| Normal | |||
| Frame | Start codon (ATG) | Stop codon (TGA TAG TAA) | ORF (Start:Stop) |
| 1 | 1 169 | 82 289 421 1189 1312 1429 1546 1561 1636 1693 1879 2017 2068 2398 | 1:82 169:289 |
| 2 | 2 182 | 11 167 170 881 986 1373 1946 2180 2399 | 182:881 |
| 3 | 3 225 402 1308 1635 1692 1695 1734 1845 1878 2058 2100 2217 2319 | 183 2361 2400 | 3:183 225:2361 402:2361 1308:2361 1635:2361 1692:2361 1695:2361 1734:2361 1845:2361 1878:2361 2058:2361 2100:2361 2217:2361 |
| Complementary | |||
| Frame | Start codon (ATG) | Stop codon (TGA TAG TAA) | ORF (Start:Stop) |
| 1 | 2402 | 539 5 | 2402:539 |
| 2 | 2401 2320 2218 2140 2101 2059 2023 1999 1930 1879 1819 1762 1735 1693 1606 1582 1309 1225 403 385 61 | 1900 1453 1411 1294 1270 1246 808 4 | 2401:1900 2320:1900 2218:1900 2140:1900 2101:1900 2059:1900 2023:1900 1999:1900 1879:1453 1819:1453 1762:1453 1735:1453 1693:1453 1606:1453 1582:1453 1225:808 403:4 385:4 |
| 3 | 2400 267 183 | 2319 2289 2277 2217 2211 2160 2085 1761 1728 1692 1665 1605 1575 1446 1419 345 177 153 132 6 | 2400:2319 267:177 |
LOCUS MLURHO 2402 bp DNA BCT 12-NOV-1996
DEFINITION Micrococcus luteus Rho factor (rho) gene, complete cds.
ACCESSION L27277
NID g1666539
KEYWORDS .
SOURCE Micrococcus luteus.
ORGANISM Micrococcus luteus
Eubacteria; Firmicutes; Actinomycetes; Micrococcaceae; Micrococcus.
REFERENCE 1 (bases 905 to 2402)
AUTHORS Opperman,T. and Richardson,J.P.
TITLE Phylogenetic analysis of sequences from diverse bacteria with
homology to the Escherichia coli rho gene
JOURNAL J. Bacteriol. 176 (16), 5033-5043 (1994)
MEDLINE 94327472
REFERENCE 2 (bases 1 to 2402)
AUTHORS Nowatzke,W.L. and Richardson,J.P.
TITLE Characterization of an unusual Rho factor from the high G + C
gram-positive bacterium Micrococcus luteus
JOURNAL J. Biol. Chem. 271 (2), 742-747 (1996)
MEDLINE 96132802
REFERENCE 3 (bases 905 to 2402)
AUTHORS Richardson,J.P.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-1994) John P. Richardson, Chemistry, Indiana
University, Bloomington, IN 47405, USA
REFERENCE 4 (bases 1 to 2402)
AUTHORS Nowatzke,W.L.
TITLE Direct Submission
JOURNAL Submitted (07-NOV-1996) William L. Nowatzke, Chemistry, Indiana
University, Bloomington, IN 47405, USA
FEATURES Location/Qualifiers
source 1..2402
/organism="Micrococcus luteus"
/strain="EM"
CDS 288..2363
/gene="rho"
/function="transcription termination factor"
/codon_start=1
/product="Rho factor"
/db_xref="PID:g1666540"
/transl_table=11
/translation="MTESTEQTTPTNGGGLASLKLAQLQALASQLGIAGGSRMRKADL
VTAISDHQRGGSVADRDAAERAAQAPAAPAAETAPAAASSEDAAPAAERPARRRSRRA
DADTSAPAAAQDGQPQAEAREAQTEQAPRETASDQDRSGGSEARDEGEDRPQSERRSR
GRRRAGDDDAQQGQDRRSDGAQGEDGADADRRGDREDRDDNGRENGRGRNGRNGRDRD
NGRDRENGRENSRDRENGRDGSREQRGDKSEDGGRGDGGRGDRSRRDDRDDEGGRNRR
NRRNRNERGRNRRGRGGPEVDETELTEDDVLQPVAGILDVLDNYAFVRTSGYLPGPND
VYVSLAMVKKYGLRKGDAVVGPIAPRDGEKQQHHGGGSNRQKFNALVKISSVNGQPAV
EHPQRVEFGKLVPLYPQERLRLETDPKLIGPRVIDLVSPIGKGQRGLIVSPPKAGKTM
ILQSIANAIKTNNPEVHLMMVLVDERPEEVTDMQRSVDGEVIASTFDRPADDHTTLAE
LAIERAKRLVEMGRDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSSALYPPKKFFG
