CUPlot Genus Chooser

CUPlot can help identification of protein-coding gene by using the codon usage of organisms you interested. You can directory call the CUPlot with genus by the following format:

http://www.nih.go.jp/~jun/cuplot/cuplot.cgi?genus=Genus_name

Known bugs: This version only uses the standard genetic code (transl_table=1 or 11).

Usage stats.

Please choose a genus you interested:

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Initial: Genus (number of codons appeared in the CUTG database)
A: Abiotrophia (355); Acaryochloris (1,921); Acetivibrio (5,333); Acetobacter (25,089); Acetobacterium (3,812); Acetomicrobium (807); Acholeplasma (7,846); Achromobacter (42,333); Acidaminococcus (3,467); Acidianus (22,952); Acidiphilium (7,718); Acidithiobacillus (49,411); Acidobacterium (406); Acidocella (1,059); Acidothermus (563); Acidovorax (9,297); Acinetobacter (1,266,048); Actinobacillus (215,587); Actinomadura (10,581); Actinomyces (16,546); Actinoplanes (69,871); Actinopolyspora (566); Actinosynnema (28,481); Acyrthosiphon (2,106); Aerococcus (375); Aeromicrobium (21,608); Aeromonas (235,056); Aeropyrum (648,524); Afipia (13,755); Agrobacterium (3,816,485); Agromyces (1,965); Alcaligenaceae (370); Alcaligenes (49,713); Alcanivorax (5,568); Alder (1,379); Alicyclobacillus (14,094); Allochromatium (17,477); Alteromonas (19,102); Alvinella (20,679); Aminobacter (3,905); Aminomonas (425); Amoeba (3,051); Amphibacillus (699); Amycolatopsis (152,520); Anabaena (144,343); Anaerobiospirillum (533); Anaerobranca (1,732); Anaerocellum (3,909); Anaeroplasma (252); Anaplasma (155,439); Ancylobacter (1,108); Aneurinibacillus (16,723); Angiococcus (21,883); Antarctic (1,486); Aphanizomenon (2,479); Aphanothece (2,856); Apricot (130); Aquaspirillum (330); Aquifex (509,066); Arcanobacterium (11,996); Archaeoglobus (670,715); Arthrobacter (188,213); Aster (25,693); Azoarcus (71,249); Azomonas (460); Azorhizobium (23,296); Azorhizophilus (247); Azospirillum (101,332); Azotobacter (97,273)
B: Bacillus (17,897,098); Bacteroides (3,640,875); Bacteroidetes (940); Bartonella (932,249); Bdellovibrio (1,183,780); Beet (3,326); Bergeyella (1,558); Bifidobacterium (701,715); Bilophila (1,758); Blastochloris (2,311); Blastomonas (337); Blueberry (130); Bordetella (4,316,518); Borrelia (1,129,847); Bosea (9,595); Brachyspira (19,078); Bradyrhizobium (2,934,878); Brevibacillus (62,589); Brevibacterium (26,656); Brevundimonas (2,303); Brochothrix (352); Brucella (2,019,896); Buchnera (656,614); Burkholderia (3,825,324); Buttiauxella (1,747); Butyrivibrio (21,957)
C: Caedibacter (14,800); Caldibacillus (2,926); Caldicellulosiruptor (28,762); Caldimonas (496); Caldococcus (430); Calothrix (4,458); Campylobacter (858,777); Candidatus (246,790); Capnocytophaga (609); Carboxydothermus (2,041); Carnobacterium (12,799); Caulobacter (1,277,734); Cellulomonas (15,801); Cellulophaga (899); Cellulosimicrobium (1,352); Cellvibrio (20,492); Cenarchaeum (16,015); Cenibacterium (1,311); Cherry (369); Chlamydia (777,375); Chlamydophila (1,875,134); Chlorante-Aster (433); Chlorobaculum (18,445); Chlorobium (641,338); Chloroflexus (20,163); Chlorogloeopsis (1,457); Chromobacterium (1,410,462); Chromohalobacter (1,170); Chrysanthemum (130); Chryseobacterium (17,215); Chrysiogenes (847); Citrobacter (94,944); Clavibacter (3,244); Clostridiaceae (1,234); Clostridium (3,397,643); Clover (755); Cobetia (375); Collimonas (19,781); Colwellia (6,268); Comamonas (59,614); Corynebacterium (3,929,108); Coxiella (660,719); Curtobacterium (542); Cyanothece (9,908); Cycloclasticus (4,211); Cylindrospermum (1,000); Cytophaga (7,253)
