Tandem Repeats Finder Program written by:
Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 4.00
Sequence: NFA 2003-09-04
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 6021225
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15
File 3 of 7
Found at i:595845 original size:15 final size:15
Alignment explanation
Indices: 595825--595854 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
595815 GACACCACCG
595825 CGCCCGCGGCGGTGC
1 CGCCCGCGGCGGTGC
595840 CGCCCGCGGCGGTGC
1 CGCCCGCGGCGGTGC
595855 TGTTGACCGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.47, G:0.47, T:0.07
Consensus pattern (15 bp):
CGCCCGCGGCGGTGC
Found at i:597315 original size:18 final size:18
Alignment explanation
Indices: 597284--597319 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
597274 GGCCGTCGGA
*
597284 GTGTCCTTCTCGCTCGTC
1 GTGTCCTTCGCGCTCGTC
*
597302 GTGTCTTTCGCGCTCGTC
1 GTGTCCTTCGCGCTCGTC
597320 ACTCCCGAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.36, G:0.25, T:0.39
Consensus pattern (18 bp):
GTGTCCTTCGCGCTCGTC
Found at i:600443 original size:68 final size:68
Alignment explanation
Indices: 600331--600501 Score: 279
Period size: 68 Copynumber: 2.5 Consensus size: 68
600321 GTGTGACCGA
* *
600331 GTTCGGCTCCGCCGGCGGCGCGGTGCGGACCGTGTTCAACGGCGAGCCCCGGGGGTGCGGTGACC
1 GTTCGGCTCCGCCGACGGCGCGGTGCGGACCGCGTTCAACGGCGAGCCCCGGGGGTGCGGTGACC
600396 CAC
66 CAC
*
600399 GTTCGGCTCCGCCGACGGCGCGGTGCGGACCGCGTTCAAGGGCGAGCCCCGGGGGTGCGGTGACC
1 GTTCGGCTCCGCCGACGGCGCGGTGCGGACCGCGTTCAACGGCGAGCCCCGGGGGTGCGGTGACC
600464 CAC
66 CAC
* * * *
600467 GTTCGGCGCGGCCGACGGCGCGATGTGGACCGCGT
1 GTTCGGCTCCGCCGACGGCGCGGTGCGGACCGCGT
600502 CCAGGGTCGG
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 96 1.00
ACGTcount: A:0.09, C:0.35, G:0.43, T:0.13
Consensus pattern (68 bp):
GTTCGGCTCCGCCGACGGCGCGGTGCGGACCGCGTTCAACGGCGAGCCCCGGGGGTGCGGTGACC
CAC
Found at i:609029 original size:24 final size:24
Alignment explanation
Indices: 608993--609102 Score: 100
Period size: 24 Copynumber: 4.6 Consensus size: 24
608983 CCGCCCGGCA
608993 GTGGAT-GAGCGGGGCGGCCTGGCG
1 GTGGATGGA-CGGGGCGGCCTGGCG
* * *
609017 GTGGGTGGACGGGGTGGCCCGGCG
1 GTGGATGGACGGGGCGGCCTGGCG
* * * *
609041 CTGGATGGGCGGGGTGACCTGGCG
1 GTGGATGGACGGGGCGGCCTGGCG
609065 GTGGAT-GAGCGGGGCGGTCC-GGCG
1 GTGGATGGA-CGGGGCGG-CCTGGCG
*
609089 GTGGATGGTCGGGG
1 GTGGATGGACGGGG
609103 TCCGGCGCTG
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
23 1 0.01
24 63 0.91
25 5 0.07
ACGTcount: A:0.07, C:0.19, G:0.59, T:0.15
Consensus pattern (24 bp):
GTGGATGGACGGGGCGGCCTGGCG
Found at i:609096 original size:48 final size:48
Alignment explanation
Indices: 608985--609103 Score: 141
Period size: 48 Copynumber: 2.5 Consensus size: 48
608975 GCGACGGACC
* * * * * *
608985 GCCCGGCAGTGGATGAGCGGGGCGGCCTGGCGGTGGGTGGACGGGGTG
1 GCCCGGCGGTGGATGGGCGGGGTGACCTGGCGGTGGATGGACGGGGCG
*
609033 GCCCGGCGCTGGATGGGCGGGGTGACCTGGCGGTGGAT-GAGCGGGGCG
1 GCCCGGCGGTGGATGGGCGGGGTGACCTGGCGGTGGATGGA-CGGGGCG
* *
609081 GTCCGGCGGTGGATGGTCGGGGT
1 GCCCGGCGGTGGATGGGCGGGGT
609104 CCGGCGCTGG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 2 0.03
48 58 0.97
ACGTcount: A:0.08, C:0.21, G:0.57, T:0.14
Consensus pattern (48 bp):
GCCCGGCGGTGGATGGGCGGGGTGACCTGGCGGTGGATGGACGGGGCG
Found at i:610292 original size:18 final size:18
Alignment explanation
Indices: 610265--610299 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
610255 CTCGTGCCGA
*
610265 TCGCGGTGGCCGCGGTGC
1 TCGCGCTGGCCGCGGTGC
610283 TCGCGCTGGCCGCGGTG
1 TCGCGCTGGCCGCGGTG
610300 GGATTGATCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.34, G:0.49, T:0.17
Consensus pattern (18 bp):
TCGCGCTGGCCGCGGTGC
Found at i:625249 original size:84 final size:84
Alignment explanation
Indices: 625173--625336 Score: 202
Period size: 84 Copynumber: 2.0 Consensus size: 84
625163 GTCGGTCGCG
* * * *
625173 CCCGGTGCCGTGGCCGGCGGTGCGATGCGGGGGTCGGCTGACCGCGGCGGCGTGGCGGGCGATGC
1 CCCGGTGCCGTCGCCGGCGATGCGACGCGGGGGTCGGCTGACCGCGGCGGCGTCGCGGGCGATGC
625238 CGCGCGGGGGTCGGCTGAC
66 CGCGCGGGGGTCGGCTGAC
* ** * * * * * *
625257 CGCGGTGGGGTCGCGGGTGATGCGGCGCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGC
1 CCCGGTGCCGTCGCCGGCGATGCGACGCGGGGGTCGGCTGACCGCGGCGGCGTCGCGGGCGATGC
*
625322 GGCGCGGGGGTCGGC
66 CGCGCGGGGGTCGGC
625337 CGAGCGGGGT
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.04, C:0.27, G:0.55, T:0.13
Consensus pattern (84 bp):
CCCGGTGCCGTCGCCGGCGATGCGACGCGGGGGTCGGCTGACCGCGGCGGCGTCGCGGGCGATGC
CGCGCGGGGGTCGGCTGAC
Found at i:625266 original size:19 final size:19
Alignment explanation
Indices: 625244--625311 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
625234 ATGCCGCGCG
625244 GGGGTCGGCTGACCGCGGT
1 GGGGTCGGCTGACCGCGGT
* *
625263 GGGGTCGCGGGTGATGCGGCGCG-
1 GGGGT--CGGCTGA--CCGCG-GT
625286 GGGGTCGGCTGACCGCGGT
1 GGGGTCGGCTGACCGCGGT
625305 GGGGTCG
1 GGGGTCG
625312 CGGGTGATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
18 1 0.03
19 16 0.41
21 12 0.31
23 9 0.23
24 1 0.03
ACGTcount: A:0.04, C:0.24, G:0.57, T:0.15
Consensus pattern (19 bp):
GGGGTCGGCTGACCGCGGT
Found at i:625290 original size:23 final size:23
Alignment explanation
Indices: 625263--625334 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
625253 TGACCGCGGT
625263 GGGGTCGCGGGTGATGCGGCGCG
1 GGGGTCGCGGGTGATGCGGCGCG
* *
625286 GGGGT--CGGCTGA--CCGCG-G
1 GGGGTCGCGGGTGATGCGGCGCG
625304 TGGGGTCGCGGGTGATGCGGCGCG
1 -GGGGTCGCGGGTGATGCGGCGCG
625328 GGGGTCG
1 GGGGTCG
625335 GCCGAGCGGG
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
18 1 0.03
19 9 0.23
21 12 0.31
23 16 0.41
24 1 0.03
ACGTcount: A:0.04, C:0.22, G:0.60, T:0.14
Consensus pattern (23 bp):
GGGGTCGCGGGTGATGCGGCGCG
Found at i:625323 original size:20 final size:20
Alignment explanation
Indices: 625258--625323 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
625248 TCGGCTGACC
625258 GCGGTGGGGTCGCGGGTGAT
1 GCGGTGGGGTCGCGGGTGAT
* * * *
625278 GCGGCGCGGG-GGTCGGCTGACC
1 GCGGTG-GGGTCG-CGGGTGA-T
625300 GCGGTGGGGTCGCGGGTGAT
1 GCGGTGGGGTCGCGGGTGAT
625320 GCGG
1 GCGG
625324 CGCGGGGGTC
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
20 10 0.29
21 18 0.53
22 6 0.18
ACGTcount: A:0.05, C:0.21, G:0.59, T:0.15
Consensus pattern (20 bp):
GCGGTGGGGTCGCGGGTGAT
Found at i:625384 original size:15 final size:15
Alignment explanation
Indices: 625362--625419 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
625352 GGCCGCTGAC
625362 GTGGCGCGGGGGTCG
1 GTGGCGCGGGGGTCG
* *
625377 GCGGCGCGGGGGTCA
1 GTGGCGCGGGGGTCG
* *
625392 GTGGCGCGCGGATCG
1 GTGGCGCGGGGGTCG
625407 GTGGCGCGCGGGG
1 GTGGCGCG-GGGG
625420 CCGGGCCGGG
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
15 32 0.94
16 2 0.06
ACGTcount: A:0.03, C:0.24, G:0.62, T:0.10
Consensus pattern (15 bp):
GTGGCGCGGGGGTCG
Found at i:625387 original size:42 final size:42
Alignment explanation
Indices: 625199--625378 Score: 243
Period size: 42 Copynumber: 4.3 Consensus size: 42
625189 GCGGTGCGAT
* * * * *
625199 GCGGGGGTCGGCTGACCGCGGCGGCGTGGCGGGCGATGCCGC
1 GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
625241 GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
1 GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
625283 GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
1 GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
* * * * * * * *
625325 GCGGGGGTCGGCCGAGCGGGGTGGGGTGGCCGCTGACGTGGC
1 GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
625367 GCGGGGGTCGGC
1 GCGGGGGTCGGC
625379 GGCGCGGGGG
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 125 1.00
ACGTcount: A:0.04, C:0.26, G:0.58, T:0.12
Consensus pattern (42 bp):
GCGGGGGTCGGCTGACCGCGGTGGGGTCGCGGGTGATGCGGC
Found at i:625396 original size:42 final size:45
Alignment explanation
Indices: 625322--625419 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 45
625312 CGGGTGATGC
** *
625322 GGCGCGGGGGTCGGCCGAGCGGGGTGGGGTGGC-CGCTGA-C-GT
1 GGCGCGGGGGTCGGCCGAGCGGGGTGCAGTGGCGCGCGGATCGGT
* *
625364 GGCGCGGGGGTCGGCGGCGCGGGG-GTCAGTGGCGCGCGGATCGGT
1 GGCGCGGGGGTCGGCCGAGCGGGGTG-CAGTGGCGCGCGGATCGGT
625409 GGCGCGCGGGG
1 GGCGCG-GGGG
625420 CCGGGCCGGG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 27 0.59
43 5 0.11
44 1 0.02
45 8 0.17
46 4 0.09
ACGTcount: A:0.04, C:0.24, G:0.61, T:0.10
Consensus pattern (45 bp):
GGCGCGGGGGTCGGCCGAGCGGGGTGCAGTGGCGCGCGGATCGGT
Found at i:625397 original size:30 final size:31
Alignment explanation
Indices: 625362--625419 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
625352 GGCCGCTGAC
* *
625362 GTGGCGCGGGGGTCGGCGGCGCG-GGGGTCA
1 GTGGCGCGCGGATCGGCGGCGCGCGGGGTCA
*
625392 GTGGCGCGCGGATCGGTGGCGCGCGGGG
1 GTGGCGCGCGGATCGGCGGCGCGCGGGG
625420 CCGGGCCGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.03, C:0.24, G:0.62, T:0.10
