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Nocardia farcinica
Genome BLAST Search
Program:
BLASTN (DNA vs DNA)
BLASTP (Protein vs Protein)
TBLASTN (Protein vs DNA)
Against:
N. farcinica IFM 10152 Chromosome (DNA)
plasmid pNF1 (DNA)
plasmid pNF2 (DNA)
Above three: Chromosome+pNF1+pNF2 (DNA)
-------------------------------------------------------------
N. farcinica IFM 10152 CDSs Chromosome (Protein)
CDSs pNF1 (Protein)
CDSs pNF2 (Protein)
Above three: Chromosome+pNF1+pNF2 CDSs (Protein)
====================== other species =======================
N. brasiliensis ATCC 700358 Chromosome (DNA)
N. brasiliensis ATCC 700358 CDSs Chromosome (Protein)
N. cyriacigeorgica GUH-2 Chromosome (DNA)
N. cyriacigeorgica GUH-2 CDSs Chromosome (Protein)
M. tuberculosis H37Rv Chromosome (DNA)
M. tuberculosis H37Rv CDSs Chromosome (Protein)
G. bronchialis DSM 43247 Chromosome (DNA)
G. bronchialis DSM 43247 CDSs Chromosome (Protein)
S. avermitilis Chromosome (DNA)
S. avermitilis CDSs Chromosome (Protein)
====================== other databases =====================
Swiss-Prot (Protein)
Query (FASTA format):
Expectation value (E)
0.0001
0.001
0.01
0.1
1
10
100
1000
Number of one-line descriptions to show
5
10
25
50
100
Number of alignments to show
5
10
25
50
100
Graphical overview.
Sort by
score
position
Scoring matrix
default
BLOSUM45
BLOSUM62
BLOSUM80
PAM30
PAM70
DB Genetic Codes (tblast[nx] only)
default
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Copyright ©
Jun Ishikawa
(National Institute of Infectious Diseases)