D: Dactylococcopsis (352); Dactylosporangium (273); Dechloromonas (1,206); Defluvibacter (1,350); Dehalobacter (2,322); Dehalococcoides (2,396); Deinococcus (974,688); Delftia (48,030); Dermatophilus (1,801); Desulfitobacterium (33,445); Desulfobacter (1,569); Desulfobacula (2,321); Desulfobulbus (886); Desulfomicrobium (1,932); Desulfomonile (467); Desulfonispora (585); Desulfotalea (1,040,669); Desulfotomaculum (1,414); Desulfovibrio (1,130,254); Desulfurococcus (6,179); Desulfuromonas (876); Dichelobacter (30,596); Dictyoglomus (4,066); Doohwaniella (634)
E: EDTA-degrading (4,812); Ectothiorhodospira (3,366); Edwardsiella (39,873); Ehrlichia (96,110); Eikenella (4,386); Elm (251); Empedobacter (466); Ensifer (736); Enterobacter (120,344); Enterobacteriaceae (2,267); Enterococcus (1,343,324); Erwinia (1,644,083); Erysipelothrix (9,403); Erythrobacter (3,808); Escherichia (10,628,679); Eubacterium (25,418); Ewingella (307); Exiguobacterium (3,069)
F: Fervidobacterium (6,495); Fibrobacter (14,754); Finegoldia (3,256); Fischerella (8,569); Flavescence (4,140); Flavobacterium (28,311); Fluoribacter (2,013); Francisella (50,487); Frankia (31,489); Frateuria (6,599); Fremyella (40,146); Fritschea (2,308); Fusobacterium (671,296)
G: Gardnerella (1,822); Gemella (2,407); Gemmata (3,564); Geobacillus (299,693); Geobacter (1,146,090); Gloeobacter (1,389,180); Gloeothece (1,017); Gluconacetobacter (70,766); Gluconobacter (15,786); Gordonia (42,711); Gram-negative (6,383); Granulicatella (2,351); Grey (130); Grimontia (483)
H: Haemophilus (1,346,638); Hafnia (10,013); Halanaerobium (909); Haloarcula (23,805); Halobacillus (1,145); Halobacterium (795,945); Halococcus (985); Haloferax (52,081); Halomonas (17,373); Halorhodospira (801); Halorubrum (3,934); Halothermothrix (516); Halothiobacillus (3,481); Helicobacter (2,216,191); Heliobacillus (11,359); Heliobacterium (870); Hemp (376); Herbaspirillum (4,932); Herpetosiphon (6,075); Histophilus (18,360); Holospora (1,236); Hydrangea (130); Hydrogenobacter (7,583); Hydrogenophaga (2,880); Hydrogenophilus (4,535); Hydrogenovibrio (8,766); Hyphomicrobium (12,270); Hyphomonas (288)
I: Ideonella (2,405); Ilyobacter (2,200); IncJ (5,245); IncL/M (2,426); IncN (15,317); IncQ (665); IncQ-like (453); IncT (1,914); IncW (298); Insertion (8,846); Ipomoea (130)
J: Janthinobacterium (6,073); Jujube (369)
K: Ketogulonicigenium (169); Kibdelosporangium (918); Kinetoplastibacterium (399); Kingella (592); Kitasatospora (12,336); Klebsiella (397,889); Kluyvera (11,299); Kocuria (787); Kryptophanaron (358); Kurthia (3,664); Kytococcus (581)
L: Lactobacillus (1,900,109); Lactococcus (1,067,778); Lamprocystis (1,327); Laribacter (2,734); Lawsonia (1,371); Leafhopper-borne (130); Lechevalieria (32,512); Leclercia (142); Legionella (3,288,220); Leifsonia (612,139); Leptolyngbya (14,570); Leptospira (2,518,731); Leptospirillum (9,014); Leptothrix (4,667); Leuconostoc (44,807); Listeria (3,129,643); Listonella (69,576); Loofah (1,902); Lyngbya (51,084); Lysobacter (14,826)