Consensus pattern (31 bp):
GTGGCGCGCGGATCGGCGGCGCGCGGGGTCA
Found at i:625493 original size:20 final size:18
Alignment explanation
Indices: 625470--625514 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 18
625460 GGGCTCGCGG
*
625470 CGGGCGGTGCGGGCGGCGT
1 CGGGCGGCGC-GGCGGCGT
625489 CCGGGTCGGCGCGGCGGCGT
1 -CGGG-CGGCGCGGCGGCGT
625509 CGGGCG
1 CGGGCG
625515 ACCCGCTCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 2 0.09
19 4 0.17
20 12 0.52
21 5 0.22
ACGTcount: A:0.00, C:0.31, G:0.60, T:0.09
Consensus pattern (18 bp):
CGGGCGGCGCGGCGGCGT
Found at i:629854 original size:13 final size:13
Alignment explanation
Indices: 629836--629862 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
629826 GGCGGTGGAT
629836 CCCCTGGGAACGA
1 CCCCTGGGAACGA
629849 CCCCTGGGAACGA
1 CCCCTGGGAACGA
629862 C
1 C
629863 ACAGGCGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.41, G:0.30, T:0.07
Consensus pattern (13 bp):
CCCCTGGGAACGA
Found at i:633994 original size:15 final size:15
Alignment explanation
Indices: 633952--634014 Score: 74
Period size: 15 Copynumber: 4.2 Consensus size: 15
633942 GCCGTCGACA
*
633952 CCCGAATCGACCCTG
1 CCCGAATCGACCCCG
* *
633967 -CCAAAGTCCACCCCG
1 CCCGAA-TCGACCCCG
633982 CCCGAATCGACCCCG
1 CCCGAATCGACCCCG
*
633997 CCCGAATCGACTCCG
1 CCCGAATCGACCCCG
634012 CCC
1 CCC
634015 CGGGCGACCA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 4 0.10
15 32 0.80
16 4 0.10
ACGTcount: A:0.21, C:0.52, G:0.17, T:0.10
Consensus pattern (15 bp):
CCCGAATCGACCCCG
Found at i:650015 original size:28 final size:30
Alignment explanation
Indices: 649957--650025 Score: 97
Period size: 28 Copynumber: 2.4 Consensus size: 30
649947 TCCAGTCGGA
* *
649957 CATCGCTGGACCGCGCATTCCCGGCCCGCG
1 CATCTCTGGACCGAGCATTCCCGGCCCGCG
*
649987 CATGTCTGGACCGAGCA-TCCC-GCCCGCG
1 CATCTCTGGACCGAGCATTCCCGGCCCGCG
650015 CATCTCTGGAC
1 CATCTCTGGAC
650026 GCGCGTCTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 17 0.49
29 4 0.11
30 14 0.40
ACGTcount: A:0.13, C:0.43, G:0.28, T:0.16
Consensus pattern (30 bp):
CATCTCTGGACCGAGCATTCCCGGCCCGCG
Found at i:650034 original size:14 final size:14
Alignment explanation
Indices: 650011--650051 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
650001 GCATCCCGCC
*
650011 CGCGCATCTCTGGA
1 CGCGCGTCTCTGGA
*
650025 CGCGCGTCTCTGAA
1 CGCGCGTCTCTGGA
650039 CGCGCGTCTCTGG
1 CGCGCGTCTCTGG
650052 CCCGCGGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.10, C:0.37, G:0.32, T:0.22
Consensus pattern (14 bp):
CGCGCGTCTCTGGA
Found at i:653471 original size:18 final size:16
Alignment explanation
Indices: 653430--653472 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
653420 ACGGCAACGG
653430 CGGCTACGACGTGCGC
1 CGGCTACGACGTGCGC
*
653446 C-ACTACGACGTGCGC
1 CGGCTACGACGTGCGC
653461 ATCGGCTACGAC
1 --CGGCTACGAC
653473 CCGCCCAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 13 0.59
16 1 0.05
17 1 0.05
18 7 0.32
ACGTcount: A:0.19, C:0.37, G:0.30, T:0.14
Consensus pattern (16 bp):
CGGCTACGACGTGCGC
Found at i:670168 original size:9 final size:9
Alignment explanation
Indices: 670152--670185 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
670142 GGTCGCGCTT
670152 GCCACGGCC
1 GCCACGGCC
*
670161 GGCACGGCC
1 GCCACGGCC
*
670170 GCCACAGCC
1 GCCACGGCC
670179 GCCACGG
1 GCCACGG
670186 TCGGCCAGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.15, C:0.50, G:0.35, T:0.00
Consensus pattern (9 bp):
GCCACGGCC
Found at i:672922 original size:17 final size:17
Alignment explanation
Indices: 672889--672922 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
672879 GCAGATCGTC
*
672889 GCCGAGTCGGAGTAGCG
1 GCCGAGTCGGAGCAGCG
*
672906 GCCGAGTCGGCGCAGCG
1 GCCGAGTCGGAGCAGCG
672923 TCAGCGCGCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.29, G:0.47, T:0.09
Consensus pattern (17 bp):
GCCGAGTCGGAGCAGCG
Found at i:691589 original size:54 final size:54
Alignment explanation
Indices: 691531--691784 Score: 228
Period size: 54 Copynumber: 4.6 Consensus size: 54
691521 CACCACACCC
* * * **
691531 GGCGGTCTGCCGCAGCGTGAGCCCGGCGCCAACGGGGTG-CCGCAGCCCGGCGCG
1 GGCGGTCTGCCGCAGCGTCAGCCCGGCGCCAACGGTGCGCCCGC-GCCCACCGCG
* * * *
691585 GGCGGTGGCCTGCCGCAGCGTCAGCCGGGCGCCAGCGGTGC-ACCGCAGCCCGA-GGCG
1 GGCGGT---CTGCCGCAGCGTCAGCCCGGCGCCAACGGTGCGCCCGC-GCCC-ACCGCG
* ** *
691642 GGCGGTCTGCCGCAGCGTCAGCCGGGCGGTAACGGTGCGCCCGCGCCCACCGCC
1 GGCGGTCTGCCGCAGCGTCAGCCCGGCGCCAACGGTGCGCCCGCGCCCACCGCG
* * * *
691696 GGTGGCCTACCGCAGCGTCAGCCCGGCGGCAACGGTGCGCCCGCGCCCACCGCG
1 GGCGGTCTGCCGCAGCGTCAGCCCGGCGCCAACGGTGCGCCCGCGCCCACCGCG
* * * *
691750 GGTGGCCTGCCGCACCG-CGAGCCCGGTGCCAACGG
1 GGCGGTCTGCCGCAGCGTC-AGCCCGGCGCCAACGG
691785 CGCCCCGGAG
Statistics
Matches: 169, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
53 2 0.01
54 118 0.70
55 4 0.02
57 45 0.27
ACGTcount: A:0.10, C:0.41, G:0.41, T:0.08
Consensus pattern (54 bp):
GGCGGTCTGCCGCAGCGTCAGCCCGGCGCCAACGGTGCGCCCGCGCCCACCGCG
Found at i:692081 original size:90 final size:90
Alignment explanation
Indices: 691964--692156 Score: 305
Period size: 90 Copynumber: 2.1 Consensus size: 90
691954 GCCGCGGGTC
* * *
691964 TCCCGCCGCGTGAGGGCGGCCCCTCCGGTCTGCCGCAGCGTGAGGCGGGTCCGAACGGCCTGCCG
1 TCCCGCCGCGCGACGGCGGCCCCTCCGGTCTGCCGCAGCGTGAAGCGGGTCCGAACGGCCTGCCG
*
692029 CAGCGAGGTGCCCCGGCGGGCGGTA
66 CAGCGAGGTGCCCCGCCGGGCGGTA
692054 TCCCGCCGCGCGACGGCGGCCCCTCCGGTCTGCCGCAGCGTGAAGCGGGTCCGAACGGCCTGCCG
1 TCCCGCCGCGCGACGGCGGCCCCTCCGGTCTGCCGCAGCGTGAAGCGGGTCCGAACGGCCTGCCG
* * * *
692119 CAGCGCGGTGCCGCGCCGGGTGGTC
66 CAGCGAGGTGCCCCGCCGGGCGGTA
*
692144 TCCCGCAGCGCGA
1 TCCCGCCGCGCGA
692157 GGGGGCCGCC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 94 1.00
ACGTcount: A:0.09, C:0.40, G:0.40, T:0.11
Consensus pattern (90 bp):
TCCCGCCGCGCGACGGCGGCCCCTCCGGTCTGCCGCAGCGTGAAGCGGGTCCGAACGGCCTGCCG
CAGCGAGGTGCCCCGCCGGGCGGTA
Found at i:692386 original size:21 final size:21
Alignment explanation
Indices: 692357--692403 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
692347 CCGCAGCGTG
* *
692357 GCGGTCTACCCCAGCGGGACA
1 GCGGCCTACCCCAGCGCGACA
* *
692378 GCGGCCTACCCGAGCGCGAGA
1 GCGGCCTACCCCAGCGCGACA
692399 GCGGC
1 GCGGC
692404 GCCAACGGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.17, C:0.38, G:0.38, T:0.06
Consensus pattern (21 bp):
GCGGCCTACCCCAGCGCGACA
Found at i:701696 original size:18 final size:18
Alignment explanation
Indices: 701675--701716 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
701665 AACCGGCGGA
701675 CGCGGAAACACCGGTGGG
1 CGCGGAAACACCGGTGGG
*
701693 CGCGGAAACCCCGGTGGG
1 CGCGGAAACACCGGTGGG
701711 CGCGGA
1 CGCGGA
701717 GGATTCGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.19, C:0.31, G:0.45, T:0.05
Consensus pattern (18 bp):
CGCGGAAACACCGGTGGG
Found at i:701863 original size:21 final size:20
Alignment explanation
Indices: 701839--701877 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
701829 CGCGGCGCTA
*
701839 CGCCGGTGCCGCGCGGTCTTT
1 CGCCGATGCCG-GCGGTCTTT
*
701860 CGCCGATGCTGGCGGTCT
1 CGCCGATGCCGGCGGTCT
701878 CCGGTGAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.03, C:0.36, G:0.38, T:0.23
Consensus pattern (20 bp):
CGCCGATGCCGGCGGTCTTT
Found at i:709724 original size:79 final size:78
Alignment explanation
Indices: 709564--709754 Score: 305
Period size: 79 Copynumber: 2.4 Consensus size: 78
709554 GGCCGCTGAC
*
709564 CGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCGGTGTCGGATTTCGCCTGAGCGGGGCGGCCTG
1 CGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCGGTGTCGGATTGCGCCTGAGCGGGGCGGCCTG
*
709629 CGTGGTGATGCTG
66 CGTGGTGACGCTG
*
709642 CGCTGCCGCCTTCGGCCGCTGACCCGCTCAGGCGGTG-CTGG-TCGTGCGCCTGAGCGGGGCGGC
1 CGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCGGTGTC-GGAT--TGCGCCTGAGCGGGGCGGC
709705 CTGCGTGGTGACGCTG
63 CTGCGTGGTGACGCTG
*
709721 CGCTGCCGTCTCCGGCCGCTGACCCGCTCAGGCG
1 CGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCG
709755 CGGCGCAAGA
Statistics
Matches: 105, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
77 2 0.02
78 38 0.36
79 65 0.62
ACGTcount: A:0.06, C:0.37, G:0.39, T:0.18
Consensus pattern (78 bp):
CGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCGGTGTCGGATTGCGCCTGAGCGGGGCGGCCTG
CGTGGTGACGCTG
Found at i:714525 original size:21 final size:21
Alignment explanation
Indices: 714500--714554 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
714490 GCCGACCCCA
*
714500 CCGTCCGCGACGACCTCGCGG
1 CCGTCCGCGACGACCTCGCCG
714521 CCGTCCTGCG-CGACCTCGCCG
1 CCGTCC-GCGACGACCTCGCCG
* *
714542 CCGCCCTCGACGA
1 CCGTCCGCGACGA
714555 ACACCTCGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 24 0.83
22 3 0.10
ACGTcount: A:0.09, C:0.51, G:0.29, T:0.11
Consensus pattern (21 bp):
CCGTCCGCGACGACCTCGCCG
Found at i:716657 original size:17 final size:19
Alignment explanation
