NFAR.fasta.2.3.5.80.10.40.100000.500000.3.html

Inverted Repeats Finder Program written by:

Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 3.05

Sequence: NFA 2003-09-04
Parameters: 2 3 5 80 10 40 100000 500000 -t7 600000 -d 
Length:  6021225

Tables:   1   2   3   

This is table  3  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
4504672--4505216	545	4922122--4922651	530	416905	68.63	8.38	148	21.86	78.14	16.62	83.38	0.00	9427338	9427323
4504136--4504393	258	4922909--4923169	261	418515	72.66	5.62	139	22.93	77.07	20.62	79.38	0.00	9427302	9427302
4896747--4896797	51	4922984--4923037	54	26186	78.18	9.09	40	15.24	84.76	11.63	88.37	0.00	9819781	9819784
4808362--4808397	36	5000301--5000334	34	191903	86.11	5.56	43	34.29	65.71	35.48	64.52	0.00	9808698	9808697
4977328--4977369	42	5001667--5001708	42	24297	81.40	4.65	42	9.52	90.48	8.57	91.43	0.00	9979036	9979036
4637193--4637240	48	5001688--5001735	48	364447	77.08	0.00	41	7.29	92.71	0.00	100.00	0.00	9638928	9638928
4987931--4988989	1059	5050540--5051596	1057	61550	98.02	0.19	2009	32.04	67.96	31.98	68.02	0.00	10039529	10039528
4873634--4873764	131	5067381--5067509	129	193616	93.13	1.53	213	24.23	75.77	22.95	77.05	0.00	9941145	9941143
4946370--4946640	271	5067381--5067651	271	120740	77.45	2.91	224	25.83	74.17	23.94	76.06	0.00	10014021	10014020
4932054--4932365	312	5072344--5072658	315	139978	73.12	4.06	184	27.43	72.57	23.50	76.50	0.00	10004709	10004709
4691069--4691193	125	5118567--5118691	125	427373	80.47	4.69	119	31.20	68.80	30.10	69.90	0.00	9809760	9809760
4942013--4942468	456	5178006--5178464	459	235537	70.08	8.58	159	30.93	69.07	28.96	71.04	0.00	10120474	10120486
4856025--4856063	39	5210572--5210610	39	354508	90.00	5.00	56	7.69	92.31	5.56	94.44	0.00	10066635	10066635
4770463--4770675	213	5215013--5215225	213	444337	66.82	6.36	47	29.58	70.42	27.89	72.11	0.00	9985688	9985688
4779619--4779719	101	5230434--5230535	102	450714	73.39	13.76	43	20.69	79.31	13.75	86.25	0.00	10010153	10010154
4832991--4833358	368	5233612--5233988	377	400253	71.73	4.97	186	28.86	71.14	27.37	72.63	0.00	10066970	10066979
5079501--5079705	205	5241294--5241495	202	161588	73.68	5.26	121	29.73	70.27	26.62	73.38	0.00	10320999	10320996
5251419--5251500	82	5251913--5251992	80	412	75.00	7.14	51	19.75	80.25	15.87	84.13	0.00	10503413	10503411
5276155--5276175	21	5276747--5276767	21	571	100.00	0.00	42	14.29	85.71	14.29	85.71	0.00	10552922	10552922
4930177--4930848	672	5317249--5317914	666	386400	87.30	2.36	892	27.80	72.20	27.07	72.93	0.00	10248097	10248097
4931878--4932429	552	5317348--5317875	528	384918	71.33	8.85	220	29.17	70.83	26.05	73.95	0.00	10249777	10249777
5067382--5067665	284	5423214--5423503	290	355548	80.41	2.75	281	24.22	75.78	23.08	76.92	0.00	10490879	10490881
Left Indices	Length	Right Indices	Length	Loop	Percent Matches	Percent Indels	Score	Percent A/T	Percent G/C	Percent A-T pairs	Percent G-C pairs	Percent G-T pairs	Center times 2	Average Center times 2
5233801--5233875	75	5515461--5515536	76	281585	81.82	3.90	78	25.83	74.17	26.98	73.02	0.00	10749336	10749337
5283371--5283405	35	5546996--5547030	35	263590	82.86	0.00	40	12.86	87.14	6.90	93.10	0.00	10830401	10830401
5423242--5423503	262	5574955--5575213	259	151451	78.33	1.90	231	24.76	75.24	22.33	77.67	0.00	10998458	10998456
5423167--5423425	259	5574953--5575210	258	151527	79.62	1.15	249	25.15	74.85	22.71	77.29	0.00	10998378	10998378
5579190--5579244	55	5579246--5579300	55	1	76.79	3.57	43	37.27	62.73	37.21	62.79	0.00	11158490	11158490
5291434--5294085	2652	5631987--5634584	2598	337901	67.50	7.83	596	29.39	70.61	27.87	72.13	0.00	10926072	10926045
5387808--5388418	611	5666529--5667139	611	278110	68.20	5.72	186	29.13	70.87	26.34	73.66	0.00	11054947	11054950
5419504--5420483	980	5686224--5687208	985	265740	69.04	5.64	343	30.43	69.57	28.94	71.06	0.00	11106707	11106713
5583628--5584356	729	5700252--5700998	747	115895	70.60	4.50	332	29.27	70.73	28.14	71.86	0.00	11284608	11284626
5709167--5709308	142	5709885--5710026	142	576	71.92	5.48	71	34.15	65.85	32.38	67.62	0.00	11419193	11419193
5708178--5708743	566	5709633--5710207	575	889	70.26	4.96	242	32.87	67.13	32.36	67.64	0.00	11418376	11418385
5423201--5423425	225	5748625--5748850	226	325199	85.90	1.32	288	23.50	76.50	24.10	75.90	0.00	11172050	11172051
5423279--5423500	222	5748630--5748850	221	325129	84.38	2.23	263	23.25	76.75	23.81	76.19	0.00	11172130	11172129
5814739--5814785	47	5814786--5814829	44	0	82.98	6.38	48	16.48	83.52	12.82	87.18	0.00	11629571	11629571
5521175--5521367	193	5822975--5823167	193	301607	69.00	7.00	62	34.46	65.54	31.16	68.84	0.00	11344342	11344342
5841074--5841109	36	5841114--5841149	36	4	83.33	0.00	42	27.78	72.22	26.67	73.33	0.00	11682223	11682223
5444814--5445450	637	5842202--5842841	640	396751	72.73	3.24	371	29.44	70.56	28.39	71.61	0.00	11287652	11287655
5831738--5831785	48	5842724--5842771	48	10938	85.42	0.00	61	32.29	67.71	31.71	68.29	0.00	11674509	11674509
5909212--5909231	20	5909233--5909252	20	1	100.00	0.00	40	30.00	70.00	30.00	70.00	0.00	11818464	11818464
5687229--5688147	919	5991260--5992175	916	303112	75.40	2.05	676	31.93	68.07	31.62	68.38	0.00	11679407	11679407

Tables:   1   2   3

The End!