C*ACC******CC***C**GTTAA**C**A*CA****T* << 3514419
3340584 >> CCTGGTCGC-CGCCGCCGCGCTGGTCGC-CGAGGGGCAGTTGCCCGCGGCCGACCTGGTGG-CGCTGCTGGT-GC >> 3340654
3514418 << CC*G*-***A**C***C********-**A****GA**C*T**A*C*****-*-*-**G**TA***G*-****G** << 3514350
3340655 >> TCGCCACCC-GC--TTCCTCGAACCGCTGGGCAACCTCGTCGAACTCATCGGCGCCGTCCACGCGATGAACAACG >> 3340726
3514350 << -****C**CA**CT***CG***C**GT**A-*C**CTA*C*G****AC*****-*T-**AA**T***G*G*C**A << 3514279
3340727 >> CCGCGGTG---CGGGTGCGG-GCCCTGCTCGACACCCCGGCACTGCCCACCCGCGACCACCCGGCCCCGGTGCCC >> 3340797
3514278 << *C***G**CTT**G**-***A***C********C*******CA****CCACC*A****-*C***C*C**GTA*T* << 3514206
3340798 >> GCCGACTGCGGGGTCGAGTTCGACGAGGTGACCTTCACCTATCCCGGCGCCCGCACGCCGGCCCTGCGCGGGGTG >> 3340872
3514206 << -*C*G*T-**TGG***GGC****C**A***GT************C*T**C*-**-*-****AC********T*** << 3514136
3340873 >> TCCGTGCACTGC-CCGGCCGGCAGCACC-ACCGCCCTCGTCGGCCCGTCCGGCTCCGGGAAGACGACGATCACCC >> 3340945
3514135 << **-**A***G**A**G***G**A-*C*AC**C*****C***********C**T*****G*********C*C***T << 3514063
3340946 >> GGCTCGTCGCCCGGTTCTTCGATCCCGACCGGGGC-GCGGTCCGCCTCGGCGGCGTCGACCTGCGGGAGCTGGAC >> 3341019
3514062 << **T*CG*CT******T*CGC**G******CG****T**T-****CT****T********A*****G**T**G*** << 3513989
3341020 >> CCGCACGCGCTGCT-CGACCGGATCGCGATCGTGTTCCAGGACGTCTACCTGTTCGACGACACCATCGAGGAGAA >> 3341093
3513988 << ***CA**T*T*-**T*GC*TTG******C*C**G***********C*****G***************GC**G*** << 3513915
3341094 >> CCTGCGC-ATCGCCCGGCCCGACGCGACCCGCACCGACCTGGCCGCGGCCGC--CACG-GCGGCC--CG-GCTCG >> 3341161
3513914 << *T*-***C**C***-*G****C-***G*T****C-**C*T*TA**T******CC*G**G******TT**A**T*T << 3513844
3341162 >> ACGAGGTGATCGAGCGGCTTCCGGACGGGTGGGCCACCCGGGTCGGCGAAGGCGG-GTCGCGGTTGTCCGGCGGC >> 3341235
3513843 << G*AAG****G*---*****C***G****G*TG*T***************CTA***G*C***TG*-*********A << 3513773
3341236 >> GAGCGCCAGCGGGTGGCGATCGCCCGGGCGTTCCTGAAGCGCGCGCCGATCGTCCTCATCGACGAGGCCG-CCTC >> 3341309
3513772 << ***********AT*AA**********G***T****G***CT***************CG*C******-***T**C* << 3513699
3341310 >> CGCGCTGGACCCGGAGAACGAGCACGCGGTCGCCGCC-GCGATCGCCGAACTCGCCGCCGATCCGGCCCGCACCG >> 3341383
3513698 << **********T*G****C****CAC**G**-**T*CTT**G****T**G***C*A***C**---*TT--*-**** << 3513631
3341384 >> TCCTGGTGATCGCCCATCGGCCGGCCACGATCGCCGCTGCCGACCGGGTCGTCGCCCT-GATGGACGGACGCGTG >> 3341457
3513630 << **C*G********C**G****AGA****GC*C*AC**G**C****T*T**G*C*AC**G**-******CCAC*** << 3513557
3341458 >> GTCGAAGCG-GGCAC >> 3341471
3513556 << *G***-***G***** << 3513543
Statistics
Matches: 1603 (66.38%), Mismatches: 620 (25.67%), Indels: 192 (7.95%)
ATpairs: 24.20%, CGpairs: 75.80%, GTpairs: 0.00%
:i = 3513806
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6854984
highcenter: 6855032
testcenter: 6855008
im3: 66.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3555370 center: 7110631 interval size: 40 g: 1
Alignment explanation
Indices: 3555284--3555312,3555318--3555347 Loop: 5 Score: 43
Left Length: 29 Right Length: 30 Average length: 29.5
3 most common centers (desc): 7110630 7110631 0
3555274 >> (LF) GCCGTCGCAC
3555357 << (RF) CGACAGGCCT
3555284 >> CGGAACCGG-GCGCTCACCCACGGATGTCA >> 3555312
3555347 << ***A*****A**************A***** << 3555318
Statistics
Matches: 27 (90.00%), Mismatches: 2 (6.67%), Indels: 1 (3.33%)
ATpairs: 25.93%, CGpairs: 74.07%, GTpairs: 0.00%
:i = 3555370
tupleindex: 1
intervalindex: 2
matches_in_interval: 45.0000
lowcenter: 7110623
highcenter: 7110639
testcenter: 7110631
im3: 10.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3573320 center: 6834909 interval size: 300 g: 3
Alignment explanation
Indices: 3261586--3261707,3573202--3573323 Loop: 311494 Score: 57
Left Length: 122 Right Length: 122 Average length: 122.0
3 most common centers (desc): 6834909 6834908 6834907
3261576 >> (LF) AGCGTCGTCC
3573333 << (RF) CCTTGCCGGC
3261586 >> TCGTCACCGG--CGGCGGGCGCGGAATCGGCCGCGGCATCGCCCTGCGCCT-GGCCCGCGACGGCCACGACC-TC >> 3261656
3573323 << **********AC******-*-***G************G*C***CT*ATA**G***A***A-***C-*A****C** << 3573253
3261657 >> G-CGCTCGTCGACCTCGACC-CGTCCACGCTCGCCGCGGTCGCCGACGAAATC >> 3261707
3573252 << *A**-***G****T****ACT*TG**C***-*********C*A**G***C*** << 3573202
Statistics
Matches: 93 (72.66%), Mismatches: 23 (17.97%), Indels: 12 (9.38%)
ATpairs: 19.35%, CGpairs: 80.65%, GTpairs: 0.00%
:i = 3573320
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6834885
highcenter: 6834933
testcenter: 6834909
im3: 40.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3575758 center: 7133735 interval size: 300 g: 3
Alignment explanation
Indices: 3557048--3558114,3575621--3576702 Loop: 17506 Score: 698
Left Length: 1067 Right Length: 1082 Average length: 1074.5
3 most common centers (desc): 7133750 7133735 7133747
3557038 >> (LF) GACACCGAAA
3576712 << (RF) CCTCTAGTCC
3557048 >> TCCGCACCATCGAAGCGGCCGCGGCC-CCCACGCGCTTCGCGCGCGGCTGGCACTGCCTCGGCCTGGCCCGCGAC >> 3557121
3576702 << *****CA******GA*G*C*-*A***T***CT***C*T***G*****A***********C*******AA****** << 3576629
3557122 >> TTCTCCGACGGAAAGCCGCACGCCATCGAGGCATTCGGCACGAAACTGGTGGTCTTCCGCGGCG-AGAACGGCAC >> 3557195
3576628 << ***C*******AGC*******GTCC*CAGG**C********GC**************-****C*C**C****T*T << 3576555
3557196 >> ACTCAACGTGCTCGACGCCTACTGCAGGCACATGGGCGGCGACCTCAGC-CAGGGCACCGTCAAGGGTGACGCCG >> 3557269
3576554 << *C***********T******A****GG*************T****C-**C**G**ACTC**C*****GT**T**T << 3576481
3557270 >> TCGCCTGCCCGTTCCACGACTGGCGCTGGAGCGGCAACGGCCGGTGCACGGAGATCCCCTACGCCCGCCGGGTGC >> 3557344
3576480 << *******************A*********G*****C*****TT****C*G**G**A***********C******* << 3576406
3557345 >> CGCCGCTGGCGCGGACGCGCACCTGGCACG-CGCTCGA-A-CAGGACGG-CATGCTGTTCGTCTGGCACGACCCC >> 3557415
3576405 << *************G**GTTCC******-**T**T*C**C*A***--***T**-*******T************** << 3576335
3557416 >> GAGGGCAGCAAGCCCACCCCCGAGGTCGCCATCCCGCGCATCGAGGGCGCCGGCGACGACCGCTGGACCGACTGG >> 3557490
3576334 << G*****G*******CG**C*C***G*CT********CTC**AGG*TG*AT***A***GG*C************** << 3576260
3557491 >> CACTGGTACACCACCGTGGTCAAC-AC-CA-ATTGCCGCGAGATCATCGACAACGTCGTGGACATGGCGCACTTC >> 3557562
3576259 << CAC***G*AA*C*A*G*****C*CC*AA*CG*G********T***C***************************** << 3576185
3557563 >> TTCTACATCCACGGCTCGTTGCCGACCTACTTCAAGAACGTCTTCGAAGGCCACATCGCCACCCAGTACTT-CAA >> 3557636
3576184 << ******C*C***AT*CCGT**********A***GCG*****C********C**A*G**********GA*T*C*CA << 3576110
3557637 >> GAGCGGC-GCCCGC-GACGACTTCCCGGCCC-CGG-AAGGCCAGCCGA-CCATGC-TCGGCACCTCCT-CGGTGG >> 3557704
3576109 << AG***G*G**C***G****GCC**CC**A*TC*TGG**GT**-*A***A**CT**T***TT*C-**C*A*G*TG* << 3576037
3557705 >> CCTCCTACTACGGGCCCTCGTTCATGATCGACGACCTG---ACCTATCACTTCGAGTACGGCGATCAGCGCACCG >> 3557776
3576036 << **T****A*****G**C**G*T**********T*TA**ACC*C*CGC**C*T**GGC*CG****CC*T*G**T*T << 3575962
3557777 >> TG--C-TGCTCAACTGCCACTATCCGATCGACGCGAACTCGTTCGTGTTGCAGTACGGCATCATCGTCGAGAAGG >> 3557848
3575961 << *GAT*G**T********************TG*G***G***G***GC*G*G*********C*C*****C******G << 3575887
3557849 >> CGCCCGGCCTGCCCGAGGAGGCCGCGAT-GCAGACGGCGGTGGCGCTGGGCGACTGGG--TCAAGATCGGGTTCG >> 3557920
3575886 << **CA****T**CT***G********G*TG**-**A*****GG**GC*G***--*C***GT**CG******A**** << 3575815
3557921 >> AGCAGGACGTCGAGATCTGGAAGAACAAGGCGCGCATCGACAATCCGCTGCTGTGCGAGGAGGACGGCCCGGTCT >> 3557995
3575814 << **********CG*******************************************A*****************C* << 3575740
3557996 >> ACCAGCTGCGCCGCTGGTACGAGCAGTTCTACGTCGACGTCGCCGACGTGACCCCGGAAATGGTGGATCGCTTCG >> 3558070
3575739 << **********A*******************************TC***T*G**C**G******TGGT*G**C**** << 3575665
3558071 >> AATTCGAGCTCGACAC-GACCAAGCCGCTGGAGGCGTGGCAGGCC >> 3558114
3575664 << *C******T*******G**T*CG**-****G**TTG********* << 3575621
Statistics
Matches: 813 (74.25%), Mismatches: 241 (22.01%), Indels: 41 (3.74%)
ATpairs: 33.58%, CGpairs: 66.42%, GTpairs: 0.00%
:i = 3575758
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 7133711
highcenter: 7133759
testcenter: 7133735
im3: 75.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3614377 center: 7110094 interval size: 300 g: 3
Alignment explanation
Indices: 3495582--3495823,3614271--3614515 Loop: 118447 Score: 86
Left Length: 242 Right Length: 245 Average length: 243.5
3 most common centers (desc): 7110097 7110094 7110095
3495572 >> (LF) GATCGCGCTG
3614525 << (RF) CTGGCGACAG
3495582 >> GTCACCGGCGCGGCGTCG-GGCATCGGCAAGGCCATCGCCGCGCGGCTGGCCGCCGAGGGCGCGTGCGTGGTGGT >> 3495655
3614515 << ***********G**G-**G*********CG**C*******GC***G***********G***TA*CG***G*GG** << 3614442
3495656 >> CGCCGACCGCGACGGAGCGAAGGCGGCCGA--GGTCG-CG-GCCGAGCTCGGCT-CGGCCGACGTGGCGATCGGC >> 3495725
3614441 << CTA*****A*****-**-*GG*G*A**TT*GG*****A**T**T**A*GT***GC***C**C*TGG*******G* << 3614369