Indices: 716624--716663 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
716614 GCCTCCAAGG
*
716624 CGATGAGCTCGGAGTTC-T
1 CGATGAACTCGGAGTTCGT
716642 CGATGAACTC-GAGTTCGT
1 CGATGAACTCGGAGTTCGT
716660 CGAT
1 CGAT
716664 CTGGCCTCGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.28
Consensus pattern (19 bp):
CGATGAACTCGGAGTTCGT
Found at i:718672 original size:21 final size:21
Alignment explanation
Indices: 718648--718691 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
718638 CGATGCCCTC
* * *
718648 CTTGGCGTTGCCTACGTTGAG
1 CTTGGCCTTGCCCACGTCGAG
718669 CTTGGCCTTGCCCACGTCGAG
1 CTTGGCCTTGCCCACGTCGAG
718690 CT
1 CT
718692 GTTCCACCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.32, G:0.30, T:0.30
Consensus pattern (21 bp):
CTTGGCCTTGCCCACGTCGAG
Found at i:729419 original size:15 final size:15
Alignment explanation
Indices: 729399--729431 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
729389 TGCCGGTGCG
729399 ACCGATCGCAACACC
1 ACCGATCGCAACACC
729414 ACCGATCGCAACACC
1 ACCGATCGCAACACC
729429 ACC
1 ACC
729432 TCGGGTGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.48, G:0.12, T:0.06
Consensus pattern (15 bp):
ACCGATCGCAACACC
Found at i:740915 original size:18 final size:18
Alignment explanation
Indices: 740894--740928 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
740884 CGAAGCAGAT
740894 CGCCGAGCCCGCCCCGGC
1 CGCCGAGCCCGCCCCGGC
* *
740912 CGCCGATCCCGCGCCGG
1 CGCCGAGCCCGCCCCGG
740929 TCACCCAGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.57, G:0.34, T:0.03
Consensus pattern (18 bp):
CGCCGAGCCCGCCCCGGC
Found at i:789116 original size:18 final size:18
Alignment explanation
Indices: 789095--789132 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
789085 ACAACATCAT
789095 CGTCATCGACAAGGGCAC
1 CGTCATCGACAAGGGCAC
* *
789113 CGTCATCGCCGAGGGCAC
1 CGTCATCGACAAGGGCAC
789131 CG
1 CG
789133 CCGACGAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.37, G:0.32, T:0.11
Consensus pattern (18 bp):
CGTCATCGACAAGGGCAC
Found at i:796014 original size:18 final size:18
Alignment explanation
Indices: 795991--796027 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
795981 CCCCGGATCA
*
795991 GCTGAACACCTACGACGT
1 GCTGAACACCGACGACGT
*
796009 GCTGAACAGCGACGACGT
1 GCTGAACACCGACGACGT
796027 G
1 G
796028 GTCTTCAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.30, T:0.14
Consensus pattern (18 bp):
GCTGAACACCGACGACGT
Found at i:816530 original size:20 final size:20
Alignment explanation
Indices: 816501--816541 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
816491 GTTTTCGCGG
*
816501 GGTTCGGTGGTAGGCGGGCT
1 GGTTCAGTGGTAGGCGGGCT
816521 GGTTCAGTGGTAGGCGGGCT
1 GGTTCAGTGGTAGGCGGGCT
816541 G
1 G
816542 TGGCGCCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.07, C:0.15, G:0.54, T:0.24
Consensus pattern (20 bp):
GGTTCAGTGGTAGGCGGGCT
Found at i:822250 original size:15 final size:15
Alignment explanation
Indices: 822230--822259 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
822220 TTCGCTCGTC
822230 ACCTTGGTCATCCGA
1 ACCTTGGTCATCCGA
822245 ACCTTGGTCATCCGA
1 ACCTTGGTCATCCGA
822260 TTCGGTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (15 bp):
ACCTTGGTCATCCGA
Found at i:825591 original size:24 final size:23
Alignment explanation
Indices: 825551--825597 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
825541 TGGCGTTGCA
825551 GGAGAACCTGACCCTCGTGCCGCG
1 GGAGAACCTGACCCTCG-GCCGCG
*
825575 GGAGAAGCTG-CCGCTCGGCCGCG
1 GGAGAACCTGACC-CTCGGCCGCG
825598 ACGTCAAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.15, C:0.36, G:0.38, T:0.11
Consensus pattern (23 bp):
GGAGAACCTGACCCTCGGCCGCG
Found at i:842903 original size:18 final size:18
Alignment explanation
Indices: 842880--842914 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
842870 TCTGCACCGA
842880 GGGCAGCTCGGC-GTAGCC
1 GGGCAGCT-GGCGGTAGCC
842898 GGGCAGCTGGCGGTAGC
1 GGGCAGCTGGCGGTAGC
842915 GCTCGTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.11, C:0.29, G:0.49, T:0.11
Consensus pattern (18 bp):
GGGCAGCTGGCGGTAGCC
Found at i:863999 original size:15 final size:15
Alignment explanation
Indices: 863958--864012 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
863948 CTCGGCCGGT
*
863958 GTGGTGGCGG-CGGG
1 GTGGTCGCGGTCGGG
* *
863972 AGTTGTCGAGGTCGGG
1 -GTGGTCGCGGTCGGG
863988 GTGGTCGCGGTCGGG
1 GTGGTCGCGGTCGGG
864003 GTGGTCGCGG
1 GTGGTCGCGG
864013 CCGGCCCGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.04, C:0.16, G:0.60, T:0.20
Consensus pattern (15 bp):
GTGGTCGCGGTCGGG
Found at i:866693 original size:18 final size:18
Alignment explanation
Indices: 866562--866697 Score: 94
Period size: 18 Copynumber: 7.6 Consensus size: 18
866552 CGTCGCCGCC
*
866562 GAGGTGCCCGCCGGCGTA
1 GAGGTGCCCGGCGGCGTA
* **
866580 GGGGTGCCCGATGGCGTA
1 GAGGTGCCCGGCGGCGTA
*
866598 GCGGTGCCCGGCGAG-GTA
1 GAGGTGCCCGGCG-GCGTA
* * * *
866616 GAAGTGCCCGGCTGTGTG
1 GAGGTGCCCGGCGGCGTA
** * * *
866634 GAGGTGTTCGTCGACGTG
1 GAGGTGCCCGGCGGCGTA
* * *
866652 GAGGTGCCCGGCTGTGTG
1 GAGGTGCCCGGCGGCGTA
866670 GAGGTGCCCGGCGGCGTA
1 GAGGTGCCCGGCGGCGTA
*
866688 GCGGTGCCCG
1 GAGGTGCCCG
866698 ACGACGAAGT
Statistics
Matches: 89, Mismatches: 27, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
17 1 0.01
18 87 0.98
19 1 0.01
ACGTcount: A:0.10, C:0.26, G:0.48, T:0.17
Consensus pattern (18 bp):
GAGGTGCCCGGCGGCGTA
Found at i:866694 original size:36 final size:36
Alignment explanation
Indices: 866562--866697 Score: 123
Period size: 36 Copynumber: 3.8 Consensus size: 36
866552 CGTCGCCGCC
* * * * *
866562 GAGGTGCCCGCCGGCGTAGGGGTGCCC-GATGGCGTA
1 GAGGTGCCCGGCGGCGTAGAGGTGCCCGGCT-GTGTG
* *
866598 GCGGTGCCCGGCGAG-GTAGAAGTGCCCGGCTGTGTG
1 GAGGTGCCCGGCG-GCGTAGAGGTGCCCGGCTGTGTG
** * * *
866634 GAGGTGTTCGTCGACGTGGAGGTGCCCGGCTGTGTG
1 GAGGTGCCCGGCGGCGTAGAGGTGCCCGGCTGTGTG
*
866670 GAGGTGCCCGGCGGCGTAGCGGTGCCCG
1 GAGGTGCCCGGCGGCGTAGAGGTGCCCG
866698 ACGACGAAGT
Statistics
Matches: 77, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
36 74 0.96
37 3 0.04
ACGTcount: A:0.10, C:0.26, G:0.48, T:0.17
Consensus pattern (36 bp):
GAGGTGCCCGGCGGCGTAGAGGTGCCCGGCTGTGTG
Found at i:866703 original size:54 final size:54
Alignment explanation
Indices: 866562--866703 Score: 124
Period size: 54 Copynumber: 2.6 Consensus size: 54
866552 CGTCGCCGCC
* * * * *
866562 GAGGTGCCCGCCGGCGTAGGGGTGCCCGATGGCGTAGCGGTGCCCGGCGAGGTA
1 GAGGTGCCCGGCGGCGTAGAGGTGCCCGACGACGTAGAGGTGCCCGGCGAGGTA
* * * * ** * * * *
866616 GAAGTGCCCGGCTGTGTGGAGGTGTTCGTCGACGTGGAGGTGCCCGGCTG-TGTG
1 GAGGTGCCCGGCGGCGTAGAGGTGCCCGACGACGTAGAGGTGCCCGGC-GAGGTA
*
866670 GAGGTGCCCGGCGGCGTAGCGGTGCCCGACGACG
1 GAGGTGCCCGGCGGCGTAGAGGTGCCCGACGACG
866704 AAGTGCCGCC
Statistics
Matches: 64, Mismatches: 23, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
54 63 0.98
55 1 0.02
ACGTcount: A:0.11, C:0.26, G:0.47, T:0.16
Consensus pattern (54 bp):
GAGGTGCCCGGCGGCGTAGAGGTGCCCGACGACGTAGAGGTGCCCGGCGAGGTA
Found at i:876050 original size:15 final size:15
Alignment explanation
Indices: 876027--876096 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 15
876017 AATCCGGGCA
* *
876027 CCGGCAACCCGGGGT
1 CCGGTAACCCGGGTT
*
876042 CGGGTAACCCGGGTT
1 CCGGTAACCCGGGTT
* * * *
876057 CTGGGAATCCTGGTT
1 CCGGTAACCCGGGTT
876072 CCGGTAACCCGGGTT
1 CCGGTAACCCGGGTT
876087 CCGGTAACCC
1 CCGGTAACCC
876097 CGGCTCGGCT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.19
Consensus pattern (15 bp):
CCGGTAACCCGGGTT
Found at i:876618 original size:15 final size:15
Alignment explanation
Indices: 876598--876644 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
876588 CACAATCCAT
*
876598 CGAGCCGCAGGCCAC
1 CGAGCCGCAGACCAC
*
876613 CGAGCCGCAGACGAC
1 CGAGCCGCAGACCAC
*
876628 CGAGTCGCAGACCAC
1 CGAGCCGCAGACCAC
876643 CG
1 CG
876645 GGCAGAACAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.23, C:0.43, G:0.32, T:0.02
Consensus pattern (15 bp):
CGAGCCGCAGACCAC
Found at i:877814 original size:15 final size:15
Alignment explanation
Indices: 877794--877843 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
877784 CGCAGCGCGG
*
877794 CCGAACCAGTCGCCT
1 CCGAACCAGTTGCCT
877809 CCGAACCAGTTGCCT
1 CCGAACCAGTTGCCT
*
877824 CCGAACCAGTTGCCA
1 CCGAACCAGTTGCCT
877839 CCGAA
1 CCGAA
877844 TCACGTTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.24, C:0.42, G:0.20, T:0.14
Consensus pattern (15 bp):
CCGAACCAGTTGCCT
Found at i:881012 original size:24 final size:24
Alignment explanation
Indices: 880984--881036 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
880974 CCCGGGGAAT
880984 CCCGCCAGACGCCCGGC-CCGGCGG
1 CCCGCCAGACGCCC-GCACCGGCGG
* * *
881008 CCCGCCCGTCGGCCGCACCGGCGG
1 CCCGCCAGACGCCCGCACCGGCGG
881032 CCCGC
1 CCCGC
881037 GCGGGCATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.06, C:0.57, G:0.36, T:0.02
