NFAR.fasta.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 4.00

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NFA 2003-09-04
Parameters: 2 7 7 80 10 50 500
Length:  6021225

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 836 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595825--595854	15	2.0	15	100	0	60	0	46	46	6	1.29
597284--597319	18	2.0	18	88	0	54	0	36	25	38	1.56
600331--600501	68	2.5	68	93	0	279	9	34	43	12	1.75
608993--609102	24	4.6	24	76	8	100	7	19	59	14	1.58
608985--609103	48	2.5	48	83	2	141	7	21	57	14	1.62
610265--610299	18	1.9	18	94	0	61	0	34	48	17	1.47
625173--625336	84	2.0	84	82	0	202	4	27	55	12	1.56
625244--625311	19	3.4	19	70	21	66	4	23	57	14	1.56
625263--625334	23	3.3	23	70	21	82	4	22	59	13	1.51
625258--625323	21	3.2	20	68	16	62	4	21	59	15	1.54
625362--625419	15	3.8	15	79	2	71	3	24	62	10	1.43
625199--625378	42	4.3	42	90	0	243	4	25	57	12	1.53
625322--625419	42	2.2	45	80	10	105	4	24	61	10	1.45
625362--625419	30	1.9	31	85	3	82	3	24	62	10	1.43
625470--625514	20	2.3	18	82	14	54	0	31	60	8	1.28
629836--629862	13	2.1	13	100	0	54	22	40	29	7	1.81
633952--634014	15	4.2	15	80	8	74	20	52	17	9	1.72
649957--650025	28	2.4	30	85	4	97	13	43	27	15	1.84
650011--650051	14	2.9	14	88	0	64	9	36	31	21	1.86
653430--653472	15	2.6	16	78	14	52	18	37	30	13	1.90
670152--670185	9	3.8	9	84	0	50	14	50	35	0	1.44
672889--672922	17	2.0	17	88	0	50	14	29	47	8	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691531--691784	54	4.6	54	81	7	228	10	40	40	7	1.68
691964--692156	90	2.1	90	91	0	305	8	39	40	10	1.71
692357--692403	21	2.2	21	84	0	58	17	38	38	6	1.75
701675--701716	18	2.3	18	95	0	75	19	30	45	4	1.71
701839--701877	21	1.9	20	84	5	51	2	35	38	23	1.68
709564--709754	79	2.4	78	91	4	305	5	37	39	17	1.74
714500--714554	21	2.6	21	80	11	67	9	50	29	10	1.68
716624--716663	18	2.2	19	86	8	57	20	22	30	27	1.98
718648--718691	21	2.1	21	86	0	61	9	31	29	29	1.88
729399--729431	15	2.2	15	100	0	66	33	48	12	6	1.65
740894--740928	18	1.9	18	88	0	52	5	57	34	2	1.37
789095--789132	18	2.1	18	90	0	58	21	36	31	10	1.87
795991--796027	18	2.1	18	89	0	56	27	29	29	13	1.94
816501--816541	20	2.0	20	95	0	73	7	14	53	24	1.66
822230--822259	15	2.0	15	100	0	60	20	33	20	26	1.97
825551--825597	24	2.0	23	84	12	60	14	36	38	10	1.81
842880--842914	18	1.9	18	88	11	54	11	28	48	11	1.74
863958--864012	15	3.7	15	82	4	67	3	16	60	20	1.51
866562--866697	18	7.6	18	74	3	94	9	25	47	16	1.77
866562--866697	36	3.8	36	74	5	123	9	25	47	16	1.77
866562--866703	54	2.6	54	71	2	124	10	26	47	16	1.78
876027--876096	15	4.7	15	80	0	77	14	32	34	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
876598--876644	15	3.1	15	87	0	67	23	42	31	2	1.66
877794--877843	15	3.3	15	94	0	82	24	42	20	14	1.88
880984--881036	24	2.2	24	83	6	63	5	56	35	1	1.34
880994--881036	12	3.5	12	81	12	52	2	55	39	2	1.25
884208--884240	17	1.9	17	88	11	50	3	45	42	9	1.51
888877--888911	15	2.3	15	85	0	52	8	57	34	0	1.29
898063--898127	6	10.8	6	100	0	130	16	33	33	15	1.91
898236--898405	18	9.6	18	79	7	91	16	32	41	10	1.81
898267--898562	18	16.4	18	78	5	206	17	28	46	7	1.74
898818--898847	12	2.5	12	94	0	51	13	56	26	3	1.52
898869--898944	24	3.3	23	80	10	93	7	56	28	6	1.53
898869--898939	21	3.2	21	86	6	97	7	56	29	7	1.53
898879--898952	24	3.2	23	75	14	73	8	52	32	6	1.57
899097--899489	30	13.1	30	100	0	786	3	20	53	23	1.60
