NFAR.fasta.2.7.7.80.10.50.500.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 4.00

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NFA 2003-09-04
Parameters: 2 7 7 80 10 50 500
Length:  6021225

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 836 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5341550--5341585	15	2.5	14	90	4	54	5	38	52	2	1.39
5368577--5368628	23	2.2	24	86	10	72	1	51	40	5	1.37
5369053--5369094	21	2.0	21	95	0	75	4	45	28	21	1.72
5372782--5372843	16	3.9	16	100	0	124	12	37	24	25	1.91
5382295--5382335	21	2.0	21	85	0	55	7	48	31	12	1.68
5384272--5384306	18	1.9	18	94	0	61	25	51	17	5	1.67
5402575--5402618	18	2.4	18	96	0	79	0	36	50	13	1.42
5418521--5418549	15	1.9	15	100	0	58	20	41	17	20	1.90
5423165--5423500	78	4.3	78	95	2	568	8	44	34	13	1.73
5424493--5424525	15	2.2	15	100	0	66	21	45	21	12	1.84
5442797--5442823	14	1.9	14	100	0	54	22	51	25	0	1.48
5444748--5444784	18	2.1	18	89	0	56	27	45	13	13	1.81
5460095--5460160	33	2.1	30	83	10	80	3	37	46	12	1.56
5460107--5460182	33	2.3	33	86	0	98	1	39	48	10	1.46
5474416--5474445	15	1.9	16	93	6	53	20	33	33	13	1.91
5478746--5478812	15	4.7	15	80	10	77	7	29	38	23	1.82
5478749--5478823	27	2.8	28	85	4	84	10	29	36	24	1.89
5479392--5479433	9	4.7	9	87	0	57	0	14	59	26	1.35
5479390--5479426	18	2.1	18	94	0	65	0	18	56	24	1.41
5482425--5482464	18	2.2	18	86	0	53	15	57	22	5	1.57
5499863--5499924	21	3.0	21	76	4	63	14	38	32	14	1.86
5503049--5503128	18	4.4	18	77	17	94	0	35	45	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5503056--5503123	36	2.0	33	91	8	109	0	36	39	23	1.55
5536437--5536471	18	1.9	18	100	0	70	5	54	34	5	1.48
5543887--5543918	15	2.1	15	94	0	55	9	25	37	28	1.87
5544262--5544301	21	1.9	21	84	0	53	7	42	37	12	1.71
5560024--5560054	15	2.1	15	93	0	53	19	29	45	6	1.75
5561118--5561270	81	1.8	82	80	5	182	12	26	49	11	1.74
5564038--5564077	18	2.2	18	86	0	53	5	22	55	17	1.61
5574952--5575211	77	3.3	78	93	1	459	23	38	32	5	1.77
5582231--5582314	17	4.9	17	85	0	96	22	45	14	17	1.85
5585000--5585045	18	2.6	18	82	6	58	30	30	23	15	1.95
5585011--5585053	19	2.3	18	84	4	50	27	30	20	20	1.98
5589008--5589039	15	2.1	15	94	0	55	12	46	28	12	1.78
5603216--5603262	18	2.6	19	75	18	55	2	51	34	12	1.52
5625704--5625745	15	2.8	15	100	0	84	7	33	42	16	1.75
5642681--5642711	15	2.1	15	93	0	53	6	48	29	16	1.70
5645472--5645505	16	2.2	16	89	5	52	14	35	41	8	1.77
5645743--5645792	9	5.6	9	90	0	82	10	24	46	20	1.81
5645738--5645793	18	3.1	18	89	0	85	10	25	46	17	1.80
5648964--5649128	18	9.2	18	87	5	217	21	49	24	4	1.68
5676770--5676810	18	2.1	20	86	13	59	4	65	24	4	1.32
5680973--5681064	17	5.4	17	81	10	91	7	31	32	28	1.85
5680968--5681050	34	2.5	34	86	5	107	7	31	33	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5680987--5681064	34	2.3	34	86	4	104	8	33	30	26	1.87
5684288--5684347	18	3.3	18	83	0	66	15	36	43	5	1.68
5684314--5684358	18	2.3	19	81	14	56	17	33	44	4	1.69
5684649--5684692	18	2.5	18	92	3	72	29	20	43	6	1.78
5684840--5685027	18	10.4	18	74	5	148	22	47	28	1	1.60
5684840--5685020	54	3.4	54	93	0	299	22	48	27	1	1.60
5685043--5685077	18	1.9	18	94	0	61	17	42	28	11	1.83
5696036--5696077	15	2.8	15	82	7	50	21	38	38	2	1.67
5717199--5717254	15	3.8	15	95	2	96	0	26	32	41	1.56
5720112--5720146	18	1.9	18	88	0	52	14	54	25	5	1.62
5720469--5720602	54	2.5	54	77	0	151	12	48	30	8	1.70
5720358--5720734	150	2.5	150	84	4	341	14	49	28	6	1.69