Consensus pattern (24 bp):
CCCGCCAGACGCCCGCACCGGCGG
Found at i:881020 original size:12 final size:12
Alignment explanation
Indices: 880994--881036 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
880984 CCCGCCAGAC
880994 GCCCGGCCCGGCG
1 GCCC-GCCCGGCG
*
881007 GCCCGCCCGTCG
1 GCCCGCCCGGCG
881019 G-CCGCACCGGCG
1 GCCCGC-CCGGCG
881031 GCCCGC
1 GCCCGC
881037 GCGGGCATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 4 0.15
12 14 0.54
13 8 0.31
ACGTcount: A:0.02, C:0.56, G:0.40, T:0.02
Consensus pattern (12 bp):
GCCCGCCCGGCG
Found at i:884240 original size:17 final size:17
Alignment explanation
Indices: 884208--884240 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
884198 CTCCGACGCG
884208 GGCCGCGCGCTCGGCCT
1 GGCCGCGCGCTCGGCCT
884225 GGCCGACGCGCT-GGCC
1 GGCCG-CGCGCTCGGCC
884241 GGGGTGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.03, C:0.45, G:0.42, T:0.09
Consensus pattern (17 bp):
GGCCGCGCGCTCGGCCT
Found at i:888900 original size:15 final size:15
Alignment explanation
Indices: 888877--888911 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
888867 CCCGGCCGCC
888877 CGCCCGCCACGCCGG
1 CGCCCGCCACGCCGG
*
888892 CGCCGGCCACGCCGG
1 CGCCCGCCACGCCGG
*
888907 AGCCC
1 CGCCC
888912 CCGGACGATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.57, G:0.34, T:0.00
Consensus pattern (15 bp):
CGCCCGCCACGCCGG
Found at i:898074 original size:6 final size:6
Alignment explanation
Indices: 898063--898127 Score: 130
Period size: 6 Copynumber: 10.8 Consensus size: 6
898053 ACCCTCGGTG
898063 CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT
1 CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT CCGAGT
898111 CCGAGT CCGAGT CCGAG
1 CCGAGT CCGAGT CCGAG
898128 CCCGGCGTGC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.15
Consensus pattern (6 bp):
CCGAGT
Found at i:898259 original size:18 final size:18
Alignment explanation
Indices: 898236--898405 Score: 91
Period size: 18 Copynumber: 9.6 Consensus size: 18
898226 CATGCGGACC
898236 GACGGTGATCG-CCGCTCG
1 GACGGTGA-CGCCCGCTCG
898254 GACGGTG-C-CCC-CTCG
1 GACGGTGACGCCCGCTCG
** *
898269 GACGGTG-CTGCCCGGACC
1 GACGGTGAC-GCCCGCTCG
*
898287 GACGGTGACGCCCGATCG
1 GACGGTGACGCCCGCTCG
* *
898305 GACGGTGACGTCCGCCCG
1 GACGGTGACGCCCGCTCG
** **
898323 GACGGTGACGCAGGGACG
1 GACGGTGACGCCCGCTCG
* ** **
898341 GACAGTGACGCAGGGACG
1 GACGGTGACGCCCGCTCG
** **
898359 GACGGTGACGCAGGGACG
1 GACGGTGACGCCCGCTCG
*
898377 GACAGTGACGCCCG-TCCG
1 GACGGTGACGCCCGCT-CG
898395 GACGGTGACGC
1 GACGGTGACGC
898406 ACGGACGGAG
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
15 12 0.10
16 3 0.02
17 3 0.02
18 106 0.85
19 1 0.01
ACGTcount: A:0.16, C:0.32, G:0.41, T:0.10
Consensus pattern (18 bp):
GACGGTGACGCCCGCTCG
Found at i:898414 original size:18 final size:18
Alignment explanation
Indices: 898267--898562 Score: 206
Period size: 18 Copynumber: 16.4 Consensus size: 18
898257 GGTGCCCCCT
*
898267 CGGACGGTG-CTGCCCGGA
1 CGGACGGTGAC-GCACGGA
* *
898285 CCGACGGTGACGC-CCGA
1 CGGACGGTGACGCACGGA
**
898302 TCGGACGGTGACGTC-CGCC
1 -CGGACGGTGACG-CACGGA
*
898321 CGGACGGTGACGCAGGGA
1 CGGACGGTGACGCACGGA
* *
898339 CGGACAGTGACGCAGGGA
1 CGGACGGTGACGCACGGA
*
898357 CGGACGGTGACGCAGGGA
1 CGGACGGTGACGCACGGA
* * **
898375 CGGACAGTGACGCCCGTC
1 CGGACGGTGACGCACGGA
898393 CGGACGGTGACGCACGGA
1 CGGACGGTGACGCACGGA
* ** *
898411 CGGAGGGAAACGCGCGGA
1 CGGACGGTGACGCACGGA
*
898429 CGGA-GGTTGACGCGCGGA
1 CGGACGG-TGACGCACGGA
* *
898447 CGGAGGGTGACGCGCGGA
1 CGGACGGTGACGCACGGA
* *
898465 CGGACGGTGGCGCGCGGA
1 CGGACGGTGACGCACGGA
** *
898483 CGGTGGGTGACGCGCGGA
1 CGGACGGTGACGCACGGA
* * *
898501 CGGA-GGGGAACGCACCGC
1 CGGACGGTG-ACGCACGGA
* * * * **
898519 CGGAGGGGGATGCCCGCC
1 CGGACGGTGACGCACGGA
898537 CGGACGGTGACGCACGGA
1 CGGACGGTGACGCACGGA
898555 CGGACGGT
1 CGGACGGT
898563 CAAACCCGCT
Statistics
Matches: 224, Mismatches: 46, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
17 9 0.04
18 206 0.92
19 9 0.04
ACGTcount: A:0.18, C:0.28, G:0.47, T:0.07
Consensus pattern (18 bp):
CGGACGGTGACGCACGGA
Found at i:898835 original size:12 final size:12
Alignment explanation
Indices: 898818--898847 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
898808 TCCGGGCGAT
898818 CCGCCGCACGAC
1 CCGCCGCACGAC
*
898830 CCGCCGCACGAT
1 CCGCCGCACGAC
898842 CCGCCG
1 CCGCCG
898848 GGTTCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.57, G:0.27, T:0.03
Consensus pattern (12 bp):
CCGCCGCACGAC
Found at i:898900 original size:24 final size:23
Alignment explanation
Indices: 898869--898944 Score: 93
Period size: 24 Copynumber: 3.3 Consensus size: 23
898859 CCCGCCGACC
898869 CCGCCCGCCACGGACTGCCCGCTG
1 CCGCCCGCCACGGACTGCCCGC-G
**
898893 CCGCCCGCTGCGGACTG-CC-CG
1 CCGCCCGCCACGGACTGCCCGCG
898914 CCGCCCGCCACGGACTGCCCGCCG
1 CCGCCCGCCACGGACTGCCCG-CG
*
898938 CCACCCG
1 CCGCCCG
898945 GCGCGGACAG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 16 0.36
22 3 0.07
23 2 0.05
24 23 0.52
ACGTcount: A:0.08, C:0.57, G:0.29, T:0.07
Consensus pattern (23 bp):
CCGCCCGCCACGGACTGCCCGCG
Found at i:898918 original size:21 final size:21
Alignment explanation
Indices: 898869--898939 Score: 97
Period size: 21 Copynumber: 3.2 Consensus size: 21
898859 CCCGCCGACC
898869 CCGCCCGCCACGGACTGCCCGCTG
1 CCGCCCGCCACGGACTG-CC-C-G
**
898893 CCGCCCGCTGCGGACTGCCCG
1 CCGCCCGCCACGGACTGCCCG
898914 CCGCCCGCCACGGACTGCCCG
1 CCGCCCGCCACGGACTGCCCG
898935 CCGCC
1 CCGCC
898940 ACCCGGCGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
21 25 0.58
22 1 0.02
23 2 0.05
24 15 0.35
ACGTcount: A:0.07, C:0.56, G:0.30, T:0.07
Consensus pattern (21 bp):
CCGCCCGCCACGGACTGCCCG
Found at i:898951 original size:24 final size:23
Alignment explanation
Indices: 898879--898952 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
898869 CCGCCCGCCA
*
898879 CGGACTGCCCGCTGCCGCCC-GCTG
1 CGGACTGCCCGCCGCC-CCCGGC-G
* *
898903 CGGACTGCCCGCCG--CCCGCCA
1 CGGACTGCCCGCCGCCCCCGGCG
898924 CGGACTGCCCGCCGCCACCCGGCG
1 CGGACTGCCCGCCGCC-CCCGGCG
898948 CGGAC
1 CGGAC
898953 AGTCCACCAG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
21 17 0.41
22 1 0.02
24 23 0.56
ACGTcount: A:0.08, C:0.53, G:0.32, T:0.07
Consensus pattern (23 bp):
CGGACTGCCCGCCGCCCCCGGCG
Found at i:899497 original size:30 final size:30
Alignment explanation
Indices: 899097--899489 Score: 786
Period size: 30 Copynumber: 13.1 Consensus size: 30
899087 CGGCACCTGC
899097 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899127 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899157 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899187 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899217 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899247 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899277 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899307 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899337 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899367 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899397 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899427 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899457 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
1 CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
899487 CCG
1 CCG
899490 CCCGGTGGAT
Statistics
Matches: 363, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 363 1.00
ACGTcount: A:0.03, C:0.20, G:0.53, T:0.23
Consensus pattern (30 bp):
CCGTCTGGTGGGTGGTCGCCGGGTGAGGTG
Found at i:899515 original size:30 final size:30
Alignment explanation
Indices: 899481--899539 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
899471 GTCGCCGGGT
*
899481 GAGGTGCCGCCCGGTGGATGGTTCCCCGGC
1 GAGGTGCCGCCCGATGGATGGTTCCCCGGC
* * *
899511 GAGGTTCCTCCCGATGGTTGGTTCCCCGG
1 GAGGTGCCGCCCGATGGATGGTTCCCCGG
899540 TGCGATCCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.07, C:0.32, G:0.39, T:0.22
Consensus pattern (30 bp):
GAGGTGCCGCCCGATGGATGGTTCCCCGGC
Found at i:903504 original size:12 final size:12
Alignment explanation
Indices: 903487--903579 Score: 78
Period size: 12 Copynumber: 7.2 Consensus size: 12
903477 TGCGCGACCT
903487 GGCCGCCCAGCA
1 GGCCGCCCAGCA
903499 GGCCGCCGCGCAGCA
1 GGCCG-C-C-CAGCA
* *
903514 GGCGGCGCAGCA
1 GGCCGCCCAGCA
903526 GGCCGCCGCCCAGCA
1 -G--GCCGCCCAGCA
*
903541 GTCCGCCCAGCA
1 GGCCGCCCAGCA
* * *
903553 AGCGGCGCAGCA
1 GGCCGCCCAGCA
903565 GGCCGCCCAGCA
1 GGCCGCCCAGCA
903577 GGC
1 GGC
903580 GCAGCAGGCT
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
12 40 0.63
13 2 0.03
14 3 0.05
15 18 0.29
ACGTcount: A:0.16, C:0.45, G:0.38, T:0.01
Consensus pattern (12 bp):
GGCCGCCCAGCA
Found at i:903512 original size:15 final size:15
Alignment explanation
Indices: 903488--903547 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