3495726 >> GTGGCCGCCGACGTCACCGATGAGGG-GCAGGTCCGGGCCGCCGTCGACGCGGCCGTGCTCGC-GT--TCGGCG- >> 3495797
3614368 << ****C*********CC****G**T*GG**G*-**CGG**C********-****CA*-**-***G*TTG******G << 3614298
3495796 >> GCCTGGACC-TGGTCGTCAACAACGCCGG >> 3495823
3614297 << ***G--***C**A*C***********C** << 3614271
Statistics
Matches: 178 (70.08%), Mismatches: 55 (21.65%), Indels: 21 (8.27%)
ATpairs: 19.66%, CGpairs: 80.34%, GTpairs: 0.00%
:i = 3614377
tupleindex: 3
intervalindex: 1
matches_in_interval: 131.0000
lowcenter: 7110070
highcenter: 7110118
testcenter: 7110094
im3: 44.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3614471 center: 6876103 interval size: 600 g: 3
Alignment explanation
Indices: 3261586--3261836,3614267--3614517 Loop: 352430 Score: 101
Left Length: 251 Right Length: 251 Average length: 251.0
3 most common centers (desc): 6876103 6876104 6876105
3261576 >> (LF) AGCGTCGTCC
3614527 << (RF) TGCTGGCGAC
3261586 >> TCGTCACCGGCGGCGGGCGCGGAATCGGCCGCGG-CATCGCCCTGCGCCTGGCCCGCGACGGCCACGACC-TCGC >> 3261658
3614517 << ************G**GG*****G******-****C********C**********CG*******-*A*C**C**** << 3614445
3261659 >> GCTCGTCGACCTCGACCCGTCCACGCT-CGCCGCGGTCGCCGACGAAATCCGCGAGAC-CGGCCGGG-CGGCAA- >> 3261731
3614444 << GC*CT***********CT*C**C*-**C*TTTG******A***CG*C****T-*-*G*C***C***GT*G**C*A << 3614373
3261730 >> CGACCTTCGTCGCCGACGTGAGCGACCGCGATCAGGTGTT-C-GCCGCCGTCGACCACGCGTACACCGCGCTCGG >> 3261802
3614372 << **-**C*C*C**********CG****-*T-*C*G*GG**GC*G**C********C*CC*A*CG*C***TT***** << 3614301
3261803 >> CGGATTCGACGTGATGGTGAACAACGCGGGCATC >> 3261836
3614300 << **GCGG*TG****A****G************C** << 3614267
Statistics
Matches: 182 (70.27%), Mismatches: 61 (23.55%), Indels: 16 (6.18%)
ATpairs: 21.98%, CGpairs: 78.02%, GTpairs: 0.00%
:i = 3614471
tupleindex: 3
intervalindex: 2
matches_in_interval: 227.0000
lowcenter: 6876069
highcenter: 6876137
testcenter: 6876103
im3: 62.0000
frequent_center_ratio*rnkp: 41.4200
Found at i: 3615293 center: 6876880 interval size: 300 g: 3
Alignment explanation
Indices: 3261586--3261647,3615233--3615294 Loop: 353585 Score: 59
Left Length: 62 Right Length: 62 Average length: 62.0
3 most common centers (desc): 6876880 0 0
3261576 >> (LF) AGCGTCGTCC
3615304 << (RF) TCCTGGCGCT
3261586 >> TCGTCACCGGCGGCGGGCGCGGAATCGGCCGCGGCATCGCCCTGCGCCTGGCCCGCGACGGC >> 3261647
3615294 << ************G*T*G*****G*******AC*G******C*T********ACCT******* << 3615233
Statistics
Matches: 49 (79.03%), Mismatches: 13 (20.97%), Indels: 0 (0.00%)
ATpairs: 18.37%, CGpairs: 81.63%, GTpairs: 0.00%
:i = 3615293
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 6876856
highcenter: 6876904
testcenter: 6876880
im3: 33.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3630566 center: 7018323 interval size: 300 g: 3
Alignment explanation
Indices: 3387757--3387797,3630526--3630566 Loop: 242728 Score: 40
Left Length: 41 Right Length: 41 Average length: 41.0
3 most common centers (desc): 7018323 7018324 0
3387747 >> (LF) CGGCGGCATG
3630576 << (RF) CGCTCGACCA
3387757 >> CGCGGCGGCCAACGCGGCGGCAGCCTGCG-CGCCGATGTCGG >> 3387797
3630566 << **********GCC******A*C**C-***C************ << 3630526
Statistics
Matches: 34 (80.95%), Mismatches: 6 (14.29%), Indels: 2 (4.76%)
ATpairs: 8.82%, CGpairs: 91.18%, GTpairs: 0.00%
:i = 3630566
tupleindex: 3
intervalindex: 1
matches_in_interval: 120.0000
lowcenter: 7018299
highcenter: 7018347
testcenter: 7018323
im3: 31.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3639397 center: 6819028 interval size: 300 g: 3
Alignment explanation
Indices: 3179613--3179738,3639290--3639415 Loop: 459551 Score: 73
Left Length: 126 Right Length: 126 Average length: 126.0
3 most common centers (desc): 6819028 6819027 0
3179603 >> (LF) GGGCCGCAAC
3639425 << (RF) GCACTGGCTC
3179613 >> GACATG-CGGATCTTCCAGGAGGAGATCTTCGGTCCGGTCGTCTCGGTG-ACCACCTTCGACTCGGTCGACGAGG >> 3179685
3639415 << **C***T***-***T**C********G******C************T*GA***CCC*-**G*CTG*TC****GG* << 3639343
3179686 >> CGATCTCCATCGCCAACGACACCCTCTACGGTCTGGGTGCGGGCGTGTGGACC >> 3179738
3639342 << **C**CTCCG**************G*********GTTG**GT*********** << 3639290
Statistics
Matches: 93 (72.66%), Mismatches: 31 (24.22%), Indels: 4 (3.12%)
ATpairs: 31.18%, CGpairs: 68.82%, GTpairs: 0.00%
:i = 3639397
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 6819004
highcenter: 6819052
testcenter: 6819028
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3640125 center: 6878502 interval size: 300 g: 3
Alignment explanation
Indices: 3238377--3238523,3639979--3640125 Loop: 401455 Score: 56
Left Length: 147 Right Length: 147 Average length: 147.0
3 most common centers (desc): 6878502 6878503 6878501
3238367 >> (LF) CTGTTCTCCT
3640135 << (RF) TGGGTCCAGC
3238377 >> ACGTGCTCTATCCGCCCGC-GGGCGTGGTCTCGGCGATCAGCCCGTGGAACGCGCCGCTGATGCTGGCGACCTG- >> 3238451
3640125 << *******CG*-***C***TT***A******C***A****AGC*********ATG******CGT*****GC***GG << 3640052
3238450 >> GAAGATCGC-GCCCGCCTTGGCATTCGGCAACACCGCCGTGCTCAAGCCCGCCCCG-CAGACCCCGCTCACCGCG >> 3238522
3640051 << **G*--***A*******G***AGCGC******C***ACT*-*C*GG*****CT*TTA******C*********** << 3639980
3238523 >> C >> 3238523
3639979 << * << 3639979
Statistics
Matches: 105 (69.54%), Mismatches: 38 (25.17%), Indels: 8 (5.30%)
ATpairs: 21.90%, CGpairs: 78.10%, GTpairs: 0.00%
:i = 3640125
tupleindex: 3
intervalindex: 1
matches_in_interval: 111.0000
lowcenter: 6878478
highcenter: 6878526
testcenter: 6878502
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3656961 center: 6918549 interval size: 300 g: 3
Alignment explanation
Indices: 3261579--3261677,3656871--3656970 Loop: 395193 Score: 62
Left Length: 99 Right Length: 100 Average length: 99.5
3 most common centers (desc): 6918549 6918550 6918548
3261569 >> (LF) CGGCATGAGC
3656980 << (RF) CCTCCCTGCC
3261579 >> GTCGTCCTCGTCACCGGCGGCGGGCGC-GGAATCGGCCGCGGCA-TCGCCCTGCGCCTGGCC-CGCGACGGCCAC >> 3261650
3656970 << ****GC**C**********-*****T*G**G********-**T*G*C****C**AC**G***C****-****CG* << 3656899
3261651 >> GACCTCGCGCTCGTCGACCTCGAC-CCG >> 3261677
3656898 << G**C*C**GC********T*****C*** << 3656871
Statistics
Matches: 77 (74.76%), Mismatches: 19 (18.45%), Indels: 7 (6.80%)
ATpairs: 20.78%, CGpairs: 79.22%, GTpairs: 0.00%
:i = 3656961
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 6918525
highcenter: 6918573
testcenter: 6918549
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3656965 center: 7152543 interval size: 300 g: 3
Alignment explanation
Indices: 3495570--3495823,3656726--3656973 Loop: 160902 Score: 84
Left Length: 254 Right Length: 248 Average length: 251.0
3 most common centers (desc): 7152543 7152549 7152546
3495560 >> (LF) GCTGGCCACC
3656983 << (RF) GGACCTCCCT
3495570 >> CGGATCGCGCTGGTCACCGGCGCGGCGTCGGGCATCGGCAAGGCCATCGCCGCGCGGCTGGCCGCCGAG-GGCGC >> 3495643
3656973 << ***C*********************CGT*G*********GC**TTG*C***GC**A***G*****-*G*G***** << 3656900
3495644 >> GTGCGTGGTGGTCGCCGACCGCGACGGAGCGAAGGCGGCCGAGGTCGCGGCC-GAGCTCGGCTCGGCCGACGTGG >> 3495717
3656899 << GGT*****GG****A****TA*****GG**G--*-*******TAG*******G*A*T**A**C*TA***-**-** << 3656830
3495718 >> CGATCGGCGTGGCCGCCGACGTCACCGAT-GAGGGGCAGGTCCGGGCCGCCGTCGACGCGGCCGTGCTCG--CG- >> 3495790
3656829 << A-*-**G***G********A**CGC***GG***G***GT-*C**G**C*******G*-***--****C**TT*TG << 3656761
3495789 >> TTCGGCGGCCTGGACCTGGTCGTCAACAACGCCGG >> 3495823
3656760 << ******G**T*G**AC****C***CG***A***** << 3656726
Statistics
Matches: 180 (69.23%), Mismatches: 62 (23.85%), Indels: 18 (6.92%)
ATpairs: 17.78%, CGpairs: 82.22%, GTpairs: 0.00%
:i = 3656965
tupleindex: 3
intervalindex: 1
matches_in_interval: 106.0000
lowcenter: 7152519
highcenter: 7152567
testcenter: 7152543
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3700659 center: 7315599 interval size: 300 g: 3
Alignment explanation
Indices: 3614569--3615307,3700283--3701030 Loop: 84975 Score: 330
Left Length: 739 Right Length: 748 Average length: 743.5
3 most common centers (desc): 7315599 7315590 7315596
3614559 >> (LF) CGATGTGGTT
3701040 << (RF) CCCTGCGGCT
3614569 >> GTCAGACGCCGCCGGTCAGGGTG-ATGCCGCCGTCGAGGACGAGGAG-CTGGCCGGTGATCCAGGCGGCGTCGTC >> 3614641
3701030 << ******AA*****G**C-*G*T*G*C***********GG-**GTGG*A**G******************G***** << 3700958
3614642 >> GGAGAGCAGGAACGCC-ACCGCACCCGCGATGTCCTCGGGCACGCCGAGCCGCTTCAGCGGATAG--GTTC-CGG >> 3614712
3700957 << ****CG******-***C*A*TCC*CC****G*********CGA**************A***C**GTG*G**C*G* << 3700884
3614713 >> CGAGTTCCTGTTCGCGGCCCTCGTAGAGCGCGGTGGCGAACTTCGTCTTCACCACGGCCGGGGCGACCGCGTTGA >> 3614787
3700883 << *GG******GC***-*-**CT-***G******AG*********C*****C******G****G**G********** << 3700812