5720559--5720649	42	2.2	42	88	4	139	16	51	27	4	1.63
5720582--5720647	21	3.1	21	65	16	55	16	51	25	6	1.67
5720448--5720746	150	2.0	150	93	1	510	13	48	30	7	1.69
5721328--5721445	42	2.8	42	75	5	121	22	50	22	5	1.68
5721685--5721773	27	3.3	27	67	17	76	13	60	22	3	1.48
5721645--5721799	54	2.9	54	91	0	229	15	57	23	3	1.55
5721639--5721841	54	3.8	54	85	5	216	15	55	25	3	1.58
5724256--5724300	18	2.6	18	85	3	65	2	66	28	2	1.15
5724371--5724467	21	4.5	21	75	16	92	3	24	59	12	1.47
5724391--5724415	12	2.1	12	100	0	50	0	24	60	16	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5724371--5724497	33	3.9	34	85	10	176	3	22	60	13	1.47
5724369--5724515	66	2.2	66	90	2	233	3	25	57	13	1.52
5728068--5728130	24	2.8	24	80	7	69	28	50	20	0	1.48
5736113--5736195	42	2.0	42	85	4	114	18	26	48	7	1.74
5736536--5736569	17	2.0	17	94	0	59	8	61	29	0	1.26
5747789--5747891	19	5.4	19	85	3	109	18	22	46	12	1.82
5747784--5747901	38	3.0	39	76	7	114	18	23	45	11	1.83
5748624--5748850	78	2.9	79	97	1	429	18	38	36	7	1.79
5755477--5755551	36	2.1	36	92	0	123	13	33	38	14	1.85
5755459--5755542	18	4.7	18	79	8	91	16	34	32	16	1.92
5767669--5767704	18	2.0	18	94	0	63	11	25	44	19	1.83
5771791--5772043	99	2.6	99	87	1	346	17	39	34	7	1.79
5774415--5774458	18	2.4	18	81	7	54	4	38	34	22	1.75
5789088--5789141	18	3.0	18	71	10	56	1	24	46	27	1.63
5815208--5815269	21	3.0	21	76	7	63	19	40	29	11	1.86
5817413--5817516	33	3.2	33	68	10	86	9	47	36	6	1.63
5848526--5848560	18	1.9	18	94	0	61	28	51	11	8	1.67
5853080--5853162	36	2.3	36	82	10	91	6	28	63	1	1.25
5853106--5853162	18	3.2	18	95	2	98	3	29	64	1	1.20
5856488--5856531	16	2.8	16	89	0	61	22	25	45	6	1.77
5856487--5856538	16	3.3	15	81	10	59	21	28	44	5	1.75
5861207--5861243	15	2.4	16	82	13	51	5	16	64	13	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5870782--5870820	21	2.0	21	85	10	55	15	17	51	15	1.77
5878806--5878845	18	2.2	18	86	8	55	17	37	35	10	1.83
5886997--5887037	15	2.7	15	84	0	64	14	43	41	0	1.45
5893531--5893588	24	2.4	24	80	8	64	8	39	31	20	1.83
5893708--5893768	33	1.9	32	90	9	99	3	24	59	13	1.49
5893719--5893788	33	2.1	33	83	0	86	5	25	58	10	1.52
5893788--5893821	15	2.3	15	100	0	68	0	26	61	11	1.30
5898681--5898759	27	2.9	27	86	0	104	7	39	41	11	1.70
5898757--5898793	15	2.5	15	86	0	56	5	35	48	10	1.61
5898706--5898877	75	2.3	74	83	4	222	6	34	44	13	1.71
5898777--5898834	27	2.1	27	83	0	71	5	34	46	13	1.66
5930171--5930248	6	13.0	6	100	0	156	16	33	50	0	1.46
5931968--5932015	15	3.2	14	82	11	60	12	35	43	8	1.73
5932408--5932449	22	2.0	22	85	4	59	14	30	42	11	1.81
5938658--5938728	18	3.9	18	79	3	70	12	25	40	21	1.88
5944593--5944677	24	3.5	24	95	0	143	9	35	38	16	1.81
5961770--5961813	15	2.8	16	86	6	63	25	18	43	13	1.86
5962460--5962495	15	2.4	15	90	0	54	5	55	25	13	1.60
5971741--5971771	15	2.1	15	93	0	53	6	32	58	3	1.40
5985904--5985947	21	2.1	21	82	0	52	9	22	54	13	1.67
5985897--5985971	18	4.0	18	69	16	62	9	25	52	13	1.70
5990978--5991036	18	3.3	18	100	0	118	6	32	45	15	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6007973--6008006	17	2.0	17	100	0	68	23	35	29	11	1.90
6013745--6013818	10	7.8	10	68	31	56	0	32	56	10	1.34
6013726--6013862	28	4.9	28	93	1	197	0	30	54	13	1.45
6014297--6014494	18	11.1	18	90	1	227	6	36	41	14	1.72
6014700--6014837	18	7.7	18	92	1	206	19	58	15	6	1.58
6015297--6015433	33	4.2	33	93	0	220	4	36	42	16	1.69

Tables:   1   2   3   4   5   6   7

The End!