903478 GCGCGACCTG
903488 GCCGCCCAGCAGGCC
1 GCCGCCCAGCAGGCC
*
903503 GCCGCGCAGCAGG-C
1 GCCGCCCAGCAGGCC
*
903517 G--GCGCAGCAGGCC
1 GCCGCCCAGCAGGCC
*
903530 GCCGCCCAGCAGTCC
1 GCCGCCCAGCAGGCC
903545 GCC
1 GCC
903548 CAGCAAGCGG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
12 10 0.26
13 2 0.05
14 2 0.05
15 25 0.64
ACGTcount: A:0.13, C:0.48, G:0.37, T:0.02
Consensus pattern (15 bp):
GCCGCCCAGCAGGCC
Found at i:903524 original size:27 final size:27
Alignment explanation
Indices: 903487--903579 Score: 120
Period size: 27 Copynumber: 3.6 Consensus size: 27
903477 TGCGCGACCT
903487 GGCCGCCCAGCAGGCCGCCGCGCAGCA
1 GGCCGCCCAGCAGGCCGCCGCGCAGCA
* * *
903514 GGCGGCGCAGCAGGCCGCCGCCCAGCA
1 GGCCGCCCAGCAGGCCGCCGCGCAGCA
* *
903541 GTCCGCCCAGCAAG-CG--GCGCAGCA
1 GGCCGCCCAGCAGGCCGCCGCGCAGCA
903565 GGCCGCCCAGCAGGC
1 GGCCGCCCAGCAGGC
903580 GCAGCAGGCT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 19 0.35
26 2 0.04
27 34 0.62
ACGTcount: A:0.16, C:0.45, G:0.38, T:0.01
Consensus pattern (27 bp):
GGCCGCCCAGCAGGCCGCCGCGCAGCA
Found at i:903552 original size:39 final size:42
Alignment explanation
Indices: 903488--903571 Score: 129
Period size: 39 Copynumber: 2.1 Consensus size: 42
903478 GCGCGACCTG
*
903488 GCCGCCCAGCAGGCCGCCGCGCAGCAGGCGGCGCAGCAGGCC
1 GCCGCCCAGCAGGCCGCCGCGCAGCAAGCGGCGCAGCAGGCC
*
903530 GCCGCCCAGCAGTCCG-C-C-CAGCAAGCGGCGCAGCAGGCC
1 GCCGCCCAGCAGGCCGCCGCGCAGCAAGCGGCGCAGCAGGCC
903569 GCC
1 GCC
903572 CAGCAGGCGC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
39 23 0.57
40 1 0.03
41 1 0.03
42 15 0.38
ACGTcount: A:0.15, C:0.46, G:0.37, T:0.01
Consensus pattern (42 bp):
GCCGCCCAGCAGGCCGCCGCGCAGCAAGCGGCGCAGCAGGCC
Found at i:903580 original size:21 final size:23
Alignment explanation
Indices: 903536--903588 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
903526 GGCCGCCGCC
*
903536 CAGCAGTCCGCCCAGCAAGCGGCG
1 CAGCAGGCCGCCCAGCAA-CGGCG
903560 CAGCAGGCCGCCCAGC-A-GGCG
1 CAGCAGGCCGCCCAGCAACGGCG
903581 CAGCAGGC
1 CAGCAGGC
903589 TTTGCAGCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 12 0.43
23 1 0.04
24 15 0.54
ACGTcount: A:0.21, C:0.42, G:0.36, T:0.02
Consensus pattern (23 bp):
CAGCAGGCCGCCCAGCAACGGCG
Found at i:903615 original size:33 final size:33
Alignment explanation
Indices: 903578--903652 Score: 96
Period size: 33 Copynumber: 2.3 Consensus size: 33
903568 CGCCCAGCAG
** * *
903578 GCGCAGCAGGCTTTGCAGCAGGGCTTGCAGGGC
1 GCGCAGCAGGCGATCCAGCAAGGCTTGCAGGGC
*
903611 GCGCAGCAGGCGATCCAGGAAGGCTTGCAGGGC
1 GCGCAGCAGGCGATCCAGCAAGGCTTGCAGGGC
*
903644 GCCCAGCAG
1 GCGCAGCAG
903653 AACATGCAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.19, C:0.29, G:0.41, T:0.11
Consensus pattern (33 bp):
GCGCAGCAGGCGATCCAGCAAGGCTTGCAGGGC
Found at i:906895 original size:15 final size:15
Alignment explanation
Indices: 906875--906924 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
906865 GAAGGCGCTG
906875 GGTGGCGGTGCGGGC
1 GGTGGCGGTGCGGGC
**
906890 GGTGGCGCCGCGGGC
1 GGTGGCGGTGCGGGC
*
906905 GGCGGC-GT-C-GGC
1 GGTGGCGGTGCGGGC
906917 GGTGGCGG
1 GGTGGCGG
906925 CGGCTTCGCG
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 8 0.29
13 2 0.07
15 18 0.64
ACGTcount: A:0.00, C:0.26, G:0.64, T:0.10
Consensus pattern (15 bp):
GGTGGCGGTGCGGGC
Found at i:918685 original size:15 final size:15
Alignment explanation
Indices: 918667--918697 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
918657 ACCTGGACCA
*
918667 CCTCGATCGGGAAGT
1 CCTCGACCGGGAAGT
918682 CCTCGACCGGGAAGT
1 CCTCGACCGGGAAGT
918697 C
1 C
918698 ACCGAGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (15 bp):
CCTCGACCGGGAAGT
Found at i:924269 original size:20 final size:20
Alignment explanation
Indices: 924232--924269 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
924222 CCGGTAGTCA
*
924232 CCGCGCACCGGCTGCCTGAT
1 CCGCGCACCAGCTGCCTGAT
924252 CCGCGCGACCAGCT-CCTG
1 CCGCGC-ACCAGCTGCCTG
924270 CAGCCGTCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.11, C:0.47, G:0.29, T:0.13
Consensus pattern (20 bp):
CCGCGCACCAGCTGCCTGAT
Found at i:924575 original size:18 final size:18
Alignment explanation
Indices: 924552--924615 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
924542 GGTGCTGTTC
924552 GCCGGGCGCCGCCGGGTA
1 GCCGGGCGCCGCCGGGTA
* * * *
924570 GCCGGGCTCGGGCAGGTA
1 GCCGGGCGCCGCCGGGTA
* *
924588 GCCGGGC-TCGCCGGGTC
1 GCCGGGCGCCGCCGGGTA
*
924605 GCCGGTCGCCG
1 GCCGGGCGCCG
924616 GGGATGTGGT
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
17 11 0.32
18 23 0.68
ACGTcount: A:0.05, C:0.38, G:0.48, T:0.09
Consensus pattern (18 bp):
GCCGGGCGCCGCCGGGTA
Found at i:925427 original size:18 final size:18
Alignment explanation
Indices: 925406--925579 Score: 156
Period size: 18 Copynumber: 9.7 Consensus size: 18
925396 CGAAGCGATT
925406 CGGGCGCGCTGGTATCCG
1 CGGGCGCGCTGGTATCCG
**
925424 CGGGCGCGCTGGTATTTG
1 CGGGCGCGCTGGTATCCG
* *
925442 CGGGCGCGCCGGCATCCG
1 CGGGCGCGCTGGTATCCG
*
925460 CGGGCGCG-TGGGTATCTG
1 CGGGCGCGCT-GGTATCCG
* * *
925478 CGGGGGCGCTGGCATGCG
1 CGGGCGCGCTGGTATCCG
*
925496 CGGGCGCG-TGGGTATCTG
1 CGGGCGCGCT-GGTATCCG
* * *
925514 CGGGGGCGCTGGCATGCG
1 CGGGCGCGCTGGTATCCG
**
925532 CGGGCGCG-TGGGTATTTG
1 CGGGCGCGCT-GGTATCCG
* *
925550 CGGGCGCGCTGGCATGCG
1 CGGGCGCGCTGGTATCCG
925568 CGGGCGCGCTGG
1 CGGGCGCGCTGG
925580 CGTTTGCGCG
Statistics
Matches: 122, Mismatches: 28, Indels: 12
0.75 0.17 0.07
Matches are distributed among these distances:
17 2 0.02
18 117 0.96
19 3 0.02
ACGTcount: A:0.05, C:0.28, G:0.50, T:0.17
Consensus pattern (18 bp):
CGGGCGCGCTGGTATCCG
Found at i:925446 original size:36 final size:36
Alignment explanation
Indices: 925406--925575 Score: 252
Period size: 36 Copynumber: 4.7 Consensus size: 36
925396 CGAAGCGATT
* * *
925406 CGGGCGCGCTGGTATCCGCGGGCGCGCT-GGTATTTG
1 CGGGCGCGCTGGCATGCGCGGGCGCG-TGGGTATCTG
* *
925442 CGGGCGCGCCGGCATCCGCGGGCGCGTGGGTATCTG
1 CGGGCGCGCTGGCATGCGCGGGCGCGTGGGTATCTG
*
925478 CGGGGGCGCTGGCATGCGCGGGCGCGTGGGTATCTG
1 CGGGCGCGCTGGCATGCGCGGGCGCGTGGGTATCTG
* *
925514 CGGGGGCGCTGGCATGCGCGGGCGCGTGGGTATTTG
1 CGGGCGCGCTGGCATGCGCGGGCGCGTGGGTATCTG
925550 CGGGCGCGCTGGCATGCGCGGGCGCG
1 CGGGCGCGCTGGCATGCGCGGGCGCG
925576 CTGGCGTTTG
Statistics
Matches: 125, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
35 1 0.01
36 124 0.99
ACGTcount: A:0.05, C:0.28, G:0.50, T:0.16
Consensus pattern (36 bp):
CGGGCGCGCTGGCATGCGCGGGCGCGTGGGTATCTG
Found at i:926504 original size:30 final size:30
Alignment explanation
Indices: 926468--926707 Score: 159
Period size: 30 Copynumber: 8.0 Consensus size: 30
926458 CCCATCCCGT
*
926468 GGGTCGGACGGGCAGGGATGGGGCCGCTCG
1 GGGTCGGACCGGCAGGGATGGGGCCGCTCG
* *
926498 GGGTCGGACTGGCA-GGAGTGGGGCCGCCCG
1 GGGTCGGACCGGCAGGGA-TGGGGCCGCTCG
*** * *
926528 ATATCGGTCC-GCTGGGGATGGGGCCGCTCG
1 GGGTCGGACCGGC-AGGGATGGGGCCGCTCG
*
926558 GGGTCGGACCGCCA-GGAGTGGGGCCGCTCG
1 GGGTCGGACCGGCAGGGA-TGGGGCCGCTCG
**** * *
926588 ATACCGG-CCCGCTGGGGATGGGGCCGCTCG
1 GGGTCGGACCGGC-AGGGATGGGGCCGCTCG
*
926618 GGGTCGGACCGCCA-GGAGTGGGGCCGCTCG
1 GGGTCGGACCGGCAGGGA-TGGGGCCGCTCG
**** * *
926648 ATACCGG-CCCGCTGGGAATGGGGCCGCTCG
1 GGGTCGGACCGGCAGGG-ATGGGGCCGCTCG
* * *
926678 GGGCCGGACCGCCAGGAATGGGGCCGCTCG
1 GGGTCGGACCGGCAGGGATGGGGCCGCTCG
926708 ATACCGGCCC
Statistics
Matches: 155, Mismatches: 43, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
29 17 0.11
30 122 0.79
31 16 0.10
ACGTcount: A:0.11, C:0.30, G:0.48, T:0.12
Consensus pattern (30 bp):
GGGTCGGACCGGCAGGGATGGGGCCGCTCG
Found at i:926575 original size:60 final size:60
Alignment explanation
Indices: 926482--926738 Score: 415
Period size: 60 Copynumber: 4.3 Consensus size: 60
926472 CGGACGGGCA
* * * * *
926482 GGGATGGGGCCGCTCGGGGTCGGACTGGCAGGAGTGGGGCCGCCCGATATCGGTCCGCTG
1 GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
926542 GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
1 GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
926602 GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
1 GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
* * * *
926662 GGAATGGGGCCGCTCGGGGCCGGACCGCCAGGAATGGGGCCGCTCGATACCGGCCCGCTC
1 GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
* *
926722 GGGATCGGCCCGCTCGG
1 GGGATGGGGCCGCTCGG
926739 CACCGGCCCG
Statistics
Matches: 185, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 185 1.00
ACGTcount: A:0.11, C:0.32, G:0.46, T:0.12
Consensus pattern (60 bp):
GGGATGGGGCCGCTCGGGGTCGGACCGCCAGGAGTGGGGCCGCTCGATACCGGCCCGCTG
Found at i:926719 original size:15 final size:15
Alignment explanation
Indices: 926710--926777 Score: 82
Period size: 15 Copynumber: 4.5 Consensus size: 15
926700 GCCGCTCGAT
*
926710 ACCGGCCCGCTCGGG
1 ACCGGCCCGCTCGGC
*
926725 ATCGGCCCGCTCGGC
1 ACCGGCCCGCTCGGC
* *
926740 ACCGGCCCGCTGGGG