M: Magnetospirillum (24,985); Maize (130); Malonomonas (3,536); Mannheimia (774,980); Marinibacillus (217); Marinobacter (579); Marinococcus (2,916); Marinomonas (2,102); Marinosulfonomonas (2,020); Mastigocladus (3,351); Matsuebacter (392); Megaplasmid (368); Megasphaera (5,958); Meiothermus (3,261); Melittangium (15,321); Mesoplasma (246,003); Mesorhizobium (2,317,381); Metallosphaera (3,186); Methanobacterium (3,832); Methanobrevibacter (2,474); Methanocaldococcus (504,804); Methanococcoides (2,434); Methanococcus (550,110); Methanohalophilus (517); Methanolobus (1,062); Methanopyrus (518,058); Methanosaeta (1,801); Methanosarcina (2,529,535); Methanosphaera (2,702); Methanothermobacter (599,908); Methanothermococcus (8,239); Methanothermus (8,311); Methanotorris (842); Methylobacillus (20,796); Methylobacter (425); Methylobacterium (64,651); Methylococcus (1,004,831); Methylocystis (8,994); Methylomicrobium (2,253); Methylomonas (6,551); Methylophaga (1,198); Methylophilus (7,816); Methylorhabdus (289); Methylosinus (5,722); Methylosulfonomonas (1,474); Methylovorus (4,891); Microbacterium (3,161); Microbispora (1,354); Microbulbifer (5,993); Micrococcus (29,595); Microcystis (61,139); Microlunatus (267); Micromonospora (103,020); Microscilla (24,233); Mitsuokella (1,280); Moorella (12,583); Moraxella (74,771); Morganella (10,157); Moritella (23,997); Mycobacterium (6,999,272); Mycoplana (342); Mycoplasma (2,623,145); Myroides (1,829); Myxobacter (652); Myxococcus (202,129)
N: Nannocystis (515); Nanoarchaeum (152,109); Natrialba (2,072); Natronobacterium (571); Natronococcus (746); Natronomonas (3,792); Nectarine (369); Neisseria (1,825,176); Neorickettsia (7,622); Nitrobacter (7,646); Nitrosococcus (2,830); Nitrosomonas (817,014); Nitrosospira (10,534); Nitrosovibrio (275); Nocardia (1,898,874); Nocardioides (9,998); Nocardiopsis (1,357); Nodularia (19,815); Nonomuraea (31,754); Nostoc (2,080,488); Novosphingobium (58,546)
O: Obesumbacterium (890); Oceanobacillus (1,022,414); Ochrobactrum (9,121); Oenococcus (20,348); Oleispira (1,628); Oleomonas (2,598); Oligella (918); Oligotropha (37,256); Onion (212,913); Orientia (12,788); Ornithobacterium (4,202); Oscillatoria (2,384); Oxalobacter (1,417)
P: Paenibacillus (50,504); Pantoea (85,640); Parachlamydia (663,271); Paracoccus (90,223); Parascardovia (538); Pasteurella (765,012); Pasteuria (573); Paucimonas (4,041); Paulownia (514); Peach (907); Peanut (7,313); Pectinatus (471); Pectobacterium (74,923); Pediococcus (30,504); Pedobacter (3,026); Pelobacter (6,522); Peptoniphilus (938); Peptostreptococcus (394); Petrotoga (243); Phaeospirillum (1,691); Phormidium (4,394); Photobacterium (1,798,458); Photorhabdus (1,688,830); Phytoplasma (3,590); Picrophilus (472,890); Pigmentiphaga (1,639); Pimelobacter (5,057); Piscirickettsia (1,104); Planctomyces (496); Planktothrix (21,954); Planobispora (899); Planococcus (678); Planomicrobium (2,460); Plantago (130); Plasmid (332,001); Plesiomonas (13,430); Polaribacter (2,671); Polyangium (77,337); Porphyromonas (745,503); Potato (747); Prauserella (910); Prevotella (34,517); Primrose (130); Prochlorococcus (1,687,252); Prochloron (3,485); Prochlorothrix (6,743); Promicromonospora (357); Propionibacterium (795,118); Propionigenium (4,581); Prosthecobacter (474); Prosthecochloris (7,823); Proteus (126,269); Providencia (38,700); Pseudaminobacter (956); Pseudanabaena (4,630); Pseudoalteromonas (31,509); Pseudogluconobacter (609); Pseudomonas (7,991,253); Pseudonocardia (4,658); Psychrobacter (4,993); Psychromonas (1,032); Pyrobaculum (672,314); Pyrococcus (1,685,425); Pyrodictium (3,663)
