NFAR.fasta.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 3.21

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NFA 2003-09-04
Parameters: 2 7 7 80 10 50 500
Length:  6021225

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 620 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505--572	18	3.8	18	96	1	120	22	44	23	10	1.83
2045--2087	22	2.0	22	95	0	77	18	25	30	25	1.98
12582--12658	24	3.2	24	92	0	118	23	31	41	3	1.72
33981--34019	21	1.9	20	94	5	69	20	38	38	2	1.66
63137--63182	18	2.6	18	82	0	56	0	28	50	21	1.49
69975--70018	21	2.2	20	84	11	56	9	31	38	20	1.84
70192--70236	15	3.0	15	83	0	63	8	35	40	15	1.79
70247--70275	15	1.9	15	100	0	58	6	44	34	13	1.71
70202--70271	36	2.0	35	85	2	95	8	42	34	14	1.76
70315--70394	15	5.1	15	70	14	54	6	40	37	16	1.74
71481--71513	17	1.9	17	100	0	66	0	24	45	30	1.53
73199--73233	18	1.9	18	88	0	52	2	40	40	17	1.64
77018--77280	78	3.4	78	97	1	492	16	34	39	9	1.82
77852--77884	15	2.2	15	100	0	66	6	54	39	0	1.25
81593--81626	16	2.1	16	94	0	59	26	26	32	14	1.95
93095--93176	27	3.0	27	89	0	119	8	39	41	10	1.71
93627--93691	27	2.4	27	81	0	76	6	35	43	15	1.72
93677--93721	15	3.0	15	76	0	54	8	24	42	24	1.83
93731--93771	15	2.7	15	88	7	57	7	43	31	17	1.76
93960--94003	22	2.0	22	82	8	54	13	29	36	20	1.91
111486--111553	17	4.0	17	90	5	111	0	26	33	39	1.57
114994--115024	15	2.1	15	100	0	62	19	19	48	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115631--115660	15	2.0	15	93	0	51	10	53	30	6	1.60
123504--123554	18	2.8	18	87	0	75	19	23	41	15	1.90
124774--124804	15	2.1	15	93	0	53	3	41	54	0	1.16
127511--127540	15	2.0	15	100	0	60	26	33	20	20	1.97
128912--128947	15	2.4	15	100	0	72	22	33	38	5	1.77
152254--152298	21	2.1	21	100	0	90	0	33	44	22	1.53
152254--152336	21	3.7	23	81	9	75	4	28	42	24	1.75
153089--153117	15	1.9	15	100	0	58	34	17	27	20	1.95
162167--162205	6	6.5	6	100	0	78	15	33	51	0	1.44
165840--165899	15	4.0	15	86	0	75	18	35	35	11	1.87
176438--176608	79	2.2	79	97	0	324	11	38	42	7	1.70
186555--186587	15	2.2	15	94	0	57	9	30	54	6	1.56
193291--193467	79	2.2	80	94	2	320	6	35	37	20	1.79
212304--212364	30	2.0	30	90	6	97	13	47	36	3	1.59
212308--212361	15	3.6	15	78	14	58	12	46	37	3	1.60
222430--222461	15	2.1	15	94	0	55	3	21	50	25	1.64
222512--222556	12	3.8	12	93	0	63	8	26	44	20	1.80
242391--242421	15	2.1	15	93	0	53	6	19	58	16	1.59
246136--246173	18	2.1	18	95	0	67	21	34	23	21	1.97
252705--252733	9	3.2	9	100	0	58	20	31	34	13	1.92
256029--256058	9	3.3	9	100	0	60	20	40	26	13	1.89
257027--257102	15	5.8	15	65	34	59	23	25	36	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257036--257109	24	3.1	24	100	0	148	24	25	37	12	1.90
258572--258629	26	2.2	26	87	0	80	24	24	29	22	1.99
258884--258934	24	2.1	24	92	0	84	9	39	27	23	1.86
268594--268628	17	2.1	17	100	0	70	28	48	17	5	1.69
275192--275226	15	2.3	15	90	0	52	25	45	22	5	1.74
276150--276230	18	4.5	18	85	0	117	6	30	41	20	1.77
276158--276227	36	1.9	36	97	0	131	5	30	44	20	1.74
286200--286413	78	2.7	78	97	0	401	5	34	39	21	1.76
297597--297639	21	2.0	21	90	0	68	9	53	23	13	1.69
309231--309267	18	2.1	18	94	0	65	8	40	45	5	1.56
309255--309298	17	2.5	17	88	3	61	2	22	56	18	1.52
322083--322153	24	3.1	24	88	9	96	8	33	40	16	1.79
322092--322174	21	3.7	23	85	7	93	7	34	40	16	1.76
373970--374161	27	7.1	27	84	2	233	16	39	36	8	1.78