1 ACCGGCCCGCTCGGC
*
926755 ATCGGCCCGCTCGGC
1 ACCGGCCCGCTCGGC
*
926770 ATCGGCCC
1 ACCGGCCC
926778 ACTGGGGACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.07, C:0.46, G:0.37, T:0.10
Consensus pattern (15 bp):
ACCGGCCCGCTCGGC
Found at i:926735 original size:30 final size:30
Alignment explanation
Indices: 926516--926767 Score: 179
Period size: 30 Copynumber: 8.4 Consensus size: 30
926506 CTGGCAGGAG
* * * *
926516 TGGGGCCGCCCGATATCGGTCCGCTGGGGA
1 TGGGGCCGCTCGATACCGGCCCGCTCGGGA
**** * *
926546 TGGGGCCGCTCGGGGTCGGACCGC-CAGGA
1 TGGGGCCGCTCGATACCGGCCCGCTCGGGA
*
926575 GTGGGGCCGCTCGATACCGGCCCGCTGGGGA
1 -TGGGGCCGCTCGATACCGGCCCGCTCGGGA
**** * *
926606 TGGGGCCGCTCGGGGTCGGACCGC-CAGGA
1 TGGGGCCGCTCGATACCGGCCCGCTCGGGA
926635 GTGGGGCCGCTCGATACCGGCCCGCT-GGGAA
1 -TGGGGCCGCTCGATACCGGCCCGCTCGGG-A
*** * *
926666 TGGGGCCGCTCGGGGCCGGACCGC-CAGGAA
1 TGGGGCCGCTCGATACCGGCCCGCTC-GGGA
926696 TGGGGCCGCTCGATACCGGCCCGCTCGGGA
1 TGGGGCCGCTCGATACCGGCCCGCTCGGGA
* * ** *
926726 TCGGCCCGCTCGGCACCGGCCCGCTGGGGA
1 TGGGGCCGCTCGATACCGGCCCGCTCGGGA
* *
926756 TCGGCCCGCTCG
1 TGGGGCCGCTCG
926768 GCATCGGCCC
Statistics
Matches: 172, Mismatches: 42, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
29 6 0.03
30 159 0.92
31 7 0.04
ACGTcount: A:0.10, C:0.35, G:0.44, T:0.12
Consensus pattern (30 bp):
TGGGGCCGCTCGATACCGGCCCGCTCGGGA
Found at i:926750 original size:45 final size:45
Alignment explanation
Indices: 926701--926795 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
926691 AGGAATGGGG
* * * *
926701 CCGCTCGATACCGGCCCGCTCGGGATCGGCCCGCTCGGCACCGGC
1 CCGCTCGAGACCGGCCCGCTCGGCATCGGCCCACTCGGCACAGGC
* * * * *
926746 CCGCTGGGGATCGGCCCGCTCGGCATCGGCCCACTGGGGACAGGC
1 CCGCTCGAGACCGGCCCGCTCGGCATCGGCCCACTCGGCACAGGC
926791 CCGCT
1 CCGCT
926796 GAAATCCGAG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.09, C:0.43, G:0.36, T:0.12
Consensus pattern (45 bp):
CCGCTCGAGACCGGCCCGCTCGGCATCGGCCCACTCGGCACAGGC
Found at i:926765 original size:120 final size:120
Alignment explanation
Indices: 926510--926767 Score: 329
Period size: 120 Copynumber: 2.1 Consensus size: 120
926500 GTCGGACTGG
* * * * * * *
926510 CAGGAGTGGGGCCGCCCGATATCGGTCCGCTGGGGATGGGGCCGCTCGGGGTCGGACCGCCAGGA
1 CAGGAGTCGGCCCGCTCGATACCGGCCCGCTGGGAATGGGGCCGCTCGGGGCCGGACCGCCAGGA
* * * * ***
926575 GTGGGGCCGCTCGATACCGGCCCGCTGGGGATGGGGCCGCTCGGGGTCGGACCGC
66 ATGGGGCCGCTCGATACCGGCCCGCTCGGGATCGGCCCGCTCGGCACCGGACCGC
* *
926630 CAGGAGTGGGGCCGCTCGATACCGGCCCGCTGGGAATGGGGCCGCTCGGGGCCGGACCGCCAGGA
1 CAGGAGTCGGCCCGCTCGATACCGGCCCGCTGGGAATGGGGCCGCTCGGGGCCGGACCGCCAGGA
*
926695 ATGGGGCCGCTCGATACCGGCCCGCTCGGGATCGGCCCGCTCGGCACCGGCCCG-
66 ATGGGGCCGCTCGATACCGGCCCGCTCGGGATCGGCCCGCTCGGCACCGGACCGC
* *
926749 CTGGGGATCGGCCCGCTCG
1 CAGGAG-TCGGCCCGCTCG
926768 GCATCGGCCC
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
119 4 0.03
120 116 0.97
ACGTcount: A:0.10, C:0.34, G:0.44, T:0.12
Consensus pattern (120 bp):
CAGGAGTCGGCCCGCTCGATACCGGCCCGCTGGGAATGGGGCCGCTCGGGGCCGGACCGCCAGGA
ATGGGGCCGCTCGATACCGGCCCGCTCGGGATCGGCCCGCTCGGCACCGGACCGC
Found at i:926768 original size:30 final size:30
Alignment explanation
Indices: 926650--926795 Score: 132
Period size: 30 Copynumber: 4.9 Consensus size: 30
926640 GCCGCTCGAT
* * * *
926650 ACCGGCCCGCTGGGAATGGGGCCGCTCGGG
1 ACCGGCCCGCTGGGGATCGGCCCGCTCGGC
* * ** * * * **
926680 GCCGGACCGCCAGGAATGGGGCCGCTCGAT
1 ACCGGCCCGCTGGGGATCGGCCCGCTCGGC
*
926710 ACCGGCCCGCTCGGGATCGGCCCGCTCGGC
1 ACCGGCCCGCTGGGGATCGGCCCGCTCGGC
926740 ACCGGCCCGCTGGGGATCGGCCCGCTCGGC
1 ACCGGCCCGCTGGGGATCGGCCCGCTCGGC
* *
926770 ATCGGCCCACTGGGGA-CAGGCCCGCT
1 ACCGGCCCGCTGGGGATC-GGCCCGCT
926796 GAAATCCGAG
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
29 1 0.01
30 96 0.99
ACGTcount: A:0.11, C:0.39, G:0.40, T:0.10
Consensus pattern (30 bp):
ACCGGCCCGCTGGGGATCGGCCCGCTCGGC
Found at i:927343 original size:15 final size:15
Alignment explanation
Indices: 927325--927373 Score: 98
Period size: 15 Copynumber: 3.3 Consensus size: 15
927315 CGCGTGGGAT
927325 GCGGGATCGAACGAC
1 GCGGGATCGAACGAC
927340 GCGGGATCGAACGAC
1 GCGGGATCGAACGAC
927355 GCGGGATCGAACGAC
1 GCGGGATCGAACGAC
927370 GCGG
1 GCGG
927374 AGCCGCCGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.24, C:0.27, G:0.43, T:0.06
Consensus pattern (15 bp):
GCGGGATCGAACGAC
Found at i:931839 original size:27 final size:27
Alignment explanation
Indices: 931801--931863 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
931791 GCCTCCAAGA
* *
931801 AGGCCGAGGAGCAGGCTCCGGCCGCCG
1 AGGCCGAGGAGCAGGCGCCCGCCGCCG
931828 AGGCCGAGGAGCAGGCGCCCGCCGCCG
1 AGGCCGAGGAGCAGGCGCCCGCCGCCG
931855 AGGCCGAGG
1 AGGCCGAGG
931864 CCCCCGCTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.16, C:0.37, G:0.46, T:0.02
Consensus pattern (27 bp):
AGGCCGAGGAGCAGGCGCCCGCCGCCG
Found at i:931864 original size:21 final size:21
Alignment explanation
Indices: 931840--931881 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
931830 GCCGAGGAGC
* *
931840 AGGCGCCCGCCGCCGAGGCCG
1 AGGCCCCCGCCGCCGACGCCG
*
931861 AGGCCCCCGCTGCCGACGCCG
1 AGGCCCCCGCCGCCGACGCCG
931882 CTGCGGAGGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.50, G:0.38, T:0.02
Consensus pattern (21 bp):
AGGCCCCCGCCGCCGACGCCG
Found at i:963519 original size:24 final size:22
Alignment explanation
Indices: 963483--963526 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 22
963473 ACGGCCCAGC
963483 TATCAGCGTCCGCCGACGCCGCCG
1 TATCAGCGTCCG-C-ACGCCGCCG
963507 TATCAGCCG-CCGCACGCCGC
1 TATCAG-CGTCCGCACGCCGC
963527 TGCGCGTCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 9 0.47
25 2 0.11
ACGTcount: A:0.14, C:0.48, G:0.27, T:0.11
Consensus pattern (22 bp):
TATCAGCGTCCGCACGCCGCCG
Found at i:970603 original size:14 final size:15
Alignment explanation
Indices: 970584--970612 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
970574 GCGGTGAGGT
970584 CAGTCC-TCGCGCAG
1 CAGTCCGTCGCGCAG
970598 CAGTCCGTCGCGCAG
1 CAGTCCGTCGCGCAG
970613 ATGCCAGCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.14, C:0.41, G:0.31, T:0.14
Consensus pattern (15 bp):
CAGTCCGTCGCGCAG
Found at i:972641 original size:19 final size:19
Alignment explanation
Indices: 972609--972646 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
972599 GCGCTGACCG
*
972609 GCGCGGGGCTGGGGCTGAC
1 GCGCGGGGCTGGGGATGAC
972628 GCGCGGGCGC-GGGGATGAC
1 GCGCGGG-GCTGGGGATGAC
972647 AGGATGAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.08, C:0.26, G:0.58, T:0.08
Consensus pattern (19 bp):
GCGCGGGGCTGGGGATGAC
Found at i:974398 original size:42 final size:42
Alignment explanation
Indices: 974348--974479 Score: 147
Period size: 42 Copynumber: 3.1 Consensus size: 42
974338 CTCCGGGTGA
* * * * *
974348 CAACACGACCAACCCCGGCACCAACACGACGAATCCGGGCAG
1 CAACACGACGAATCCCGGCAGCAATACGACGAATCCGGGCAC
* * * * *
974390 CAATACGACGAATCCCGGCAGCAATACCACCAACCCCGGCAC
1 CAACACGACGAATCCCGGCAGCAATACGACGAATCCGGGCAC
* *
974432 CAACACGACGAATCCGGGCAGCAATACGACGAATCCGGGTAC
1 CAACACGACGAATCCCGGCAGCAATACGACGAATCCGGGCAC
*
974474 GAACAC
1 CAACAC
974480 CGTCGTCCCC
Statistics
Matches: 72, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.34, C:0.39, G:0.21, T:0.06
Consensus pattern (42 bp):
CAACACGACGAATCCCGGCAGCAATACGACGAATCCGGGCAC
Found at i:974451 original size:21 final size:21
Alignment explanation
Indices: 974348--974467 Score: 123
Period size: 21 Copynumber: 5.7 Consensus size: 21
974338 CTCCGGGTGA
* *
974348 CAACACGACCAACCCCGGCAC
1 CAACACGACGAATCCCGGCAC
* *
974369 CAACACGACGAATCCGGGCAG
1 CAACACGACGAATCCCGGCAC
* *
974390 CAATACGACGAATCCCGGCAG
1 CAACACGACGAATCCCGGCAC
* * * *
974411 CAATACCACCAACCCCGGCAC
1 CAACACGACGAATCCCGGCAC
* *
974432 CAACACGACGAATCCGGGCAG
1 CAACACGACGAATCCCGGCAC
*
974453 CAATACGACGAATCC
1 CAACACGACGAATCC
974468 GGGTACGAAC
Statistics
Matches: 82, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 82 1.00
ACGTcount: A:0.34, C:0.40, G:0.20, T:0.06
Consensus pattern (21 bp):
CAACACGACGAATCCCGGCAC
Found at i:974468 original size:21 final size:21
Alignment explanation
Indices: 974373--974470 Score: 133
Period size: 21 Copynumber: 4.7 Consensus size: 21
974363 CGGCACCAAC
974373 ACGACGAATCCGGGCAGCAAT
1 ACGACGAATCCGGGCAGCAAT
*
974394 ACGACGAATCCCGGCAGCAAT
1 ACGACGAATCCGGGCAGCAAT
* * * * * *
974415 ACCACCAACCCCGGCACCAAC
1 ACGACGAATCCGGGCAGCAAT
974436 ACGACGAATCCGGGCAGCAAT
1 ACGACGAATCCGGGCAGCAAT
974457 ACGACGAATCCGGG
1 ACGACGAATCCGGG
974471 TACGAACACC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 65 1.00
ACGTcount: A:0.33, C:0.36, G:0.24, T:0.07
Consensus pattern (21 bp):
ACGACGAATCCGGGCAGCAAT
Found at i:974502 original size:63 final size:63
Alignment explanation
Indices: 974348--974467 Score: 222
Period size: 63 Copynumber: 1.9 Consensus size: 63
974338 CTCCGGGTGA
*