899481--899539	30	2.0	30	86	0	82	6	32	38	22	1.80
903487--903579	12	7.2	12	72	13	78	16	45	37	1	1.54
903488--903547	15	4.2	15	81	12	72	13	48	36	1	1.52
903487--903579	27	3.6	27	79	5	120	16	45	37	1	1.54
903488--903571	39	2.1	42	88	6	129	15	46	36	1	1.54
903536--903588	24	2.3	23	87	9	74	20	41	35	1	1.64
903578--903652	33	2.3	33	85	0	96	18	29	41	10	1.84
906875--906924	15	3.5	15	73	10	52	0	26	64	10	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
918667--918697	15	2.1	15	93	0	53	19	32	32	16	1.94
924232--924269	20	1.9	20	84	10	51	10	47	28	13	1.76
924552--924615	18	3.6	18	72	4	58	4	37	48	9	1.56
925406--925579	18	9.7	18	75	7	156	5	28	50	16	1.67
925406--925575	36	4.7	36	92	1	252	5	28	50	16	1.67
926468--926707	30	8.0	30	69	10	159	10	29	47	11	1.74
926482--926738	60	4.3	60	93	0	415	10	31	45	12	1.75
926710--926777	15	4.5	15	84	0	82	7	45	36	10	1.66
926516--926767	30	8.4	30	74	6	179	9	34	43	11	1.75
926701--926795	45	2.1	45	82	0	109	9	43	35	11	1.74
926510--926767	120	2.1	120	86	1	329	10	34	43	11	1.75
926650--926795	30	4.9	30	82	1	132	10	39	39	10	1.75
927325--927373	15	3.3	15	100	0	98	24	26	42	6	1.78
931801--931863	27	2.3	27	94	0	108	15	36	46	1	1.56
931840--931881	21	2.0	21	85	0	57	9	50	38	2	1.48
963483--963526	24	1.9	22	82	17	54	13	47	27	11	1.77
970584--970612	15	2.0	15	93	6	51	13	41	31	13	1.84
972609--972646	19	2.0	19	85	10	51	7	26	57	7	1.54
974348--974479	42	3.1	42	80	0	147	34	38	21	6	1.78
974348--974467	21	5.7	21	82	0	123	34	40	20	5	1.76
974373--974470	21	4.7	21	84	0	133	32	35	24	7	1.83
974348--974467	63	1.9	63	96	0	222	34	40	20	5	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975473--975506	15	2.3	15	89	0	50	32	23	35	8	1.86
975509--975542	15	2.3	15	89	0	50	11	35	44	8	1.72
983314--983339	13	2.0	13	100	0	52	30	23	38	7	1.83
987965--987994	15	2.0	15	100	0	60	6	26	53	13	1.64
995057--995103	18	2.6	18	82	0	67	19	55	25	0	1.43
1003923--1003957	18	1.9	18	88	0	52	5	31	57	5	1.46
1023002--1023039	18	2.1	18	85	9	51	0	13	57	28	1.36
1032439--1032649	80	2.7	80	96	1	390	6	35	39	18	1.77
1045352--1045394	18	2.4	18	88	0	68	4	16	51	27	1.64
1045361--1045419	18	3.3	18	85	0	64	6	15	52	25	1.67
1045388--1045430	18	2.4	18	100	0	86	4	11	55	27	1.55
1045395--1045434	18	2.4	16	88	12	55	5	10	57	27	1.52
1059533--1059600	23	3.0	23	91	0	109	22	26	33	17	1.96
1062852--1062902	18	2.9	17	82	8	66	5	33	58	1	1.33
1068001--1068040	15	2.7	14	88	11	62	10	32	50	7	1.64
1069020--1069123	21	5.0	21	79	0	82	6	33	36	23	1.81
1069029--1069123	42	2.3	42	90	0	145	6	34	37	21	1.79
1071347--1071758	79	5.2	79	96	0	752	4	34	38	22	1.75
1093116--1093195	24	3.4	24	89	1	126	1	27	50	21	1.57
1093399--1093457	30	2.0	30	86	0	82	16	50	23	8	1.72
1093425--1093550	60	2.1	60	81	0	144	11	50	31	6	1.64
1093454--1093550	30	3.3	30	86	1	142	10	48	35	6	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119871--1119923	18	2.9	19	86	8	74	1	24	52	20	1.56
1119869--1119929	18	3.7	15	76	23	68	1	24	52	21	1.56
1125148--1125271	6	20.7	6	77	0	50	6	26	47	19	1.73
1125198--1125232	12	2.9	12	91	0	61	11	31	40	17	1.85
1126642--1126690	20	2.4	19	80	12	53	2	24	61	12	1.42
1127810--1127839	15	1.9	16	93	6	53	13	63	16	6	1.50
1128074--1128109	15	2.4	15	85	0	54	22	27	41	8	1.82
1131915--1131944	15	2.0	15	93	0	51	16	43	33	6	1.74
1148743--1148776	18	1.9	17	88	5	50	17	26	50	5	1.69
1161943--1161994	18	2.9	17	76	21	52	7	55	36	0	1.29

Tables:   1   2   3   4   5   6   7