373970--374164	54	3.6	54	87	2	275	15	38	36	8	1.78
373970--374164	81	2.4	81	85	1	266	15	38	36	8	1.78
375017--375096	17	4.8	17	76	10	60	11	35	41	12	1.79
375067--375154	34	2.6	34	80	1	106	13	37	37	11	1.81
375124--375190	8	8.0	8	80	9	80	16	47	34	1	1.56
382644--382686	15	2.9	15	96	0	77	27	39	32	0	1.57
382616--382719	15	6.9	15	82	2	75	34	33	31	0	1.58
382693--382731	18	2.2	18	90	0	60	41	23	35	0	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390574--390614	15	2.9	15	89	7	59	12	31	29	26	1.92
391979--392038	17	3.5	17	90	0	84	18	53	6	21	1.67
396136--396175	13	3.1	13	92	0	62	15	35	42	7	1.75
424191--424239	21	2.3	21	100	0	98	8	51	32	8	1.61
424359--424496	54	2.5	54	75	5	136	7	36	40	15	1.76
440596--440631	17	2.1	17	100	0	72	16	19	41	22	1.90
441230--441267	12	3.2	12	85	3	51	0	31	60	7	1.25
443225--443282	18	3.2	18	90	2	89	27	22	43	6	1.79
446477--446510	12	2.8	12	100	0	68	8	58	23	8	1.56
509140--509177	15	2.5	15	87	8	51	7	34	34	23	1.84
528147--528201	27	2.0	27	89	0	83	20	43	27	9	1.81
528609--528679	33	2.2	33	87	10	101	2	40	42	14	1.60
528740--528917	15	11.5	15	71	11	85	1	33	44	19	1.61
528740--528860	30	4.0	30	78	2	107	1	33	45	19	1.61
547168--547216	18	2.5	20	90	6	75	6	22	55	16	1.63
550832--550864	14	2.4	14	100	0	66	21	33	30	15	1.94
560254--560321	18	3.8	18	88	0	100	13	30	39	16	1.86
560315--560362	18	2.7	18	83	9	62	12	29	56	2	1.48
560416--560462	15	3.1	16	78	6	53	19	27	31	21	1.97
584984--585242	77	3.4	77	91	4	443	15	34	42	8	1.76
595825--595854	15	2.0	15	100	0	60	0	46	46	6	1.29
597284--597319	18	2.0	18	88	0	54	0	36	25	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600331--600501	68	2.5	68	93	0	279	9	34	43	12	1.75
608993--609102	24	4.6	24	76	8	100	7	19	59	14	1.58
608985--609103	48	2.5	48	83	5	134	7	21	57	14	1.62
610265--610299	18	1.9	18	94	0	61	0	34	48	17	1.47
625199--625378	42	4.3	42	90	0	243	4	25	57	12	1.53
625362--625419	15	3.8	15	79	2	71	3	24	62	10	1.43
629836--629862	13	2.1	13	100	0	54	22	40	29	7	1.81
633952--634014	15	4.2	15	80	8	74	20	52	17	9	1.72
649957--650025	28	2.4	30	85	4	97	13	43	27	15	1.84
650011--650051	14	2.9	14	88	0	64	9	36	31	21	1.86
670152--670185	9	3.8	9	84	0	50	14	50	35	0	1.44
691531--691784	54	4.6	54	81	7	228	10	40	40	7	1.68
691964--692156	90	2.1	90	91	0	305	8	39	40	10	1.71
692357--692403	21	2.2	21	84	0	58	17	38	38	6	1.75
701675--701716	18	2.3	18	95	0	75	19	30	45	4	1.71
709564--709754	79	2.4	78	91	4	305	5	37	39	17	1.74
714500--714554	21	2.6	21	80	11	67	9	50	29	10	1.68
716624--716663	18	2.2	18	86	8	55	20	22	30	27	1.98
718648--718691	21	2.1	21	86	0	61	9	31	29	29	1.88
729399--729431	15	2.2	15	100	0	66	33	48	12	6	1.65
740894--740928	18	1.9	18	88	0	52	5	57	34	2	1.37
789095--789132	18	2.1	18	90	0	58	21	36	31	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795991--796027	18	2.1	18	89	0	56	27	29	29	13	1.94
816501--816541	20	2.0	20	95	0	73	7	14	53	24	1.66
822230--822259	15	2.0	15	100	0	60	20	33	20	26	1.97
825551--825597	24	2.0	23	84	12	60	14	36	38	10	1.81
830746--830799	21	2.6	21	81	0	63	16	35	29	18	1.93
842880--842914	18	1.9	18	88	11	54	11	28	48	11	1.74
863958--864012	15	3.7	15	82	4	67	3	16	60	20	1.51
866564--866607	18	2.4	18	88	0	61	6	31	47	13	1.69
866619--866681	18	3.5	18	74	8	74	6	23	47	22	1.74
866562--866703	54	2.6	54	71	2	124	10	26	47	16	1.78

Tables:   1   2   3   4   5   6