974348 CAACACGACCAACCCCGGCACCAACACGACGAATCCGGGCAGCAATACGACGAATCCCGGCAG
1 CAACACCACCAACCCCGGCACCAACACGACGAATCCGGGCAGCAATACGACGAATCCCGGCAG
*
974411 CAATACCACCAACCCCGGCACCAACACGACGAATCCGGGCAGCAATACGACGAATCC
1 CAACACCACCAACCCCGGCACCAACACGACGAATCCGGGCAGCAATACGACGAATCC
974468 GGGTACGAAC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.34, C:0.40, G:0.20, T:0.06
Consensus pattern (63 bp):
CAACACCACCAACCCCGGCACCAACACGACGAATCCGGGCAGCAATACGACGAATCCCGGCAG
Found at i:975493 original size:15 final size:15
Alignment explanation
Indices: 975473--975506 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
975463 AGCCCTCGAC
*
975473 GAACAGGCCGAGCGT
1 GAACAGGCCGAACGT
*
975488 GAACAGGCTGAACGT
1 GAACAGGCCGAACGT
975503 GAAC
1 GAAC
975507 GAGCCGAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.24, G:0.35, T:0.09
Consensus pattern (15 bp):
GAACAGGCCGAACGT
Found at i:975529 original size:15 final size:15
Alignment explanation
Indices: 975509--975542 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
975499 ACGTGAACGA
* *
975509 GCCGAGTTCGAGCGG
1 GCCGAGCTCCAGCGG
975524 GCCGAGCTCCAGCGG
1 GCCGAGCTCCAGCGG
975539 GCCG
1 GCCG
975543 GCCGTGCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.44, T:0.09
Consensus pattern (15 bp):
GCCGAGCTCCAGCGG
Found at i:983332 original size:13 final size:13
Alignment explanation
Indices: 983314--983339 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
983304 CTGGCCGCGG
983314 CCGGAAGGTGAAC
1 CCGGAAGGTGAAC
983327 CCGGAAGGTGAAC
1 CCGGAAGGTGAAC
983340 GAGGACGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.38, T:0.08
Consensus pattern (13 bp):
CCGGAAGGTGAAC
Found at i:987985 original size:15 final size:15
Alignment explanation
Indices: 987965--987994 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
987955 GACGGACACC
987965 GGCAGCCGTGGTGCG
1 GGCAGCCGTGGTGCG
987980 GGCAGCCGTGGTGCG
1 GGCAGCCGTGGTGCG
987995 ACCGTCGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.27, G:0.53, T:0.13
Consensus pattern (15 bp):
GGCAGCCGTGGTGCG
Found at i:995102 original size:18 final size:18
Alignment explanation
Indices: 995057--995103 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
995047 CCCGGCGGAA
*
995057 CCACCGAGCCCACGCAGC
1 CCACCGAGCCGACGCAGC
* *
995075 CCGCCCAGCCGACGCAGC
1 CCACCGAGCCGACGCAGC
995093 CCACCGAGCCG
1 CCACCGAGCCG
995104 GTCGAGCCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.55, G:0.26, T:0.00
Consensus pattern (18 bp):
CCACCGAGCCGACGCAGC
Found at i:1003949 original size:18 final size:18
Alignment explanation
Indices: 1003923--1003957 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1003913 GACGCTGCCC
*
1003923 GGGGCGCAGGCTCCGCGT
1 GGGGCGCAGGCGCCGCGT
*
1003941 GGGGGGCAGGCGCCGCG
1 GGGGCGCAGGCGCCGCG
1003958 CCCGGCCATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.31, G:0.57, T:0.06
Consensus pattern (18 bp):
GGGGCGCAGGCGCCGCGT
Found at i:1023038 original size:18 final size:18
Alignment explanation
Indices: 1023002--1023039 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1022992 CATCTGCCGA
*
1023002 TGGTGCTGGTGGGGCTGG
1 TGGTGCTGGTGCGGCTGG
1023020 TGGTGCTGGTCGCGG-TGG
1 TGGTGCTGGT-GCGGCTGG
1023038 TG
1 TG
1023040 TTCGTGGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.00, C:0.13, G:0.58, T:0.29
Consensus pattern (18 bp):
TGGTGCTGGTGCGGCTGG
Found at i:1032645 original size:78 final size:80
Alignment explanation
Indices: 1032439--1032649 Score: 390
Period size: 80 Copynumber: 2.7 Consensus size: 80
1032429 CCGGCACGGC
*
1032439 GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCTGTGTTGGAT
1 GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCTGTATTGGAT
*
1032504 TTCGCCTGAGCGGGG
66 GTCGCCTGAGCGGGG
1032519 GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCTGTATTGGAT
1 GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCTGTATTGGAT
1032584 GT-GCCTGAGC-GGG
66 GTCGCCTGAGCGGGG
1032597 GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAG
1 GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAG
1032650 ACGGCGCGCA
Statistics
Matches: 129, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
78 56 0.43
79 8 0.06
80 65 0.50
ACGTcount: A:0.07, C:0.36, G:0.39, T:0.18
Consensus pattern (80 bp):
GGCGGCCTGCGTGGTGACGCTGCGCTGCCGCCTCCGGCCGCTGACCCGCTCAGGCTGTATTGGAT
GTCGCCTGAGCGGGG
Found at i:1045375 original size:18 final size:18
Alignment explanation
Indices: 1045352--1045394 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1045342 GCCAGGTGGA
1045352 GTGGTCGGTGTGGGCAGC
1 GTGGTCGGTGTGGGCAGC
**
1045370 GTGGTCTTTGTGGGCAGC
1 GTGGTCGGTGTGGGCAGC
1045388 GTGGTCG
1 GTGGTCG
1045395 ACGTGGGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.16, G:0.51, T:0.28
Consensus pattern (18 bp):
GTGGTCGGTGTGGGCAGC
Found at i:1045400 original size:18 final size:18
Alignment explanation
Indices: 1045361--1045419 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
1045351 AGTGGTCGGT
***
1045361 GTGGGCAGCGTGGTCTTT
1 GTGGGCAGCGTGGTCGAC
1045379 GTGGGCAGCGTGGTCGAC
1 GTGGGCAGCGTGGTCGAC
** *
1045397 GTGGGTGGTGTGGTCGAC
1 GTGGGCAGCGTGGTCGAC
1045415 GTGGG
1 GTGGG
1045420 TGGTGTGGTC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.07, C:0.15, G:0.53, T:0.25
Consensus pattern (18 bp):
GTGGGCAGCGTGGTCGAC
Found at i:1045420 original size:18 final size:18
Alignment explanation
Indices: 1045388--1045430 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
1045378 TGTGGGCAGC
1045388 GTGGTCGACGTGGGTGGT
1 GTGGTCGACGTGGGTGGT
1045406 GTGGTCGACGTGGGTGGT
1 GTGGTCGACGTGGGTGGT
1045424 GTGGTCG
1 GTGGTCG
1045431 TGGGCGGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.05, C:0.12, G:0.56, T:0.28
Consensus pattern (18 bp):
GTGGTCGACGTGGGTGGT
Found at i:1045432 original size:15 final size:16
Alignment explanation
Indices: 1045395--1045434 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
1045385 AGCGTGGTCG
1045395 ACGTGGGTGGTGTGGT
1 ACGTGGGTGGTGTGGT
1045411 CGACGTGGGTGGTGTGGT
1 --ACGTGGGTGGTGTGGT
1045429 -CGTGGG
1 ACGTGGG
1045435 CGGGGTGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.27
18 16 0.73
ACGTcount: A:0.05, C:0.10, G:0.57, T:0.28
Consensus pattern (16 bp):
ACGTGGGTGGTGTGGT
Found at i:1059563 original size:23 final size:23
Alignment explanation
Indices: 1059533--1059600 Score: 109
Period size: 23 Copynumber: 3.0 Consensus size: 23
1059523 ATCGTGGCCG
1059533 GTGTCAGAGCCTGCGGCAGTAAC
1 GTGTCAGAGCCTGCGGCAGTAAC
* *
1059556 GTGTCAGAGCCTGCGGCAGCAAT
1 GTGTCAGAGCCTGCGGCAGTAAC
*
1059579 GTCTCAGAGCCTGCGGCAGTAA
1 GTGTCAGAGCCTGCGGCAGTAA
1059601 TCCGCCAGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.22, C:0.26, G:0.34, T:0.18
Consensus pattern (23 bp):
GTGTCAGAGCCTGCGGCAGTAAC
Found at i:1062876 original size:18 final size:17
Alignment explanation
Indices: 1062852--1062902 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
1062842 CGTCCCGCGA
1062852 CGGCGCGCGGGCGGACG
1 CGGCGCGCGGGCGGACG
*
1062869 CGGGCGCGCGGGTGGACG
1 C-GGCGCGCGGGCGGACG
*
1062887 CGGCGGCGCGCGCGGA
1 CGGC-GCGCGGGCGGA
1062903 TGCCGCGATC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.06, C:0.33, G:0.59, T:0.02
Consensus pattern (17 bp):
CGGCGCGCGGGCGGACG
Found at i:1068023 original size:15 final size:14
Alignment explanation
Indices: 1068001--1068040 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 14
1067991 ACCGCGCAGC
1068001 CCGGGCAGGGCTCG
1 CCGGGCAGGGCTCG
1068015 CCGGAGCAGGGCTCG
1 CCGG-GCAGGGCTCG
1068030 CCGGGTCAGGG
1 CCGGG-CAGGG
1068041 AGACGAGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.10, C:0.33, G:0.50, T:0.07
Consensus pattern (14 bp):
CCGGGCAGGGCTCG
Found at i:1069044 original size:21 final size:21
Alignment explanation
Indices: 1069020--1069123 Score: 82
Period size: 21 Copynumber: 5.0 Consensus size: 21
1069010 CGGGTCGCAA
*
1069020 TTCGGTTCACCGGTAGGCGAT
1 TTCGGTCCACCGGTAGGCGAT
* * * *
1069041 TTCGGCCCCCCGGTCGGCGAC
1 TTCGGTCCACCGGTAGGCGAT
* *
1069062 TTCGGTCCTCCGGTGGGCGAT
1 TTCGGTCCACCGGTAGGCGAT
* * * * *
1069083 TTCGGGCCGCCGGTCGGTGAC
1 TTCGGTCCACCGGTAGGCGAT
* *
1069104 TTCGGTCCTCCGGTCGGCGA
1 TTCGGTCCACCGGTAGGCGA
1069124 GCCCCCGACG
Statistics
Matches: 66, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 66 1.00
ACGTcount: A:0.07, C:0.34, G:0.37, T:0.23
Consensus pattern (21 bp):
TTCGGTCCACCGGTAGGCGAT
Found at i:1069075 original size:42 final size:42
Alignment explanation
Indices: 1069029--1069123 Score: 145
Period size: 42 Copynumber: 2.3 Consensus size: 42
1069019 ATTCGGTTCA
1069029 CCGGTAGGCGATTTCGGCCCCCCGGTCGGCGACTTCGGTCCT
1 CCGGTAGGCGATTTCGGCCCCCCGGTCGGCGACTTCGGTCCT
* * * *
1069071 CCGGTGGGCGATTTCGGGCCGCCGGTCGGTGACTTCGGTCCT
1 CCGGTAGGCGATTTCGGCCCCCCGGTCGGCGACTTCGGTCCT
*
1069113 CCGGTCGGCGA
1 CCGGTAGGCGA
1069124 GCCCCCGACG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.06, C:0.35, G:0.38, T:0.21