3614788 >> CGCGCAGGTCCGGCCCGAGTT-CCACGGCCAGTTCCTGGGTGAGGTAGGTCAGCATGGCCTTGCTGGCGCCGTAG >> 3614861
3700811 << *G**C*AG*A***C**G**G*C***-******G****G******GGC*T****CCG*******CTG**T****** << 3700738
3614862 >> AAGCCGATCCCGGGCGCCGGTTTGATCCCGGCCACCGAGGACACGTTGACCACCGCGCCGCCGTGTTCGGCCATC >> 3614936
3700737 << CG*C****CT**GGC*A**TCGCG*CC**G*****CGA**GC********C*AC***********G***G***** << 3700663
3614937 >> CACGCCTTGTGCGCGCGCTGGGTCCACGACAGCGCGGCCAGGCA-GTTGACCTCGATGATCTTGCGCGCCGCGGC >> 3615010
3700662 << **********T***GAG*****GCA*TGGC**********G-**G******C****T**********T*****A* << 3700589
3615011 >> CAGGTCCATGTCGATCAGCGCACCGTAGACCGGGTTGATCCCGGTGTTGTTGACCAGCAGGTCG-GCGCCGCCGA >> 3615084
3700588 << ******CCG***G********G***T*G***********C*************A***C*A***GT***TT-**** << 3700515
3615085 >> AGGTCTCGATCGCCCGCGCGACGGTCTCCTCCTGGTGCTCGAG-GTCGTCGGCACGT-CCGGCGACGC-CG--AG >> 3615154
3700514 << *GAG*CA**G***A***G****G*G****C*CG**CG**-*G*G***TG***-*CA*C**G****A*CA**GG*G << 3700442
3615155 >> CGCGTGCTC--GGCCCCG--C-C-CAGCT-GCCGGACCGCCTCGTCGAGGGCGTCCTGCTTGCGCGCGGTGATCA >> 3615222
3700441 << *A**GG**CTA****CT*CC*C*C***A*G*C***-*C******C*G**G*CA**CC*A*****A**G******* << 3700368
3615223 >> CCACCTTCGCGCCGTCGTC-CACCAGGCGCTGC-GCGATGGCCAGGCCGATGCCGCGGCTGGCGCCGGTGACGAT >> 3615295
3700367 << C***C*****G***-**C*C**C**T-*A*G**G**G*GG***AA******T**G************G****G*C << 3700295
3615296 >> CGCGGTCCTGCC >> 3615307
3700294 << ****G**A**** << 3700283
Statistics
Matches: 538 (70.60%), Mismatches: 187 (24.54%), Indels: 37 (4.86%)
ATpairs: 28.62%, CGpairs: 71.38%, GTpairs: 0.00%
:i = 3700659
tupleindex: 3
intervalindex: 1
matches_in_interval: 102.0000
lowcenter: 7315575
highcenter: 7315623
testcenter: 7315599
im3: 66.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3722371 center: 7444672 interval size: 40 g: 1
Alignment explanation
Indices: 3722301--3722328,3722344--3722371 Loop: 15 Score: 41
Left Length: 28 Right Length: 28 Average length: 28.0
3 most common centers (desc): 7444672 0 0
3722291 >> (LF) CCACCGGCGA
3722381 << (RF) CTCGCGCCCC
3722301 >> ACCGCTGACCCGGTATCGGCGAACGGCC >> 3722328
3722371 << *****G**CC****************** << 3722344
Statistics
Matches: 25 (89.29%), Mismatches: 3 (10.71%), Indels: 0 (0.00%)
ATpairs: 28.00%, CGpairs: 72.00%, GTpairs: 0.00%
:i = 3722371
tupleindex: 1
intervalindex: 2
matches_in_interval: 35.0000
lowcenter: 7444664
highcenter: 7444680
testcenter: 7444672
im3: 23.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3753337 center: 7035639 interval size: 300 g: 3
Alignment explanation
Indices: 3281473--3282539,3753100--3754151 Loop: 470560 Score: 484
Left Length: 1067 Right Length: 1052 Average length: 1059.5
3 most common centers (desc): 7035630 7035639 7035624
3281463 >> (LF) CCAGCCGCGC
3754161 << (RF) ACTTGCGCTC
3281473 >> GGCGCGGACATGCTCTACTCCTCCGGCACCACCGGCCGGCCCAAGGGCATCAAGCAGCCGCTGCCGCAG-CGCCA >> 3281546
3754151 << ****A***AG****C********C************T*******T***C*CCA*CG*CT********A*C****- << 3754078
3281547 >> GGTCGGCGACGCA-CCCGGCGACACCTACACCGCCATCTTCGGCCCGCTCTACGGTTTCGGCAC-CGAGACCGTC >> 3281619
3754077 << *G*C***-****GC*****A*A*C*CCC-**A**AC-*T-*T***C*-*CCC-**T*-***-**C***G*C**** << 3754011
3281620 >> TACCTCTCCCCCGCACCGTTGTATCACGCGGCGCCACTGCGGTTCGGCGGCGT-GGTGCACGCCTTGGGCGGCAC >> 3281693
3754010 << *****C*****C**C***G**********G*****G**G******T-**TA*TG*******GC***G******** << 3753937
3281694 >> CGTCGTCGTGATGGAGAAGTTCGACGCCGAGGCCGCGCTGGCCGCGATCGAGCGCTACCGCGTCACGCACAGCCA >> 3281768
3753936 << ***CT****G******GC***************C********C********T**C*****C**C*******GC** << 3753862
3281769 >> GTGGGTGCCGACGATGTTCGTGCGCATGCTCAAGCT-C--GACGAGCAGGTGCGCACGCGCTACGACGTGTCCAG >> 3281840
3753861 << *TA****************T*G**C********T**C*GG*****T***G-*-**A-***C******G****C*G << 3753790
3281841 >> CCTGAAGGTGGCCGTGCACGCGGCCGCCCCGTGCCCGATCGACGTCAAGCGCGCGATGATCGACTGGTGGGGGCC >> 3281915
3753789 << ****GCGTGG*A*T*G***********C**G**A***GGC***TG*********G********A***GA***G** << 3753715
3281916 >> GATCCTGCACGAGTACTACGCCTCCACCGAGGCCAACGGCGCCACCTTCATCGACAGCGAGC-AGTGGTTGCGCA >> 3281989
3753714 << G***C*********A***AA*C*C***C***TT*CG*GACAA***CCGCA*C***A-**GT*C*T***G**CG*G << 3753641
3281990 >> AGCCCGGCTCGGTCGGCAAGGCGGGGCTCGGCGTCATC-CGGATCTGCGGCGA-GGACGGCAAGGAACTGCCCAC >> 3282062
3753640 << *G*****T********CGCG***TAG*****-*T*GG*C*TG***GA**T***G***-***GC***CA****CG* << 3753568
3282063 >> GGGCGAGGTCGGCACGGTGTACTTCGAGCGCGAGGACGTGCCCTTCGCCTACCACAACGACCCGGCCAAGACCGC >> 3282137
3753567 << G*****TGGC******T*G*CC*G***TC***-**-*-**TAC****TC****AC*****A************** << 3753496
3282138 >> CGACGCGGTCCATCCCGACCATCCCACCTGGACGACCACCGGCGACATCGGCTACGTCGACGACGAGGGCTACCT >> 3282212
3753495 << C*-*-*--**C--*C*T**C*C*CCCC**********CA************A***G*******C**G******** << 3753427
3282213 >> GTTCCTCACCGACCGCAAGGC-GTTCATGATCATCTCCGGCGGCGTGAACATCTACCCGCAGGAGATCGAGGACG >> 3282286
3753426 << **TA**CC*C******GCA**G*T**-*G***G*C********C**G***C*********CG***CG******** << 3753353
3282287 >> CACTCGCCCTGCACCCCAAGGTGTTCGACGTCGCGGTGATCGGCGTGCCCG-ACGAGGAGATGGGCGAA-TCGGT >> 3282359
3753352 << *G****A*C****A********GCG*****GC******A*****T*-****G****G**TG*G**A***C***GC << 3753279
3282360 >> CAAGGCCGTCGTCCAGCCCGCGCCCGGCGCCGAACCCGGCCCCGACCTGGCCGCCGAACTGCGCGACTACCTGCG >> 3282434
3753278 << **G*-****C***CA**************A**GC****TAC*C*GC*******C****A***A**GC******** << 3753205
3282435 >> CGAGCGCATCGCCCACTACAAGGTGCCC-CGCAGTTTCGACTTCGCCGACG-ACCTGCCACGCACCCCCACCGGC >> 3282507
3753204 << ******TG*C***CCA******-*****C***CGGT*********T-*G**C*TA****G***C*CC*C****** << 3753132
3282508 >> AAACTCGTCAAGGGAAAGCTGCGCGCCCGGTA >> 3282539
3753131 << **C***AT****G*CCA******A*TC***** << 3753100
Statistics
Matches: 764 (70.61%), Mismatches: 273 (25.23%), Indels: 45 (4.16%)
ATpairs: 29.32%, CGpairs: 70.68%, GTpairs: 0.00%
:i = 3753337
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 7035615
highcenter: 7035663
testcenter: 7035639
im3: 59.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3755728 center: 7309796 interval size: 300 g: 3
Alignment explanation
Indices: 3553929--3554352,3755447--3755867 Loop: 201094 Score: 158
Left Length: 424 Right Length: 421 Average length: 422.5
3 most common centers (desc): 7309796 7309799 7309797
3553919 >> (LF) CTCGGCACGG
3755877 << (RF) TAGAGCTGGA
3553929 >> CGATCGAGTACTACGACTTCCTGCTCTACAGCACCA-TGACGGCGCTGGTGTTCAACAAGGTCTTCTTCCCCGAC >> 3554002
3755867 << **G******CC*********A*GT****AAGC***CG**G**-*T***********AAG*TG*******C**-** << 3755795
3554003 >> TCGA-ACCCGG-CG-CTCGGCAC-CATCGCGGCCTTCGGCACGCTGGCCGCCGGATATGTCGCACGGCCGATCGG >> 3554073
3755794 << GC*AC**CT**A**A*C****CCA**T*A**---****G****C******A***G*AGT****G**G******** << 3755723
3554074 >> CGGTGTGCTGTTCGGCCACTTCGGCGACCGCATCGGGCGCAAATCGATGCTCGTG-CTGACCATGCTGCTGATGG >> 3554147
3755722 << ******G**GCG***C**A*********TTC*****T******G**C****C**GT*G*-**C**C********* << 3755649
3554148 >> GCGCGTCGAG-CTTC-CTGATCGGTGTGC-TGCCCACCTACGCCGGTGTCGGCATCCTCGCGCCGCTGCTGCTGG >> 3554219
3755649 << -**-****G*T*GC*C********-**A*C******T*-**-*CT*T-***A*ACC*********C**T*G**** << 3755580
3554220 >> TGTTGCTGCGCGTGGTGC-AGGGCGTGGCGATCGGCGGCG-AGTGGGGCGGGGCCACGCTCATGGTCACCGAACA >> 3554292
3755579 << **TG*******T*G-***G****AG*G***C******-**G*************CCA***CG***G******CT* << 3755507
3554293 >> CGCCGAAC-CGGGTCGTCGCGGTTTCTGGAACGGCATCATGCAGATGGGATCGCCGATCGG >> 3554352
3755506 << ***-*GG*C**GT***C*****T****AGCC*T**A**CG***TA****ACA********* << 3755447
Statistics
Matches: 304 (69.72%), Mismatches: 105 (24.08%), Indels: 27 (6.19%)
ATpairs: 29.93%, CGpairs: 70.07%, GTpairs: 0.00%
:i = 3755728
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 7309772
highcenter: 7309820
testcenter: 7309796
im3: 38.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3774558 center: 7072860 interval size: 300 g: 3
Alignment explanation
Indices: 3298286--3298575,3774285--3774574 Loop: 475709 Score: 81
Left Length: 290 Right Length: 290 Average length: 290.0
3 most common centers (desc): 7072860 7072861 7072862
3298276 >> (LF) TGAGCCGCGC
3774584 << (RF) CCACGGCCTC
3298286 >> GCGATGACGCGCCCGTGGTCGATGACGGTGATCCGGTCGGCGAGCAGATCGGCCTCCTCCAGGTACTGCGTGGTG >> 3298360
3774574 << ****G***G**C*************AGTGG*C*A*******G**AA*G********C****AGTAC********G << 3774500
3298361 >> AGCAGCACCGTCGTGCCGTCCTGGACG-AGTTCGCCGATGACGCGCC-ACATG-TCGAGCCGCCCGCGCGGGTCG >> 3298432
3774499 << ****GC**CG**TG******CG**-**G**GC**A*A*GG*-**A**G*C*G*T**-*****CC*GA*C*G***G << 3774428
3298433 >> AGCCCGGTGGTCGGCTCGTCGAGCACCACCA-C-CGGCGGCCGGGCCACCAGCGCACCGGCGAGATCGAGCCGGC >> 3298505
3774427 << **A**G*G***************C*TC**C*A*A***-***-**G**********C*T***G**GC*G**C**GA << 3774355
3298506 >> GTGCCATACCGCCGGAGTAGGTGCCCGCGCGGCGGTCGGCCGCGTGTTC-G-AGCCCGAGCGCGCCGAGCAG >> 3298575