Q
R: Rahnella (2,934); Ralstonia (1,634,117); Raoultella (8,128); Rarobacter (526); Rathayibacter (1,710); Renibacterium (10,699); Rhizobiales (891); Rhizobium (699,057); Rhodanobacter (157); Rhodobacter (338,405); Rhodoblastus (1,470); Rhodococcus (377,381); Rhodoferax (1,403); Rhodopirellula (2,314,003); Rhodopseudomonas (1,607,906); Rhodospirillum (58,779); Rhodothalassium (126); Rhodothermus (16,001); Rhodovulum (12,837); Rhopalosiphum (549); Rickettsia (1,030,844); Riemerella (12,806); Roseateles (2,067); Roseburia (934); Roseiflexus (1,367); Roseobacter (2,696); Roseospirillum (1,100); Roseovarius (1,240); Rubrivivax (32,261); Rubus (1,755); Ruegeria (66,859); Ruminobacter (550); Ruminococcus (43,763)
S: Saccharopolyspora (112,333); Saccharothrix (20,674); Sagittula (1,562); Salinivibrio (391); Salmonella (5,263,922); Saprospira (500); Sarcina (553); Scardovia (539); Schlegelella (493); Scytonema (994); Sedimentibacter (481); Selenomonas (13,952); Serratia (228,957); Shewanella (1,488,189); Shigella (2,802,158); Silicibacter (1,531); Simkania (144); Sinorhizobium (2,090,646); Sitobion (549); Size (986); Sodalis (17,811); Solemya (1,655); Sphaerotilus (1,003); Sphingobacterium (384); Sphingobium (14,877); Sphingomonas (124,761); Sphingopyxis (5,408); Spirochaeta (2,531); Spiroplasma (49,985); Spirulina (9,965); Sporosarcina (13,155); Staphylococcus (5,576,009); Staphylothermus (3,705); Starkeya (3,722); Stenotrophomonas (32,485); Stigmatella (67,349); Streptoalloteichus (544); Streptococcus (7,548,441); Streptomyces (7,607,150); Sulfitobacter (1,872); Sulfolobus (1,861,685); Sulfur-oxidizing (438); Sulfurisphaera (2,691); Sulfurospirillum (5,111); Sweet (661); Sym (1,151); Symbiobacterium (1,038,935); Synechococcus (1,041,627); Synechocystis (1,228,801)
T: TOL (1,043); Tannerella (6,395); Tatlockia (1,797); Tatumella (206); Taxeobacter (396); Tepidomonas (928); Terrabacter (10,585); Tetragenococcus (7,812); Thauera (27,886); Thermoactinomyces (9,251); Thermoanaerobacter (805,985); Thermoanaerobacterium (29,230); Thermobacillus (865); Thermobifida (10,486); Thermobispora (1,461); Thermococcus (76,231); Thermodesulforhabdus (1,739); Thermofilum (473); Thermoleophilum (295); Thermomicrobia (1,888); Thermomicrobium (2,468); Thermomonospora (3,195); Thermoplasma (927,663); Thermoproteus (41,443); Thermosphaera (482); Thermosynechococcus (787,535); Thermotoga (671,389); Thermus (866,351); Thiobacillus (16,373); Thiocapsa (17,991); Thiocystis (3,618); Thiomonas (1,775); Tolypothrix (6,049); Treponema (1,361,942); Trichodesmium (8,652); Tropheryma (531,061); Tsukamurella (1,292); Tychonema (828)
U: Ureaplasma (261,009)
V: Vagococcus (95); Variovorax (4,054); Veillonella (2,372); Vibrio (6,285,294); Virgibacillus (1,208); Vitreoscilla (4,922); Vogesella (3,530); Vulcanisaeta (375)
W: Wautersia (273,346); Weissella (3,791); Western (6,545); Wigglesworthia (203,313); Wolbachia (368,940); Wolinella (682,983)
X: Xanthobacter (23,150); Xanthomonas (3,227,787); Xenophilus (282); Xenorhabdus (37,959); Xylanimicrobium (1,994); Xylella (1,416,784)
Y: Yersinia (5,759,929)
Z: Zobellia (1,932); Zoogloea (1,803); Zymobacter (557); Zymomonas (173,847)