Consensus pattern (42 bp):
CCGGTAGGCGATTTCGGCCCCCCGGTCGGCGACTTCGGTCCT
Found at i:1071464 original size:79 final size:79
Alignment explanation
Indices: 1071347--1071758 Score: 752
Period size: 79 Copynumber: 5.2 Consensus size: 79
1071337 CACGCGGCGG
* *
1071347 GCTGACCCGGCTCAGGCTGTATCTATCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
1 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
1071412 TGCCGCCTCCGGGC
66 TGCCGCCTCCGGGC
*
1071426 GCGGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
1 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
*
1071491 TGCCGTCTCCGGGC
66 TGCCGCCTCCGGGC
*
1071505 GCTGACCCGGCTCAGGCGGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
1 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
*
1071570 TGCCGCCTGCGGGC
66 TGCCGCCTCCGGGC
1071584 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
1 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
*
1071649 TGCCGCCTGCGGGC
66 TGCCGCCTCCGGGC
1071663 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
1 GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
*
1071728 TGCCGTCTCCGGGC
66 TGCCGCCTCCGGGC
1071742 GCTGACCCGGCTCAGGC
1 GCTGACCCGGCTCAGGC
1071759 GGTCCAGTTG
Statistics
Matches: 322, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 322 1.00
ACGTcount: A:0.05, C:0.35, G:0.38, T:0.22
Consensus pattern (79 bp):
GCTGACCCGGCTCAGGCTGTGTCTGTCGTGCCTGTGCCGGGGCGCCCTTCGTGGTGATGCTGCGC
TGCCGCCTCCGGGC
Found at i:1093144 original size:24 final size:24
Alignment explanation
Indices: 1093116--1093195 Score: 126
Period size: 24 Copynumber: 3.4 Consensus size: 24
1093106 GGCCGGGTAC
1093116 CGCCGGGTGCTGTCGCGGGTGGTT
1 CGCCGGGTGCTGTCGCGGGTGGTT
* *
1093140 CGCCGGGTGCTGCCGCGGGCGGTT
1 CGCCGGGTGCTGTCGCGGGTGGTT
*
1093164 CGCCGGGTGCTGTAGC-GGTGGTT
1 CGCCGGGTGCTGTCGCGGGTGGTT
1093187 CGCCGGGTG
1 CGCCGGGTG
1093196 TGGTCGCCGC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 15 0.29
24 36 0.71
ACGTcount: A:0.01, C:0.28, G:0.50, T:0.21
Consensus pattern (24 bp):
CGCCGGGTGCTGTCGCGGGTGGTT
Found at i:1093439 original size:30 final size:30
Alignment explanation
Indices: 1093399--1093457 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
1093389 GCCGTCGGCT
* * *
1093399 CCCGCGCCGGATCCATTGCGGCACGACCCA
1 CCCGCCCCGGAACCATTGCGGCACAACCCA
*
1093429 CCCGCCCCGGAACCCTTGCGGCACAACCC
1 CCCGCCCCGGAACCATTGCGGCACAACCC
1093458 CCCTGCCGCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.17, C:0.51, G:0.24, T:0.08
Consensus pattern (30 bp):
CCCGCCCCGGAACCATTGCGGCACAACCCA
Found at i:1093496 original size:60 final size:60
Alignment explanation
Indices: 1093425--1093550 Score: 144
Period size: 60 Copynumber: 2.1 Consensus size: 60
1093415 TGCGGCACGA
** *
1093425 CCCACCCGCCCCGGAACCCTTGCGGCACAACCCCCCTGCCGCGGACCCGGCGCGGGGCAC
1 CCCACCCGCCCCGGAACCCGCGCGGCACAACCCACCTGCCGCGGACCCGGCGCGGGGCAC
* * ** ** * * *
1093485 CCCACCTGCCCCGGATCGGGCGCGGGGCATCCCACCTGCCGCGGACCGGGTGCGGGGCAC
1 CCCACCCGCCCCGGAACCCGCGCGGCACAACCCACCTGCCGCGGACCCGGCGCGGGGCAC
1093545 CCCACC
1 CCCACC
1093551 GGCGTCGATT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.12, C:0.50, G:0.32, T:0.06
Consensus pattern (60 bp):
CCCACCCGCCCCGGAACCCGCGCGGCACAACCCACCTGCCGCGGACCCGGCGCGGGGCAC
Found at i:1093507 original size:30 final size:30
Alignment explanation
Indices: 1093454--1093550 Score: 142
Period size: 30 Copynumber: 3.3 Consensus size: 30
1093444 TTGCGGCACA
*
1093454 ACCCC-CCTGCCGCGGACCCGGCGCGGGGC
1 ACCCCACCTGCCGCGGACCGGGCGCGGGGC
* *
1093483 ACCCCACCTGCCCCGGATCGGGCGCGGGGC
1 ACCCCACCTGCCGCGGACCGGGCGCGGGGC
* *
1093513 ATCCCACCTGCCGCGGACCGGGTGCGGGGC
1 ACCCCACCTGCCGCGGACCGGGCGCGGGGC
1093543 ACCCCACC
1 ACCCCACC
1093551 GGCGTCGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
29 5 0.08
30 54 0.92
ACGTcount: A:0.10, C:0.48, G:0.35, T:0.06
Consensus pattern (30 bp):
ACCCCACCTGCCGCGGACCGGGCGCGGGGC
Found at i:1119894 original size:18 final size:19
Alignment explanation
Indices: 1119871--1119923 Score: 74
Period size: 18 Copynumber: 2.9 Consensus size: 19
1119861 CGGGGCCCGT
*
1119871 GTGCTCGGCGGCGGTG-CG
1 GTGCTCGGCGGCGGTGTAG
*
1119889 GTGCTCGGCGGCGG-GTAT
1 GTGCTCGGCGGCGGTGTAG
1119907 GTGCTCGGCGGCGGTGT
1 GTGCTCGGCGGCGGTGT
1119924 GCTCGGAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 1 0.03
18 28 0.90
19 2 0.06
ACGTcount: A:0.02, C:0.25, G:0.53, T:0.21
Consensus pattern (19 bp):
GTGCTCGGCGGCGGTGTAG
Found at i:1119924 original size:15 final size:15
Alignment explanation
Indices: 1119869--1119929 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 15
1119859 GCCGGGGCCC
1119869 GTGTGCTCGGCGGCG
1 GTGTGCTCGGCGGCG
1119884 GTGCGGTGCTCGGCGGCGG
1 GT---GTGCTCGGCGGC-G
1119903 GTATGTGCTCGGCGGCG
1 G--TGTGCTCGGCGGCG
1119920 GTGTGCTCGG
1 GTGTGCTCGG
1119930 AAGCGGTGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
15 11 0.28
17 2 0.05
18 24 0.60
19 2 0.05
21 1 0.03
ACGTcount: A:0.02, C:0.25, G:0.52, T:0.21
Consensus pattern (15 bp):
GTGTGCTCGGCGGCG
Found at i:1125210 original size:6 final size:6
Alignment explanation
Indices: 1125148--1125271 Score: 50
Period size: 6 Copynumber: 20.7 Consensus size: 6
1125138 CGCCGAAAAC
* * * * * * * *
1125148 GCCGGT GCGGGT GGCGGT GCGGGC GCCGAT GCCAGT GCCAGT GCCAGT
1 GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT
** * * * * * * *
1125196 TTCGAT GCCGGT GCCGAT GCCGAT GCCGAT GCCGGT GGCGGT GGCGGC
1 GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT GCCGGT
** * * *
1125244 GGTGGT GCTGGT GCTGGT GCTGGT GCCG
1 GCCGGT GCCGGT GCCGGT GCCGGT GCCG
1125272 ACTCCGACGC
Statistics
Matches: 92, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 92 1.00
ACGTcount: A:0.06, C:0.27, G:0.48, T:0.19
Consensus pattern (6 bp):
GCCGGT
Found at i:1125213 original size:12 final size:12
Alignment explanation
Indices: 1125198--1125232 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
1125188 GTGCCAGTTT
1125198 CGATGCCGGTGC
1 CGATGCCGGTGC
*
1125210 CGATGCCGATGC
1 CGATGCCGGTGC
1125222 CGATGCCGGTG
1 CGATGCCGGTG
1125233 GCGGTGGCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.11, C:0.31, G:0.40, T:0.17
Consensus pattern (12 bp):
CGATGCCGGTGC
Found at i:1126667 original size:20 final size:19
Alignment explanation
Indices: 1126642--1126690 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
1126632 TACGACGCCA
1126642 CGGGCGGGATGGCGGCGGCG
1 CGGGCGGG-TGGCGGCGGCG
* *
1126662 CGGGCGTGGTGGCTGCTGCG
1 CGGGCG-GGTGGCGGCGGCG
1126682 CTGGGCGGG
1 C-GGGCGGG
1126691 GCTGGCCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.02, C:0.24, G:0.61, T:0.12
Consensus pattern (19 bp):
CGGGCGGGTGGCGGCGGCG
Found at i:1127830 original size:15 final size:16
Alignment explanation
Indices: 1127810--1127839 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1127800 CGCGGGCTCG
1127810 ACCTGCCC-CACCCGC
1 ACCTGCCCGCACCCGC
1127825 ACCTGCCCGCACCCG
1 ACCTGCCCGCACCCG
1127840 GCGACCGCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.13, C:0.63, G:0.17, T:0.07
Consensus pattern (16 bp):
ACCTGCCCGCACCCGC
Found at i:1128093 original size:15 final size:15
Alignment explanation
Indices: 1128074--1128109 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
1128064 GACATCCGGT
1128074 GGCCGAAAAGGCGTC
1 GGCCGAAAAGGCGTC
* *
1128089 TGCCGAAGAGGCGTC
1 GGCCGAAAAGGCGTC
1128104 GGCCGA
1 GGCCGA
1128110 CGGCGCGTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.42, T:0.08
Consensus pattern (15 bp):
GGCCGAAAAGGCGTC
Found at i:1131935 original size:15 final size:15
Alignment explanation
Indices: 1131915--1131944 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1131905 GCTGTCCTGG
*
1131915 CCCGTCGCCGAGGAC
1 CCCGTCGACGAGGAC
1131930 CCCGTCGACGAGGAC
1 CCCGTCGACGAGGAC
1131945 GACGACCGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.43, G:0.33, T:0.07
Consensus pattern (15 bp):
CCCGTCGACGAGGAC
Found at i:1148764 original size:18 final size:17
Alignment explanation
Indices: 1148743--1148776 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1148733 TCGCCGCGCT
1148743 CGACGAGCTGGAGCGCGA
1 CGACGAGCTGG-GCGCGA
*
1148761 CGACGAGGTGGGCGCG
1 CGACGAGCTGGGCGCG
1148777 GTCGTGATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.26, G:0.50, T:0.06
Consensus pattern (17 bp):
CGACGAGCTGGGCGCGA
Found at i:1161964 original size:18 final size:17
Alignment explanation
Indices: 1161943--1161994 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
1161933 GGTGAAGGAC
1161943 GCCGCGCCGACCGCGCAG
1 GCCGCGCCG-CCGCGCAG
1161961 GCCGCCGCC-CCGACGCAG
1 GCCG-CGCCGCCG-CGCAG
*
1161979 GCCCCGGCCGCCGCGC
1 GCCGC-GCCGCCGCGC
1161995 CCGAGCGGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 4 0.14
18 18 0.62
19 7 0.24
ACGTcount: A:0.08, C:0.56, G:0.37, T:0.00
Consensus pattern (17 bp):
GCCGCGCCGCCGCGCAG
Done.