3774354 << **AC*ACG********G-***G***CTATC****AC**-***CA***G*A*G**C*******A**CG***** << 3774285
Statistics
Matches: 200 (67.34%), Mismatches: 83 (27.95%), Indels: 14 (4.71%)
ATpairs: 25.50%, CGpairs: 74.50%, GTpairs: 0.00%
:i = 3774558
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 7072836
highcenter: 7072884
testcenter: 7072860
im3: 72.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3774679 center: 7427359 interval size: 300 g: 3
Alignment explanation
Indices: 3652655--3652983,3774376--3774703 Loop: 121392 Score: 107
Left Length: 329 Right Length: 328 Average length: 328.5
3 most common centers (desc): 7427359 7427358 7427360
3652645 >> (LF) CTCGCAGGAT
3774713 << (RF) CGTCGGCCCG
3652655 >> GAGGGCTTCGTCGTCGCGGGT-CGCCTCGGGCAGCGCCCGC-GCGGCGGCGTCGAGGGTG-GCGGCGTCGGCGAA >> 3652726
3774703 << ****A**-**-***C***G*TT*G*************T*A*A**TT*T*C*G*-***AGGT**G***C*****GC << 3774632
3652727 >> GCGGAGCCGGATGTGGCTGCCG-GGCACGCG-GCGCT-TGAGTTCGTCGGCGGTGCCCTCGGCAACCAGGTGGCC >> 3652798
3774631 << *A*T*-***G*CG****--***G***C*-**A****CC***GG***C***C******CCT***C**C*GGG**** << 3774561
3652799 >> CTGGTCGAGCACCGCGATCCGGTCGGCCAGATGATCGGCCTCCTCGAGGTACTGGGTGGTGAGGAAGATCG-TCA >> 3652872
3774560 << C*******AC*A*T*G*C*A**********A**G********C**G*AGTAC**G*****G**G*G**-**G*** << 3774487
3652873 >> CCCCGTCGGCAGT-CAGGTCCCG-C-ACGATGTCCCACAGCATGCGGCGG-C-TGCGCGGGTCCAGGCCCGTGGT >> 3652942
3774486 << *C******-*C*GC***--*C**A*A**G*CG*****C*GC**GT*G***C*G**C***--*****A****G*** << 3774417
3652943 >> CGGCTCGTCGAGAAAGACGATCTGCGGGCGGGTCACCAGCG >> 3652983
3774416 << ************C**********GC******GG******** << 3774376
Statistics
Matches: 236 (69.21%), Mismatches: 80 (23.46%), Indels: 25 (7.33%)
ATpairs: 25.00%, CGpairs: 75.00%, GTpairs: 0.00%
:i = 3774679
tupleindex: 3
intervalindex: 1
matches_in_interval: 118.0000
lowcenter: 7427335
highcenter: 7427383
testcenter: 7427359
im3: 65.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3882552 center: 7765065 interval size: 40 g: 1
Alignment explanation
Indices: 3882510--3882532,3882533--3882555 Loop: 0 Score: 46
Left Length: 23 Right Length: 23 Average length: 23.0
3 most common centers (desc): 7765065 0 0
3882500 >> (LF) ACTAGCGCCC
3882565 << (RF) CGGGTGGCGC
3882510 >> GACCGCGAAACGCCCGCTCACGA >> 3882532
3882555 << *********************** << 3882533
Statistics
Matches: 23 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 30.43%, CGpairs: 69.57%, GTpairs: 0.00%
:i = 3882552
tupleindex: 1
intervalindex: 2
matches_in_interval: 20.0000
lowcenter: 7765057
highcenter: 7765073
testcenter: 7765065
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3896613 center: 7530834 interval size: 300 g: 3
Alignment explanation
Indices: 3634219--3634484,3896353--3896615 Loop: 261868 Score: 190
Left Length: 266 Right Length: 263 Average length: 264.5
3 most common centers (desc): 7530834 7530837 7530838
3634209 >> (LF) CAACGGCGTC
3896625 << (RF) GCGGCGCGGC
3634219 >> GGCGGCACCGATTCCGGGCCCG-CGGCGATCTTCGCCTTCCAATACGCCTACTACGTGCAACGCTCGGCCGAGCT >> 3634292
3896615 << *********TGG**********T**G**AC**-**C*********************GC****A**G*C*****C << 3896542
3634293 >> GGCCAGGGCGGTGGTCGCCCCCGACGCCGCGGTGCCGACCGTGGCCGAGATCCAGCGCGGCATCGATTCGGTGCC >> 3634367
3896541 << G******GT*A*G*****T****G************GC*C*GT**C*A*********C**C*****G***T*G** << 3896467
3634368 >> GGCCGACACCATCCACTGCGTGACGATCAGCCCCGGCGCCGGTGCCGACCA-GTACCGCG-TGGTGATCACCGAA >> 3634440
3896466 << G**C*C*****GC*********GC****-***C**-*A*-**G*T*-****A****-***C***T*C*******C << 3896397
3634441 >> TACCGGCCGGGCCAGGCCCCGGTCAGCTACAACCCGCAGGTGGT >> 3634484
3896396 << ************CCG**C**G*G**GC******TT****T**** << 3896353
Statistics
Matches: 203 (75.46%), Mismatches: 57 (21.19%), Indels: 9 (3.35%)
ATpairs: 27.09%, CGpairs: 72.91%, GTpairs: 0.00%
:i = 3896613
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 7530810
highcenter: 7530858
testcenter: 7530834
im3: 68.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3904440 center: 7626517 interval size: 300 g: 3
Alignment explanation
Indices: 3721985--3722239,3904278--3904532 Loop: 182038 Score: 128
Left Length: 255 Right Length: 255 Average length: 255.0
3 most common centers (desc): 7626517 7626518 7626519
3721975 >> (LF) CCTGCGCAAC
3904542 << (RF) CTAGGCACGC
3721985 >> CAGCTGGCCCGGCTCCTGCTGCGCGGCGCGGCCGTGGACCGGCCGGTGTCGACAT--TGTCCGGCGGTGAGCGCT >> 3722057
3904532 << **T***********C***A*G**A*****G*T**GG***-*A**G*-*G**G*C*CG****C*****C*****CG << 3904460
3722058 >> TCCGTGTGTCGCTGGCGCGGCTGCTGTTCGCCGACCCACCCGC-GCAGCTGCTCGTCCTGGACGAACCGACGAAC >> 3722131
3904459 << *C**G*G*C*G*****GTA*******G*C*****C**-*C***G*T*******CG*C**G***********G*** << 3904386
3722132 >> AACCTCGACATCGCC-AGCGT-CGAACAGCTGGTGGCGGCGCTGTCGGGGTACCGAGG-CGCGGTCCTGGTGGTC >> 3722203
3904385 << ********AG*-***C***G*C**C-**G***TG*GT*******C*G****A*-****C****G*CC******** << 3904314
3722204 >> AGTCACGACGAGCAATTCCTCGCCGACCTCGGCGTC >> 3722239
3904313 << **G*****AGG**CC*****C*T***CT****T*** << 3904278
Statistics
Matches: 187 (71.65%), Mismatches: 62 (23.75%), Indels: 12 (4.60%)
ATpairs: 27.81%, CGpairs: 72.19%, GTpairs: 0.00%
:i = 3904440
tupleindex: 3
intervalindex: 1
matches_in_interval: 115.0000
lowcenter: 7626493
highcenter: 7626541
testcenter: 7626517
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3905311 center: 7626508 interval size: 300 g: 3
Alignment explanation
Indices: 3720894--3721359,3905149--3905630 Loop: 183789 Score: 139
Left Length: 466 Right Length: 482 Average length: 474.0
3 most common centers (desc): 7626508 7626523 7626507
3720884 >> (LF) GACGTCGCCG
3905640 << (RF) GTGGCACGCG
3720894 >> GGCCGG-TCGGCTACCTGCCGCAG-ACGCTGACCCTCGACACCGACGCC-A-CG-ATCGCCGACCTGCTCGGCAT >> 3720963
3905630 << ******G****C**A****CG***C**-**GCC*****-*-*-******G*C**G****T*G****G******** << 3905560
3720964 >> CGCCGACACGCTCGCGGCACTGCGCGCG-ATCGAGTCCGGCGACGCGGACGAACGAC-ACTTCGACA-CGATCGG >> 3721035
3905559 << ******C*AG*C***********T*-**G*****TC*C**T*G***G*G***C-***C********CA**-**** << 3905488
3721036 >> CGAGGACTGGGATCTGGA--AGCGCGCGC-GGC-C--CAGGCGCTGCACGAGATCG-GC-T-TCGCCG-CA--G- >> 3721099
3905487 << A*GG*G******GC*G**CC****C***CA***C*AC*A***G*C**A**CGG*C*G**T*G******T*AGG*A << 3905413
3721099 >> --CCGATCTCGATCGCCGGGTCGGCCAACTGTCCGGCGGCGAGGCGGTGCTGGTCGCCGTCACCGGGTTGCGC-C >> 3721169
3905412 << CC***GT***********GG***T*TGG***************T********G***C-*-*A--**G*CG**TT* << 3905342
3721170 >> TGCGC-CGGACACCC-GTCACCG-TCCTCGACGAGCCCACCAACAACCTCGACCGGGCCGCGCGC-AGCGAC-CT >> 3721239
3905341 << ***A*C*G***G**CT*CACAA*G*C***********C***********C**A**A**A******C*T**G*A** << 3905267
3721240 >> GGCCACGCTGATCGA-CACCTGGCCCGGCACCCTGGTGGTGGTCAGCCACGATCGCGCGCTGCTCGAGCGCATGG >> 3721313
3905266 << T-*C***AG*-****C**CA*GA**-*T****C**G*G*G***C********G**C*T*************CGG* << 3905195
3721314 >> ACCACACCGCGGAGCTGCACGCCGAGCGGCTGGAGTTGTTCGGCGG >> 3721359
3905194 << **CG**A***G*******C**TC*C*CT***TGC*G********** << 3905149
Statistics
Matches: 343 (69.15%), Mismatches: 109 (21.98%), Indels: 44 (8.87%)
ATpairs: 25.66%, CGpairs: 74.34%, GTpairs: 0.00%
:i = 3905311
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 7626484
highcenter: 7626532
testcenter: 7626508
im3: 56.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3933495 center: 7866336 interval size: 80 g: 2
Alignment explanation
Indices: 3932825--3932880,3933456--3933511 Loop: 575 Score: 63
Left Length: 56 Right Length: 56 Average length: 56.0
3 most common centers (desc): 7866336 7866335 0
3932815 >> (LF) GTGGTCCCAG
3933521 << (RF) CACGCGCTAT
3932825 >> CTGGGATCGAACCAGCGACCT-TCCGCGTGTGAGGCGGA-CGCTCTCCCGCTGAGCTA >> 3932880
3933511 << *******A*******A*****G*A*-*****G***-*T*C****************** << 3933456
Statistics
Matches: 49 (84.48%), Mismatches: 5 (8.62%), Indels: 4 (6.90%)
ATpairs: 38.78%, CGpairs: 61.22%, GTpairs: 0.00%
:i = 3933495
tupleindex: 2
intervalindex: 1
matches_in_interval: 39.0000
lowcenter: 7866324
highcenter: 7866348
testcenter: 7866336
im3: 28.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 3941888 center: 7715950 interval size: 300 g: 3
Alignment explanation
Indices: 3773974--3774129,3941821--3941976 Loop: 167691 Score: 75
Left Length: 156 Right Length: 156 Average length: 156.0
3 most common centers (desc): 7715950 7715949 7715951
3773964 >> (LF) GTCGAGGACG
3941986 << (RF) CAGCGGCCAG
3773974 >> TCGCCAA-ACACTTCGGCGAGACGGCCGCGGTGGACGGGCTGAGC-TTCGAGGTCGA-GCCGGCCCAGGTGCTCG >> 3774045
3941976 << **T****C***-*******G*CAG*A******G****TA***-**C***TGG***GGG*T****C*G*AGT*-** << 3941905
3774046 >> CGCTGC-TCGGCCCCAACGGCGCGGGCAAGACCACCACGGTGCAGATG--TGCGAGGGTTTCGTCCGACCCGACG >> 3774117