AARNIENGGSLTILATALVETGSRMDEVIFEEFKGTGNMELRLSRHLAERRIFPAVDV
NASGTRREEALLSQEEVKIMWKLRRVLSGLEQQQALDLLTNKIKDTASNAEFLMLVSK
TTLGSKGDD"
BASE COUNT 386 a 947 c 818 g 251 t
ORIGIN
1 cccgggcctg tgacggccgg acgcaccgtg cgccgtcggc cggaaccccg ccgcgatcca
61 tcccgtgctg cgcacggccg gtgagcggga ccccctccgg ctcggtcgag tccggacgcc
121 tccgccccgt cacgcagcga ctgcgcacga tcaggggagg cgccactgat gagttcacac
181 catgaaaccc ggttttctgg ggcgccgctg cgcggcccga ccggatgcac accgcagccc
241 gacgcgccac gcgccgccgg gccgcattcg agggagaagg aaccttcgtg accgaatcca
301 cggaacagac cacgccgacg aacggcggtg gcctggcctc gctcaagctc gcccagctcc
361 aggccctggc ctcccagctc ggcatcgccg gcggctcgcg catgcgcaag gccgacctgg
421 tgaccgcgat ctccgaccac cagcgcggcg gctccgtggc ggaccgcgac gccgccgagc
481 gcgcggccca ggcccccgcg gcccccgccg ccgagaccgc cccggcggcc gcgtcctcag
541 aggacgccgc cccagccgcc gagcgcccgg cccgccgccg ctcgcgccgc gccgacgccg
601 acacctccgc tccggccgcc gcccaggacg ggcagcccca ggccgaggcc cgcgaggccc
661 agaccgagca ggccccccgg gagaccgcct cggaccagga tcggtccggg gggtccgagg
721 cccgcgacga gggcgaggac cgcccgcagt ccgagcgccg ctcccgcggc cgtcgccgcg
781 ccggcgacga cgacgcccag cagggtcagg accgtcgctc cgacggcgcc cagggcgagg
841 acggcgccga cgcggaccgc cgcggcgacc gggaggaccg tgacgacaac gggcgcgaga
901 acggccgcgg ccgcaacggc cgcaacgggc gggaccgcga caacggccgc gaccgcgaga
961 acggccgcga gaacagccgg gaccgtgaga acggccgcga cggctcgcgc gagcagcgcg
1021 gcgacaagtc cgaggacggt ggccggggcg acggcggacg cggggaccgc agccgccgcg
1081 acgaccgcga cgacgagggc ggccgcaacc gtcgcaaccg ccgcaaccgc aacgagcgcg
1141 gccgcaaccg ccgtggccgc ggcggccccg aggtcgacga gaccgagctg accgaggacg
1201 acgtcctgca gcccgtggcc ggcatcctcg acgtgctgga caactacgcg ttcgtccgca
1261 cctccggcta cctgccgggc ccgaacgacg tctacgtctc cctggccatg gtgaagaagt
1321 acggtctgcg caagggcgac gccgtcgtcg ggccgatcgc cccgcgcgac ggtgagaagc
1381 agcagcacca cggcggcggc tccaaccgtc agaagttcaa cgccctggtg aagatctcct
1441 cggtcaacgg tcagcccgcc gtcgagcacc cgcagcgcgt cgagttcggc aagctcgtgc
1501 cgctgtaccc gcaggagcgc ctgcgcctgg agaccgatcc caagctgatc ggtccccgcg
1561 tgatcgatct ggtcagcccc atcggcaagg gccagcgcgg cctcatcgtc tccccgccca
1621 aggccggcaa gacgatgatc ctgcagtcga tcgccaacgc gatcaagacg aacaaccccg
1681 aggtccacct catgatggtg ctcgtcgacg agcgccccga ggaggtcacc gacatgcagc
1741 ggtcggtgga cggcgaggtc atcgcctcca cgttcgaccg cccggcggac gaccacacca
1801 ccctcgccga gctggccatc gagcgcgcca agcgcctcgt ggagatgggc cgcgacgtcg
1861 tcgtgctgct cgactccatg acccgcctgg gccgcgccta caacctggcc gccccggcct
1921 cgggccgcat cctctccggc ggtgttgact cctcggcgct gtacccgccg aagaagttct
1981 tcggcgccgc ccgcaacatc gagaacggcg gctcgctgac catcctggcc accgcgctgg
2041 tcgagaccgg ctcgcgcatg gacgaggtga tcttcgagga gttcaagggc accggcaaca
2101 tggagctgcg cctgtcccgc cacctcgcgg agcgccgcat cttcccggcg gtggacgtca
2161 acgcgtccgg cacccgccgt gaggaggccc tgctctcgca ggaggaggtc aagatcatgt
2221 ggaagctgcg ccgggtgctc tccggcctcg agcagcagca ggccctcgac ctgctcacca
2281 acaagatcaa ggacaccgcg tccaacgccg agttcctcat gctggtctcc aagaccacgc
2341 tggggtccaa gggcgacgac tgaccgtccc gtcgcacggc cccgtcccgc ccgggggagc
2401 tc
//