3941905 << -***A*G*******C***************A*******GT***-*G**GG***AG**-*G***T**AC******* << 3941833
3774118 >> CGGGCCGGGTGC >> 3774129
3941832 << ****C******* << 3941821
Statistics
Matches: 117 (72.22%), Mismatches: 33 (20.37%), Indels: 12 (7.41%)
ATpairs: 23.93%, CGpairs: 76.07%, GTpairs: 0.00%
:i = 3941888
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 7715926
highcenter: 7715974
testcenter: 7715950
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 3954762 center: 7909477 interval size: 40 g: 1
Alignment explanation
Indices: 3954715--3954737,3954740--3954762 Loop: 2 Score: 41
Left Length: 23 Right Length: 23 Average length: 23.0
3 most common centers (desc): 7909477 0 0
3954705 >> (LF) AGGAAAGCGA
3954772 << (RF) CAGCTTGTGC
3954715 >> CACCGCCCGGCGCATGCCCCTGG >> 3954737
3954762 << ********************G** << 3954740
Statistics
Matches: 22 (95.65%), Mismatches: 1 (4.35%), Indels: 0 (0.00%)
ATpairs: 13.64%, CGpairs: 86.36%, GTpairs: 0.00%
:i = 3954762
tupleindex: 1
intervalindex: 2
matches_in_interval: 24.0000
lowcenter: 7909469
highcenter: 7909485
testcenter: 7909477
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 3985579 center: 7481161 interval size: 300 g: 3
Alignment explanation
Indices: 3495576--3495684,3985477--3985585 Loop: 489792 Score: 57
Left Length: 109 Right Length: 109 Average length: 109.0
3 most common centers (desc): 7481161 7481162 0
3495566 >> (LF) CACCCGGATC
3985595 << (RF) TCCGTTCTTC
3495576 >> GCGCTGGTCACCGGCGCGGCGTCGGGC-ATCGGCAAGGCCATCGCCGCGC-GGCTGGCCGCCGAGGGCGCGTGCG >> 3495648
3985585 << **T***********T*-*AT*G****CC**T**CCG***C*****-****G*******C***********GCT** << 3985513
3495649 >> TGGTGGTCGCCGACCGCGACGGAGCGAA-GGCGGCCG >> 3495684
3985512 << *G*G*G*CT**A*****-**G*G****AG***G**** << 3985477
Statistics
Matches: 81 (72.32%), Mismatches: 25 (22.32%), Indels: 6 (5.36%)
ATpairs: 17.28%, CGpairs: 82.72%, GTpairs: 0.00%
:i = 3985579
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 7481137
highcenter: 7481185
testcenter: 7481161
im3: 27.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4014034 center: 7743559 interval size: 300 g: 3
Alignment explanation
Indices: 3729462--3729806,4013747--4014097 Loop: 283940 Score: 112
Left Length: 345 Right Length: 351 Average length: 348.0
3 most common centers (desc): 7743559 7743553 7743562
3729452 >> (LF) GCTGGGTGCG
4014107 << (RF) CGGACTACCG
3729462 >> CACCGGTGACATCGGCCGGGTGGACGATCGCGGCTTCGTGTTCGTCGA-GGACCGGCTCAAGGACATGATCATCA >> 3729535
4014097 << ******G***G******TA**G****GCCG***TGCCA**********G****CG*TCC*G*-********C**A << 4014024
3729536 >> CCGGCGGCGAGAACGTCTACGGACCCGAGGTCGAGCGCGTGCTGCTCGCCCATCCCGCGGTCGCCGACGCC-GCG >> 3729609
4014023 << ****A**A**********A*GGGCC**********CT*G*****CG***************C*****C***T*** << 4013949
3729610 >> GTCGTCGGCGTGCCCGACGACCACTGGGGCGAGTCGGTCCACGCGGTGGTGGTGGCGG-GCGAGCCGGTCGAGGC >> 3729683
4013948 << G-*A*******GCT*******C*C*TG***G**-***-*AC**-*****GG****A*GA****-****C*G*G** << 4013879
3729684 >> GG-CG--GACGT-CA--T-CGCG-C-AC-TGCCGCTCGCACCTGGCGGGCTACAAA-TGCCCGAAGACCGTCGAA >> 3729747
4013878 << *GA*TGG*G**TC**CC*C****T*G**C***-**T*G********GG*******CC*****GCG***-**CGAG << 4013806
3729748 >> TTCGTCGCCG-AGCTGCCCAGGAACGCCAGCGGCAAGATCCTGAAACGTACCCTGCGCGA >> 3729806
4013805 << ***G*-****C*T*****CG*G***G*C*****C***C****GCAG**GCA********* << 4013747
Statistics
Matches: 248 (68.89%), Mismatches: 88 (24.44%), Indels: 24 (6.67%)
ATpairs: 28.23%, CGpairs: 71.77%, GTpairs: 0.00%
:i = 4014034
tupleindex: 3
intervalindex: 1
matches_in_interval: 101.0000
lowcenter: 7743535
highcenter: 7743583
testcenter: 7743559
im3: 56.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4035386 center: 7671531 interval size: 300 g: 3
Alignment explanation
Indices: 3635964--3636328,4035203--4035567 Loop: 398874 Score: 196
Left Length: 365 Right Length: 365 Average length: 365.0
3 most common centers (desc): 7671531 7671532 7671530
3635954 >> (LF) CGCCCTGGTG
4035577 << (RF) GCCAAAGGCG
3635964 >> GGTCCGCAGACCGGCATCGTGGTGCTCGGCTACGGCCTGCTGCCGGACGGCTCGCTCCGGCCCGAGCTGGTCAAC >> 3636038
4035567 << **G***C*G****G*********************T********G******C*GT*C**G*****T**G***C*T << 4035493
3636039 >> CGGCTCACCGCCGCCTGGATCCAAGCGATCGCCTCCCCCTTCTCCCCCG-TCGTCGTGACGGGCGGGAATCCGCA >> 3636112
4035492 << **G**CGC*****CT*TACG***C***G*-**ACC****CC*CA*T***T**T*******G**C**G**G**G*C << 4035419
3636113 >> GAACGGCATCACCGAGGCCGAGGCGATGCGCAACTGGCTGGTCGGGCGCGGCCTGCCCGCCG-CCCGCATCCACG >> 3636186
4035418 << A*******G***********G***G***CG*C*******G****GG******T*-*******C*****C*****G << 4035345
3636187 >> TCGAGAACCGCGCCGGGTCGACCGTGC-AGAACGCGCTGTTCAGCACCCG-GC-TGCTGCGT-GACATCGGCGCG >> 3636257
4035344 << C***GC********TGGT*G***G-**C*******GCT**T*-**-*C**G**T*G**-**GG*G*G*******G << 4035274
3636258 >> AGCAGCGCCGTCGTGGTCACCTC-GCCGAATCACATCCGCCGTGCGGTCGCCGATTTCATCGTGGCGGGCAT >> 3636328
4035273 << G**CT******************G*C***G-***C*C*G***C*********GAG***GC**GG******** << 4035203
Statistics
Matches: 268 (72.04%), Mismatches: 90 (24.19%), Indels: 14 (3.76%)
ATpairs: 23.88%, CGpairs: 76.12%, GTpairs: 0.00%
:i = 4035386
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 7671507
highcenter: 7671555
testcenter: 7671531
im3: 71.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4123353 center: 8246666 interval size: 40 g: 1
Alignment explanation
Indices: 4123312--4123332,4123334--4123354 Loop: 1 Score: 42
Left Length: 21 Right Length: 21 Average length: 21.0
3 most common centers (desc): 8246666 0 0
4123302 >> (LF) GGCACGCGGA
4123364 << (RF) TTCTGTGTGA
4123312 >> CACGGCGAAGGCCGAACCTGA >> 4123332
4123354 << ********************* << 4123334
Statistics
Matches: 21 (100.00%), Mismatches: 0 (0.00%), Indels: 0 (0.00%)
ATpairs: 33.33%, CGpairs: 66.67%, GTpairs: 0.00%
:i = 4123353
tupleindex: 1
intervalindex: 2
matches_in_interval: 28.0000
lowcenter: 8246658
highcenter: 8246674
testcenter: 8246666
im3: 20.0000
frequent_center_ratio*rnkp: 7.6500
Found at i: 4225628 center: 8143094 interval size: 300 g: 3
Alignment explanation
Indices: 3917423--3917596,4225490--4225675 Loop: 307893 Score: 189
Left Length: 174 Right Length: 186 Average length: 180.0
3 most common centers (desc): 8143094 8143089 8143090
3917413 >> (LF) GCGCCCGTCC
4225685 << (RF) GGCCGGCGAC
3917423 >> ACCCG-CTCAGT--CGGTATC-GACCTGCGCCTGAGC-GGGACGGCCTCCGTGGTCACGCTCCGCTGCCAACTCC >> 3917492
4225675 << *****C*****TCC****C**G***C***A*-*****G***C*************C*************CC**** << 4225602
3917493 >> GGCCGCTGACCCG-CTCAGT--CGGTGTCC-ACCTGCGCCTGAGC-GGGACGGCCTCCGTGG-TCACGCTCCGCT >> 3917561
4225601 << *************C*****TCC********C*AC***-*******G***C************C*C********** << 4225528
3917562 >> GCCGACTCCGGCCGCTGACCCG-CTCAGT--CGGTGTC >> 3917596
4225527 << ****C*****************C*****TCC******* << 4225490
Statistics
Matches: 157 (83.51%), Mismatches: 15 (7.98%), Indels: 16 (8.51%)
ATpairs: 24.84%, CGpairs: 75.16%, GTpairs: 0.00%
:i = 4225628
tupleindex: 3
intervalindex: 1
matches_in_interval: 120.0000
lowcenter: 8143070
highcenter: 8143118
testcenter: 8143094
im3: 37.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4233791 center: 8459217 interval size: 300 g: 3
Alignment explanation
Indices: 4225417--4225618,4233609--4233799 Loop: 7990 Score: 208
Left Length: 202 Right Length: 191 Average length: 196.5
3 most common centers (desc): 8459217 8459222 8459227
4225407 >> (LF) TCGGCCGCTT
4233809 << (RF) GTCTGTGGCG
4225417 >> CTGAGCCGGGTCAGCGGCGGGAGGCGGCAGCGGAGCGTCACCCACGGAGGCCGCCCCGGCTCAGGGCACA-TCGG >> 4225490
4233799 << ******-*A*********G********A****G*********-***************-******-**C*T**T* << 4233729
4225491 >> ACACCGCCTCTGAGCCGGGTCAGCGGCCGGAGCCGGCAGCGGAGCGTCACCCACGGAGGCCGCCCCGGCTCAGGG >> 4225565
4233728 << *********--****-**********C*****CA**A****G*********-*A*************-******- << 4233660
4225566 >> CACA-TCGGACACCGCCTCTGAGCCGGGTCAGCGGCCGGAGCCGGCAGCGGAGC >> 4225618
4233659 << **C*T**T**********--****-*A**************CA**A****G*** << 4233609
Statistics
Matches: 170 (83.33%), Mismatches: 19 (9.31%), Indels: 15 (7.35%)
ATpairs: 25.29%, CGpairs: 74.71%, GTpairs: 0.00%
:i = 4233791
tupleindex: 3
intervalindex: 1
matches_in_interval: 139.0000
lowcenter: 8459193
highcenter: 8459241
testcenter: 8459217
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4360819 center: 8337488 interval size: 300 g: 3
Alignment explanation
Indices: 3976651--3976740,4360748--4360837 Loop: 384007 Score: 65
Left Length: 90 Right Length: 90 Average length: 90.0
3 most common centers (desc): 8337488 0 0
3976641 >> (LF) CAAGGCTGCC
4360847 << (RF) CTGGTGGTGC
3976651 >> GCCAAGAAGGCCCCGGCCAAGAAGGCCGCAGCGAAGAAGGCACCCGCCAAGAAGGCCGCGGCCAAGAAGGCGCCT >> 3976725
4360837 << ****GG***T**C*G***********TG*G*********T*CT*C****GG*****AA****C*GG******A*C << 4360763
3976726 >> GCGAAGAAGGCCACC >> 3976740
4360762 << ****GG********* << 4360748
Statistics
Matches: 67 (74.44%), Mismatches: 23 (25.56%), Indels: 0 (0.00%)
ATpairs: 31.34%, CGpairs: 68.66%, GTpairs: 0.00%
:i = 4360819
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 8337464
highcenter: 8337512
testcenter: 8337488
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4360946 center: 8337596 interval size: 300 g: 3
Alignment explanation
Indices: 3976641--3976731,4360862--4360955 Loop: 384130 Score: 72
Left Length: 91 Right Length: 94 Average length: 92.5
3 most common centers (desc): 8337593 8337596 8337594
3976631 >> (LF) GGCCGGTCCG
4360965 << (RF) GGTTCTTCTG
3976641 >> CAAGGCTGCCGCCAAGAAGGCCCCGGCCAAGAAGGCCGC-A-G-CGAAGAAGGCACCCGCCAAGAAGGCCGCGGC >> 3976712
4360955 << **G***G************T**C*G*********T**T*G*G*C*G*GG*****G************T*CT**** << 4360881
3976713 >> CAAGAAGGCGCCTGCGAAG >> 3976731
4360880 << C*GG*****G**C****** << 4360862
Statistics
Matches: 72 (76.60%), Mismatches: 19 (20.21%), Indels: 3 (3.19%)
ATpairs: 30.56%, CGpairs: 69.44%, GTpairs: 0.00%
:i = 4360946
tupleindex: 3
intervalindex: 1
matches_in_interval: 121.0000
lowcenter: 8337572
highcenter: 8337620
testcenter: 8337596
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4406113 center: 8797863 interval size: 300 g: 3
Alignment explanation
Indices: 4391265--4391983,4405879--4406601 Loop: 13895 Score: 327
Left Length: 719 Right Length: 723 Average length: 721.0
3 most common centers (desc): 8797863 8797866 8797862
4391255 >> (LF) GCGTCGCGCC
4406611 << (RF) CGACTAGGCC
4391265 >> CGGTCAGGACGGGCAGCTGCCACCCGCG-AGTTCGTCGAGATGGTCGGTGATCAGCGCGGCCATGGCGTTCAGCG >> 4391338
4406601 << *******AC**G****AC***C**-***G****CT**G**C**GGC**GG*C*************A***GC***T << 4406528
4391339 >> CGGTCA-TCCCGTCGCTGAAGGCGCCCGATTCGGGCTGGGCGGCCAGCGCCACCGCGATCCGCCCGCCGGGGCCG >> 4391412
4406528 << -***CCC*CC*****C*****A****C*****G*G******G****A**T*********CT*A***AA*G*GC** << 4406454
4391413 >> TCGATGATGCCGAACTGCCGGACCAGGTAGTCGCCCGAG--GT-GTCCGGCCCCCAGCCACCCTTGAAC-TCGGC >> 4391483
4406453 << CC**GG*CG********C********T**GT****C*AGAG**G******T*****************CT***-* << 4406380
4391484 >> GCCGCCGACCGTGCCGAGGCCCCAGCGGTGGCTGGGCACGATCTGGGCCATCAGGTTCAGCACGGTGTCCGCCC- >> 4391559
4406379 << ***GA***AC*****G**G*****T*GG***AG***CCA****G*TG****C**G*CCCAC****G***C***AC << 4406305
4391558 >> CGGACAGGCACGGCAGCCGGGAGGCGAAGCGCACCTGCTCGGCCAGCGACCACTCGGCC-TGCCCGAAGGCGGAA >> 4391631
4406304 << ***-************************G********T****AC***********G*A*C****-***G**GAGC << 4406232
4391632 >> TGCTCG-GCCC-GTACCCGGGTGGGTGGCACCGCGGTGGTGCTGTCGCCCGCTTCC-CGCAGCACCGCCTCCACC >> 4391703
4406231 << *TC***T***CT**C*C****GG**CGT****-**-*G***CG***T*****G**CA**-**C***AC**C***C << 4406160
4391704 >> GCCTCGGCCGCCTGCTTGCCAC-CGCCGAGGCCCTGCCACAGGGTGTCGGCGGCGGCGTTGTCGGACGCGGTGAC >> 4391777
4406159 << ************-**GT***GCA****G**TCTT*G******G*G*********TA**********CT******A << 4406086
4391778 >> CGCCGCCGACATCGCATAGGTGGACGCGCC--CGCG-TCGGCGCGTTCGGCCGCGATCACCAACGGGATCTTCAT >> 4391849
4406085 << ***C***A-*CC**--*G**GGTA******AA**C*T***GC***GTCG*****G*GCC***C***G*G***C** << 4406014
4391850 >> CGTCGACCAGGCCGGGCCGCTGGTCCAGTCGCCGAAGGTCACCATCCGTTCGCCGCCGACCGGCATGACGGCCAG >> 4391924
4406013 << *************T*****C*G*******AT*****GTG*CA*C****C*A******G**********AG***** << 4405939
4391925 >> TCCCGCGCGCCCGCGCAGTC-CGGCCTTCCACTGCTGGAAGTCCGCGGCCAGCGTG-CCGG >> 4391983
4405938 << T***T*GA**********G*C****-*C*CAA**CCA***G**CT*********G*A**** << 4405879
Statistics
Matches: 519 (70.52%), Mismatches: 187 (25.41%), Indels: 30 (4.08%)
ATpairs: 25.43%, CGpairs: 74.57%, GTpairs: 0.00%
:i = 4406113
tupleindex: 3
intervalindex: 1
matches_in_interval: 106.0000
lowcenter: 8797839
highcenter: 8797887
testcenter: 8797863
im3: 68.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4472099 center: 8513360 interval size: 300 g: 3
Alignment explanation
Indices: 4041247--4041928,4471441--4472113 Loop: 429512 Score: 129
Left Length: 682 Right Length: 673 Average length: 677.5
3 most common centers (desc): 8513360 8513369 8513361
4041237 >> (LF) GTGCTGGCCC
4472123 << (RF) GTCAACGCCT
4041247 >> TGATGTTCACCGCCTGCCACCCGGTGCTGTCCCAG-GAAGCGCGGGTGGCGCTGACGCTGCGAGTGATCGGCGGC >> 4041320
4472113 << ****G******AC***********G******C-**G***A*G*T******G**G**G*****GG**C**A****C << 4472040
4041321 >> CTGGGCAGCGA-CGAGATCGCGCG-GCTGTTCCTGGTGCCGACGGCCACCGTG-CAGG-CGCGCATCACCCGGGC >> 4041391
4472039 << ***G***-***C************G**G-******GTTA**CTTGT*******C*GGTT**-**-**A******* << 4471969
4041392 >> GAAGAAGACCCTC-GCCGCCGCGCGGGTGCCGTTCGAG-GTGCCGCCGGCGGCCGAGC-GCCCGGCCCGGCTGAT >> 4041463
4471968 << G***CG**TCT**G****CCG***GT-*G*****-*G*G*********G*TGT*GA**A*****TC*-*****GG << 4471897
4041464 >> CTCGGTGCTCAAGGTGA-TCTACGTGATCTTCACCGAGGGCTCCAGCGCGGGCAGTGGTCCCGAGCTGATCCGCT >> 4041537
4471896 << *CCG*****CCGG-**GC*****G**C***************T*AGC**GTG*C*G**G**C*G*CG*C*C**CC << 4471823
4041538 >> TCGACCTG-GCGGATGAGGCCCAGCGCCTGGCCCGGGTGTTGACCCGCCTGATGCCCGACGAGCCGGAGGCACAC >> 4041611
4471822 << GC**C**GA***-*G*****CTAG**C****C*T**G*****AC*CG****G******G*********T**G*C* << 4471749
4041612 >> GGCCTGGTCGC-C-C-TGCT-C-GAACTCACCGC-GTCCCGGTTCCCCGCCCGCACCGGCCCCGACGGCGAGCCG >> 4041680
4471748 << *G****G****C*A*T****C*A*G**C-**T**T*T*C***C-*TC****-***--*-***C*******G*C*G << 4471680
4041681 >> GTCCTGCTCGAGCAGCAGGACCGGCGCCGCTGGGACCGTTCGGCGATCCGGCGCGGTCGCGCCGCC-CTGGCCCG >> 4041754
4471679 << **C*G***C***C*T********GC*CC*****T****GC****G***-*G**T**C*GC*C***AC******CT << 4471606
4041755 >> CGCCGGTGCGCTCGGGCGCGGCCTCGGCATCTACGGCCTGCAGGCCGC-CATCGCCGAATGTCACGCCGTCGCCG >> 4041828
4471605 << *GA**GG*T-*C**G***-****-*A--****-**-*--******-**C********GGCGC*****CTC****G << 4471541
4041829 >> CCT-C-GGTCGAGGAGACGAACTGGGAGCGGATCGTGGTGCTGTACGAGGCGCTGGGGAGGTTGGCGCCCTCCCC >> 4041901
4471540 << *CCT*A****G*G**G-***-*****G****C*C****G*CCG*****G*TT***GA*G***TGA*GC*C***** << 4471468
4041902 >> GATCGT-CGAACTCAACCGCGCGGTCGC >> 4041928
4471467 << *C*C**C**C-***************** << 4471441
Statistics
Matches: 468 (66.57%), Mismatches: 184 (26.17%), Indels: 51 (7.25%)
ATpairs: 23.72%, CGpairs: 76.28%, GTpairs: 0.00%
:i = 4472099
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 8513336
highcenter: 8513384
testcenter: 8513360
im3: 60.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4520052 center: 8753878 interval size: 300 g: 3
Alignment explanation
Indices: 4233705--4233890,4519989--4520176 Loop: 286098 Score: 230
Left Length: 186 Right Length: 188 Average length: 187.0
3 most common centers (desc): 8753880 8753878 8753881
4233695 >> (LF) ACCACCTCCG
4520186 << (RF) GATCTAAGTA
4233705 >> CCCGCTGACCCGCTCAGGCGGTGTCTGATTCTGCCTGAGCGGGGCGGCCTCCGTGG-TGACGCTGCGCTACCGCC >> 4233778
4520176 << *****C****C**T*G***A***G***AGTCG*****A************C**C**C****************** << 4520102
4233779 >> TCCGGCCGCTGACACGCTCAGGCGGTGTCTGATTCTGCCTGAGCGGGG--CGGCCTCCGTGGTGACGCTGCGCTA >> 4233851
4520101 << *************G*********A****CC****CG*****A******CC******C****************** << 4520027
4233852 >> CCGCCTCCGGCCGCTGACACGCTCAGGCGGCGCGCGGCG >> 4233890
4520026 << ******************G**********A**-****** << 4519989
Statistics
Matches: 161 (85.19%), Mismatches: 24 (12.70%), Indels: 4 (2.12%)
ATpairs: 20.50%, CGpairs: 79.50%, GTpairs: 0.00%
:i = 4520052
tupleindex: 3
intervalindex: 1
matches_in_interval: 99.0000
lowcenter: 8753854
highcenter: 8753902
testcenter: 8753878
im3: 53.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4555968 center: 8782810 interval size: 300 g: 3
Alignment explanation
Indices: 4226813--4226975,4555835--4556000 Loop: 328859 Score: 72
Left Length: 163 Right Length: 166 Average length: 164.5
3 most common centers (desc): 8782810 8782813 8782809
4226803 >> (LF) CGCGATGGCC
4556010 << (RF) GTACTCCCAC
4226813 >> GCGCCCGCG-C-CCT-GCAGCGCGCGCGCCGCGATGAGCATCGCTTGCCAGTGGGCG-AGGCCGC-ACAGCAGCG >> 4226882
4556000 << *****A***T*T***A*C***T*******C************A*CC**C**TGG**GG*******C**G**-*-* << 4555928
4226883 >> AGGCGACCGTGAACAGCCCGACGCCGGCGATGAGCATGC-GTTTGCGGCCGA--ACGCG-TCGCCGAGA-CGCCC >> 4226952
4555927 << ****G*CCGG***--***-***GC**G*********-**T*********C*GGC*A***C********CA***** << 4555857
4226953 >> GCCGAGCAGCATCAGCCCGGCGA >> 4226975
4555856 << TA*-*G**G**C***C******* << 4555835
Statistics
Matches: 125 (72.25%), Mismatches: 31 (17.92%), Indels: 17 (9.83%)
ATpairs: 24.00%, CGpairs: 76.00%, GTpairs: 0.00%
:i = 4555968
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 8782786
highcenter: 8782834
testcenter: 8782810
im3: 34.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4663502 center: 8962439 interval size: 300 g: 3
Alignment explanation
Indices: 4298919--4299092,4663348--4663519 Loop: 364255 Score: 57
Left Length: 174 Right Length: 172 Average length: 173.0
3 most common centers (desc): 8962439 8962438 8962440
4298909 >> (LF) TCCGCGCTGC
4663529 << (RF) CGCCCAGCGC
4298919 >> CGTCGACGCCGGAGCGCAGCACCACGAACGCCTCG-AGCACCTCGCCGCGCAGTTCGTCGGGCAGGCCGACCACG >> 4298992
4663519 << **G***-*****C**GCC*************C-**G***GC**A****TT*AGCGC****AGC*G******C**G << 4663447
4298993 >> GCGGCCTCGGCGACGTCGTCGTGCATCACCAGCACGCTCTCGACCTCGAACGGGCCGATGCGGTACCCGGCCATG >> 4299067
4663446 << *****A***TT*********GG*CGG*C*C*AC*C*A****G*******C****TT**G*AAG*GC***G*CCT* << 4663372
4299068 >> ATGATGACGTCGTCGTCGCGGGCCG >> 4299092
4663371 << *G***G*A*************-*** << 4663348
Statistics
Matches: 118 (67.43%), Mismatches: 53 (30.29%), Indels: 4 (2.29%)
ATpairs: 26.27%, CGpairs: 73.73%, GTpairs: 0.00%
:i = 4663502
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 8962415
highcenter: 8962463
testcenter: 8962439
im3: 42.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4666323 center: 8978214 interval size: 300 g: 3
Alignment explanation
Indices: 4311888--4311939,4666275--4666326 Loop: 354335 Score: 47
Left Length: 52 Right Length: 52 Average length: 52.0
3 most common centers (desc): 8978214 8978215 0
4311878 >> (LF) CGCCGCCACC
4666336 << (RF) CGCCACGGCC
4311888 >> AGGCCGACCATCAGGGT-GCCGACCAGGCCGCCGACCAGGTGCACGCCGACCA >> 4311939
4666326 << **********CC-*G**G*T********TT*****C****GA*********** << 4666275
Statistics
Matches: 42 (79.25%), Mismatches: 9 (16.98%), Indels: 2 (3.77%)
ATpairs: 26.19%, CGpairs: 73.81%, GTpairs: 0.00%
:i = 4666323
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 8978190
highcenter: 8978238
testcenter: 8978214
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4699375 center: 8933013 interval size: 300 g: 3
Alignment explanation
Indices: 4233609--4233731,4699284--4699402 Loop: 465552 Score: 127
Left Length: 123 Right Length: 119 Average length: 121.0
3 most common centers (desc): 8933014 8933013 8933011
4233599 >> (LF) CGGGCGGCCA
4699412 << (RF) GGCACCACTG
4233609 >> GCTGCGCTACCACCTCCGGCCGCTGACACGCTCAGGCGGTGTCTGATTC-T-GCCTGAGCGGGGCGGCCTCCATG >> 4233681
4699402 << ***********C***********T-**-*********A*****-*-***C*G***********-******C*C** << 4699333
4233682 >> GTGACGCTGCGCTACCACCTCCGCCCGCTGACCCGCTCAGGCG-GTGTCTG >> 4233731
4699332 << *************C**C******C****--*A********A**T****C** << 4699284
Statistics
Matches: 105 (83.33%), Mismatches: 11 (8.73%), Indels: 10 (7.94%)
ATpairs: 25.71%, CGpairs: 74.29%, GTpairs: 0.00%
:i = 4699375
tupleindex: 3
intervalindex: 1
matches_in_interval: 113.0000
lowcenter: 8932989
highcenter: 8933037
testcenter: 8933013
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4699419 center: 8933167 interval size: 300 g: 3
Alignment explanation
Indices: 4233683--4233880,4699292--4699481 Loop: 465411 Score: 232
Left Length: 198 Right Length: 190 Average length: 194.0
3 most common centers (desc): 8933167 8933170 8933169
4233673 >> (LF) GCCTCCATGG
4699491 << (RF) CTGGACGCCG
4233683 >> TGACGCTGCGCTACCACCTCCGCCCGCTGACCCGCTCAGGCGGTGTCTGATTC-T-GCCTGAGCGGGGCGGCCTC >> 4233755
4699481 << ************C**C******C****T-***-********A*****-*-***C*G***********-******* << 4699412
4233756 >> CGTGGTGACGCTGCGCTACCGCCTCCGGCCGCTGACACGCTCAGGCGGTGTCTGATTC-T-GCCTGAGCGGGGCG >> 4233828
4699411 << ********************************T-**-*********A*****-*-***C*G***********-** << 4699342
4233829 >> GCCTCCGTGGTGACGCTGCGCTACCGCCTCCGGCCGCTGACACGCTCAGGCG >> 4233880
4699341 << ****C*****************C**************TA-*-*******A** << 4699292
Statistics
Matches: 174 (86.14%), Mismatches: 12 (5.94%), Indels: 16 (7.92%)
ATpairs: 24.14%, CGpairs: 75.86%, GTpairs: 0.00%
:i = 4699419
tupleindex: 3
intervalindex: 1
matches_in_interval: 135.0000
lowcenter: 8933143
highcenter: 8933191
testcenter: 8933167
im3: 40.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4747767 center: 9492141 interval size: 300 g: 3
Alignment explanation
Indices: 4744245--4744584,4747557--4747893 Loop: 2972 Score: 202
Left Length: 340 Right Length: 337 Average length: 338.5
3 most common centers (desc): 9492141 9492138 9492140
4744235 >> (LF) GCGTACTCGT
4747903 << (RF) CACTCCACCC
4744245 >> TGCCGAGGGTGGCGATGACCAGCAGGCCG-ATCAGCTGGATGACCGGCACGCCGATGTTGCCGCCGCCGGCGTTC >> 4744318
4747893 << ***********---**G*C****-***T*G*G*******C*GAC**GC*******CT*****A***C*******C << 4747823
4744319 >> AGCCCGAGCGCCCAGCCCTTGA-GCCGCTGCGGGTAGAAGG-CGTTGATGTTGGTCATCGACGAGGCGAAGTTGC >> 4744391
4747822 << *AA*********CG******GAA***-**GC***T*****TT**T-********G***********T******** << 4747750
4744392 >> CGCCACCGACACCGGCGAAGGCCGCCACCACCAGGAAGGTGGTGTACGAGGTGCCGGGCTGGTTGATGAAGTACA >> 4744466
4747749 << ****C****TA**G**G*CG*******C*****A***GTGGGTGTA**C******G**********G***G--** << 4747677
4744467 >> GCGTCAG-C--AGCGTGGGCACCAGCAGCAGCAAGGCCGAGAAGACGGTCCAGTTGCGGCCACCGAAGCGGGCGG >> 4744538
4747676 << *-*G***C*GG**C**G**A**********A*CGG**CGA***GC****CT**CG******C*****G**A*C*T << 4747603
4744539 >> TGGCGACGGTGTAGGGAATGCGCAGCACCGCACCGACCAGGGTCGG >> 4744584
4747602 << ******T******************CC****C********G***** << 4747557
Statistics
Matches: 254 (73.41%), Mismatches: 77 (22.25%), Indels: 15 (4.34%)
ATpairs: 30.31%, CGpairs: 69.69%, GTpairs: 0.00%
:i = 4747767
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 9492117
highcenter: 9492165
testcenter: 9492141
im3: 74.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4748117 center: 9492171 interval size: 300 g: 3
Alignment explanation
Indices: 4744039--4744103,4748068--4748132 Loop: 3964 Score: 90
Left Length: 65 Right Length: 65 Average length: 65.0
3 most common centers (desc): 9492171 0 0
4744029 >> (LF) GGATCTGGCC
4748142 << (RF) AGTCGCAGCC
4744039 >> GAAGGCGAAGCTGTAGCCGATGAACGATCCGAACGTGCCGATGTAGAGGAACGCGATCGCCCAGG >> 4744103
4748132 << **********CT*T*************C*****C*******************TG***T****** << 4748068
Statistics
Matches: 57 (87.69%), Mismatches: 8 (12.31%), Indels: 0 (0.00%)
ATpairs: 40.35%, CGpairs: 59.65%, GTpairs: 0.00%
:i = 4748117
tupleindex: 3
intervalindex: 1
matches_in_interval: 100.0000
lowcenter: 9492147
highcenter: 9492195
testcenter: 9492171
im3: 48.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4793504 center: 9290807 interval size: 300 g: 3
Alignment explanation
Indices: 4497281--4497335,4793472--4793526 Loop: 296136 Score: 65
Left Length: 55 Right Length: 55 Average length: 55.0
3 most common centers (desc): 9290807 0 0
4497271 >> (LF) CGGTGGAAGT
4793536 << (RF) TAGGTGCCGT
4497281 >> TCGACCGCGCCGCGCTCGACGAGTTCGCCGCCCGCTCGCACCGGCTGGCCGCCGC >> 4497335
4793526 << ***C********TT*TC**************C**********TA*C********* << 4793472
Statistics
Matches: 46 (83.64%), Mismatches: 9 (16.36%), Indels: 0 (0.00%)
ATpairs: 15.22%, CGpairs: 84.78%, GTpairs: 0.00%
:i = 4793504
tupleindex: 3
intervalindex: 1
matches_in_interval: 119.0000
lowcenter: 9290783
highcenter: 9290831
testcenter: 9290807
im3: 28.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4850521 center: 9252849 interval size: 300 g: 3
Alignment explanation
Indices: 4402326--4402387,4850462--4850523 Loop: 448074 Score: 49
Left Length: 62 Right Length: 62 Average length: 62.0
3 most common centers (desc): 9252849 0 0
4402316 >> (LF) GGCGCTGCTG
4850533 << (RF) GCCGTAGTAG
4402326 >> AACACGCTGATGCTCTCGGTCCTGGAACGCCGCCGCGAACTGGGGGTGCTGCGGGCGATGGG >> 4402387
4850523 << *********CG***C*****CC*G**C**C********CT*G**GT*******G***C**** << 4850462
Statistics
Matches: 47 (75.81%), Mismatches: 15 (24.19%), Indels: 0 (0.00%)
ATpairs: 29.79%, CGpairs: 70.21%, GTpairs: 0.00%
:i = 4850521
tupleindex: 3
intervalindex: 1
matches_in_interval: 117.0000
lowcenter: 9252825
highcenter: 9252873
testcenter: 9252849
im3: 40.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4851790 center: 9254211 interval size: 300 g: 3
Alignment explanation
Indices: 4402359--4402463,4851748--4851852 Loop: 449284 Score: 59
Left Length: 105 Right Length: 105 Average length: 105.0
3 most common centers (desc): 9254211 9254212 9254210
4402349 >> (LF) GGAACGCCGC
4851862 << (RF) GGTCGCCGAC
4402359 >> CGCGAACTGGGGGTGCTGCGGGCGATGGGGACCAGCCGCAGGTTCCTGCTGCGG-TCGGTGCTGGCCGAGGCGGC >> 4402432
4851852 << **C**C****G*A*******G***C****GC*C*T*T*TG**GTCC**C-****G******C***********-* << 4851780
4402433 >> CGGC-ATCGGCGTGGTCGGC-GCGGCGATCGGC >> 4402463
4851779 << A**AC*********T*****T***A-******* << 4851748
Statistics
Matches: 79 (73.15%), Mismatches: 23 (21.30%), Indels: 6 (5.56%)
ATpairs: 21.52%, CGpairs: 78.48%, GTpairs: 0.00%
:i = 4851790
tupleindex: 3
intervalindex: 1
matches_in_interval: 107.0000
lowcenter: 9254187
highcenter: 9254235
testcenter: 9254211
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4855145 center: 9709636 interval size: 80 g: 2
Alignment explanation
Indices: 4854485--4854540,4855098--4855151 Loop: 557 Score: 53
Left Length: 56 Right Length: 54 Average length: 55.0
3 most common centers (desc): 9709636 9709638 9709637
4854475 >> (LF) CCGCGAGCAG
4855161 << (RF) TGCGGGTGCA
4854485 >> CACCTGCGGCCACGACCTGCTGCCCGGCGCACTGCGGGCCCGCGCCTCGGCGAGCG >> 4854540
4855151 << *****A*************A***C**G***GC***AG***-**-*********G** << 4855098
Statistics
Matches: 45 (80.36%), Mismatches: 9 (16.07%), Indels: 2 (3.57%)
ATpairs: 20.00%, CGpairs: 80.00%, GTpairs: 0.00%
:i = 4855145
tupleindex: 2
intervalindex: 1
matches_in_interval: 37.0000
lowcenter: 9709624
highcenter: 9709648
testcenter: 9709636
im3: 13.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 4861541 center: 9359522 interval size: 300 g: 3
Alignment explanation
Indices: 4497981--4498040,4861482--4861541 Loop: 363441 Score: 43
Left Length: 60 Right Length: 60 Average length: 60.0
3 most common centers (desc): 9359522 9359521 0
4497971 >> (LF) ATCGGCGCTG
4861551 << (RF) TTGGCGGCAG
4497981 >> GTCACCGGCGGGTCGCGGGGCATCGGCGCCGAG-ATCGCCGCCCGGCTGGCCGCCGACGGC >> 4498040
4861541 << **********GGC*G*T***C********C*GGA**-******CG***G********C*** << 4861482
Statistics
Matches: 46 (75.41%), Mismatches: 13 (21.31%), Indels: 2 (3.28%)
ATpairs: 17.39%, CGpairs: 82.61%, GTpairs: 0.00%
:i = 4861541
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 9359498
highcenter: 9359546
testcenter: 9359522
im3: 26.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4862625 center: 9632848 interval size: 300 g: 3
Alignment explanation
Indices: 4770219--4770324,4862524--4862629 Loop: 92199 Score: 72
Left Length: 106 Right Length: 106 Average length: 106.0
3 most common centers (desc): 9632848 0 0
4770209 >> (LF) GAGAGCCGCC
4862639 << (RF) GCCGCGCTCC
4770219 >> CGCTCGGCGTGGTCGGCGTGATCGGTCCGTGGAACTACCCGGTCTACACCCCGAACGGTTCCATCGGCTACGCGC >> 4770293
4862629 << **C*************C*G****TGC**********A****GT*G*C*A*T*GAA**GGTTCG*C***GGC**** << 4862555
4770294 >> TGGCCGCGGGCAACACCGTGGTGTTCAAGCC >> 4770324
4862554 << ***********************G****T** << 4862524
Statistics
Matches: 78 (73.58%), Mismatches: 28 (26.42%), Indels: 0 (0.00%)
ATpairs: 26.92%, CGpairs: 73.08%, GTpairs: 0.00%
:i = 4862625
tupleindex: 3
intervalindex: 1
matches_in_interval: 97.0000
lowcenter: 9632824
highcenter: 9632872
testcenter: 9632848
im3: 49.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4873745 center: 9573053 interval size: 300 g: 3
Alignment explanation
Indices: 4699292--4699416,4873634--4873763 Loop: 174217 Score: 158
Left Length: 125 Right Length: 130 Average length: 127.5
3 most common centers (desc): 9573053 9573050 9573052
4699282 >> (LF) ACCACACACT
4873773 << (RF) GGCGGCTTTG
4699292 >> CGACTGAGCGGAT--GCGGCCGGAGGCGGCAGCGCAGCGTCACCACGCAGGCCGCCC-GCTCAGGCGACGAACGA >> 4699363
4873763 << **G********C*GT**********T***A***************************G****C****-*T*A**C << 4873690
4699365 >> -CACAGCCTGAGCGGTT--GCGGCCGGAGGCGGTAGCGCAGCGTCACCACGGAGGC >> 4699416
4873689 << C***G**********C*GT********************************G**** << 4873634
Statistics
Matches: 113 (86.26%), Mismatches: 11 (8.40%), Indels: 7 (5.34%)
ATpairs: 21.24%, CGpairs: 78.76%, GTpairs: 0.00%
:i = 4873745
tupleindex: 3
intervalindex: 1
matches_in_interval: 108.0000
lowcenter: 9573029
highcenter: 9573077
testcenter: 9573053
im3: 34.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4873746 center: 9573128 interval size: 300 g: 3
Alignment explanation
Indices: 4699361--4699489,4873635--4873769 Loop: 174145 Score: 151
Left Length: 129 Right Length: 135 Average length: 132.0
3 most common centers (desc): 9573128 9573125 9573127
4699351 >> (LF) AGGCGACGAA
4873779 << (RF) GCTAGCGGCG
4699361 >> CGACACAGCCTGAGCGGTT--GCGGCCGGAGGCGGTAGCGCAGCGTCACCACGGAGGCCGCCC-GCTCAGGCGAC >> 4699432
4873769 << ***T**G**********C*GT**********T*********************G*********G****C****-* << 4873696
4699433 >> GAACGA-CACAGCCTGAGCGGTT--GCGGCCGGAGGCGGCAGCGCAGCGTCAGC-CGCAGG >> 4699489
4873695 << T*A**CC***G**********C*GT**************A************G*T****** << 4873635
Statistics
Matches: 115 (84.56%), Mismatches: 13 (9.56%), Indels: 8 (5.88%)
ATpairs: 21.74%, CGpairs: 78.26%, GTpairs: 0.00%
:i = 4873746
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 9573104
highcenter: 9573152
testcenter: 9573128
im3: 45.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4873758 center: 9393761 interval size: 300 g: 3
Alignment explanation
Indices: 4519989--4520130,4873634--4873775 Loop: 353503 Score: 208
Left Length: 142 Right Length: 142 Average length: 142.0
3 most common centers (desc): 9393763 9393761 9393764
4519979 >> (LF) TCGCCCTCCG
4873785 << (RF) TGGCGCGCTA
4519989 >> CGCCGCCGA--C-GCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCACGCAGGCCGCCCCCCGCA >> 4520060
4873775 << *********TT*G************************T********************************--**A << 4873703
4520061 >> CAGGCGCAATCCCACACAGCCTGAGCGGGTCAGCGGCCGGAGGCGGTAGCGCAGCGTCACCCCCGCAGGC >> 4520130
4873702 << *C*********CCC***G*******************************************T*-****** << 4873634
Statistics
Matches: 131 (90.34%), Mismatches: 8 (5.52%), Indels: 6 (4.14%)
ATpairs: 21.37%, CGpairs: 78.63%, GTpairs: 0.00%
:i = 4873758
tupleindex: 3
intervalindex: 1
matches_in_interval: 111.0000
lowcenter: 9393737
highcenter: 9393785
testcenter: 9393761
im3: 52.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4875879 center: 9751282 interval size: 80 g: 2
Alignment explanation
Indices: 4875367--4875431,4875852--4875912 Loop: 420 Score: 50
Left Length: 65 Right Length: 61 Average length: 63.0
3 most common centers (desc): 9751282 9751283 9751279
4875357 >> (LF) ACCCCAGCGC
4875922 << (RF) CACCGCGGTC
4875367 >> CTCGCGGATCGCGGCGGCCGCGTCGGCGCCCGGCT-CGCCGAGCAGTTCGGCGGGCGCGGACGCGA >> 4875431
4875912 << *****G**T*A***-**A-**-*****-*A***A*A*******C**********-*****C***** << 4875852
Statistics
Matches: 52 (78.79%), Mismatches: 8 (12.12%), Indels: 6 (9.09%)
ATpairs: 17.31%, CGpairs: 82.69%, GTpairs: 0.00%
:i = 4875879
tupleindex: 2
intervalindex: 1
matches_in_interval: 51.0000
lowcenter: 9751270
highcenter: 9751294
testcenter: 9751282
im3: 16.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 4887404 center: 9774383 interval size: 80 g: 2
Alignment explanation
Indices: 4886962--4887030,4887352--4887421 Loop: 321 Score: 44
Left Length: 69 Right Length: 70 Average length: 69.5
3 most common centers (desc): 9774383 9774382 9774381
4886952 >> (LF) CTGACCTTGA
4887431 << (RF) CTCTATCCTC
4886962 >> CCGGCCGGATCGGGGCGGGCGGCGGCGTGGGCGGAGCGAGCGG-CGTCG-GC-CCGGCCGCGAGCGGCCCGC >> 4887030
4887421 << ***A**T*C****G*TG********A*T******G*-*G*A**A**G**A**T*****C**-********** << 4887352
Statistics
Matches: 54 (75.00%), Mismatches: 13 (18.06%), Indels: 5 (6.94%)
ATpairs: 3.70%, CGpairs: 96.30%, GTpairs: 0.00%
:i = 4887404
tupleindex: 2
intervalindex: 1
matches_in_interval: 110.0000
lowcenter: 9774371
highcenter: 9774395
testcenter: 9774383
im3: 14.0000
frequent_center_ratio*rnkp: 12.7600
Found at i: 4891873 center: 9630489 interval size: 300 g: 3
Alignment explanation
Indices: 4738613--4738675,4891814--4891876 Loop: 153138 Score: 42
Left Length: 63 Right Length: 63 Average length: 63.0
3 most common centers (desc): 9630489 9630487 9630488
4738603 >> (LF) GCAGCTGCTC
4891886 << (RF) CACAGGACGC
4738613 >> GGCCAGCAGCGC-GGCC-GCGCGGCGCACGTCGGCCCGCGCGCGCGGATCGGAGGATCCGGCCGC >> 4738675
4891876 << **A*********G**A*T*****G**T***G**G*C*****-****GG-*****GAC******** << 4891814
Statistics
Matches: 49 (75.38%), Mismatches: 12 (18.46%), Indels: 4 (6.15%)
ATpairs: 8.16%, CGpairs: 91.84%, GTpairs: 0.00%
:i = 4891873
tupleindex: 3
intervalindex: 1
matches_in_interval: 112.0000
lowcenter: 9630465
highcenter: 9630513
testcenter: 9630489
im3: 32.0000
frequent_center_ratio*rnkp: 25.9200
Found at i: 4896047 center: 9341211 interval size: 300 g: 3
Alignment explanation
Indices: 4445142--4445200,4896011--4896069 Loop: 450810 Score: 76
Left Length: 59 Right Length: 59 Average length: 59.0
3 most common centers (desc): 9341211 9341212 0
4445132 >> (LF) CGCCCGCCCA
4896079 << (RF) GCGAGCCACA
4445142 >> GGTCGAGCCCGGCGGCGGGTTCGTCGAGCAGCAGCAGTTCG-GGATCGGTCATCAGCGCG >> 4445200
4896069 << ***********A***A***C****************GG-**G**********C******* << 4896011
Statistics
Matches: 52 (86.67%), Mismatches: 6 (10.00%), Indels: 2 (3.33%)
ATpairs: 25.00%, CGpairs: 75.00%, GTpairs: 0.00%
:i = 4896047
tupleindex: 3
intervalindex: 1
matches_in_interval: 96.0000
lowcenter: 9341187
highcenter: 9341235
testcenter: 9341211
im3: 46.0000
frequent_center_ratio*rnkp: 25.9200
Done.